mRNA_11200 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171145
Unique NamemRNA_11200
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|171145 vs. uniprot
Match: A0A836C9B8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9B8_9STRA)

HSP 1 Score: 322 bits (826), Expect = 1.070e-111
Identity = 157/157 (100.00%), Postives = 157/157 (100.00%), Query Frame = 1 
Query:    1 MREALSKPKKRKRHKTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVPATLSSDGC 471
            MREALSKPKKRKRHKTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVPATLSSDGC
Sbjct:    1 MREALSKPKKRKRHKTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVPATLSSDGC 157
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BLAST of jgi.p|Trimin1|171145 vs. uniprot
Match: A0A835YXZ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXZ2_9STRA)

HSP 1 Score: 205 bits (522), Expect = 9.300e-63
Identity = 97/144 (67.36%), Postives = 113/144 (78.47%), Query Frame = 1 
Query:   43 KTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVPATLSS-DGC 471
            K C  D++K Y STWRGA  +LV  A  +C+ PTREARGLVCDITF D VNMYS Q G C+YSG+PLT  GDWKVSLER+NV +GY R+NC LIA+EF G+D TARS+L+ TG GGWTR+ YL FRANYDPANV AT+SS D C
Sbjct:  211 KGCTSDKSKHYVSTWRGAFLRLVGNALHSCRTPTREARGLVCDITFKDIVNMYSEQSGCCMYSGVPLTKEGDWKVSLERKNVHVGYIRKNCCLIAMEFQGNDHTARSMLDSTGGGGWTRDKYLFFRANYDPANVHATVSSRDSC 354
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BLAST of jgi.p|Trimin1|171145 vs. uniprot
Match: A0A836CFZ5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFZ5_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.740e-57
Identity = 96/141 (68.09%), Postives = 108/141 (76.60%), Query Frame = 1 
Query:   49 CGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVPATLSSDGC 471
            C   R  +  STWRGAL++LV+ A S+CKMPTREARGLVC+ITF D V MY  QRG CLYSGIPL  AGDWKVSLERR+VRIGYT +N  LIA EF G D TA SI+E TG G WTR+ YL FRANY+PANVP TL S+ C
Sbjct:  723 CRGRRQNEIGSTWRGALRRLVANANSSCKMPTREARGLVCEITFEDVVGMYREQRGACLYSGIPLAKAGDWKVSLERRDVRIGYTLQNTCLIAAEFQGIDHTAHSIIESTGSGAWTRQKYLFFRANYNPANVPTTLRSNSC 863
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BLAST of jgi.p|Trimin1|171145 vs. uniprot
Match: A0A835YK65_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK65_9STRA)

HSP 1 Score: 196 bits (498), Expect = 9.650e-56
Identity = 95/136 (69.85%), Postives = 105/136 (77.21%), Query Frame = 1 
Query:   43 KTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVPA 450
            K C  DRAKQYASTWRGA   +V+ A+  CK  T EARGLVC+I F D VNMYS Q GGCLYSGIPLTT GDWKVSLERR+VR+GYTRENC LIA+EF G+D TA S     GC GW+RE YL FR NY+PANVPA
Sbjct:  655 KGCCCDRAKQYASTWRGAFFMMVTHASQRCKTTTHEARGLVCNIRFDDVVNMYSEQGGGCLYSGIPLTTKGDWKVSLERRDVRVGYTRENCCLIAMEFQGTDYTAVSKYGGDGCSGWSREKYLFFRTNYNPANVPA 790
[Close]
BLAST of jgi.p|Trimin1|171145 vs. uniprot
Match: A0A835Z941_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z941_9STRA)

HSP 1 Score: 183 bits (464), Expect = 4.110e-55
Identity = 87/135 (64.44%), Postives = 96/135 (71.11%), Query Frame = 1 
Query:   43 KTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVP 447
            K C  DR K Y +TWRGA ++LV+ AT  CK PTREARGLVC+ITF DAVNMY  QRG C YSGIPLT  GDWKVSLERR+V +GYT  NC L+A EF G D T  S    TG G W+R  Y  FR NYDPANVP
Sbjct:  109 KRCVSDRQKMYGATWRGAFKRLVTNATHTCKRPTREARGLVCEITFEDAVNMYREQRGVCFYSGIPLTAEGDWKVSLERRDVHVGYTGRNCCLVAAEFQGIDHTVDSKYGGTGSGAWSRSKYEYFRDNYDPANVP 243
[Close]
BLAST of jgi.p|Trimin1|171145 vs. uniprot
Match: A0A835Z7X8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7X8_9STRA)

HSP 1 Score: 192 bits (487), Expect = 3.860e-54
Identity = 94/135 (69.63%), Postives = 103/135 (76.30%), Query Frame = 1 
Query:   43 KTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVP 447
            K C   RAKQY STWRGA   LV+ AT  CK+PTREARGLVCDITF D  NMY +Q G C YSGIPLTT GDWKVSLERR+VR+GYTRENC LIA+EF  +D TA S  E TGC GW+ + Y  FRANYDPANVP
Sbjct:  657 KGCMISRAKQYGSTWRGAFFILVNNATKRCKVPTREARGLVCDITFEDLANMYRDQCGVCSYSGIPLTTEGDWKVSLERRDVRVGYTRENCCLIAMEFQSADLTAVSKYEGTGCAGWSLQKYEYFRANYDPANVP 791
[Close]
BLAST of jgi.p|Trimin1|171145 vs. uniprot
Match: A0A835YI85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI85_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.880e-50
Identity = 85/135 (62.96%), Postives = 102/135 (75.56%), Query Frame = 1 
Query:   43 KTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVP 447
            K C +D +++YA+TWRGA   LV+ AT  C+  TREARGLVCDITF D VNMY  Q GGCLYSGIPLTT GDWK+SLER++V +GYTR+N  LIA+EF  +D TA +    TG GGW+RE  L FRANY+PA VP
Sbjct:  379 KKCMKDSSEKYAATWRGAFFILVNNATKRCQTRTREARGLVCDITFEDVVNMYQEQLGGCLYSGIPLTTKGDWKMSLERKDVHVGYTRQNSCLIAMEFQSADHTACTTYGGTGSGGWSREKSLFFRANYNPAYVP 513
[Close]
BLAST of jgi.p|Trimin1|171145 vs. uniprot
Match: A0A836CG03_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG03_9STRA)

HSP 1 Score: 177 bits (448), Expect = 3.860e-49
Identity = 87/135 (64.44%), Postives = 97/135 (71.85%), Query Frame = 1 
Query:   43 KTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVP 447
            K C  D+ K Y  TWRGA   LV  A   CK  T EARGLVC+ITF D VN+Y  Q G C YSGIPLTT GDWKVSLERR+VR+GY+RENC LIA+EF G+D TA S     GCGGW+RE YL FRANY PA+VP
Sbjct:  526 KRCVIDKKKLYGFTWRGAFMNLVHSAKHRCKTGTIEARGLVCEITFEDIVNIYKEQCGTCSYSGIPLTTDGDWKVSLERRDVRVGYSRENCCLIAMEFQGTDYTAVSKYGGDGCGGWSREKYLFFRANYKPADVP 660
[Close]
BLAST of jgi.p|Trimin1|171145 vs. uniprot
Match: A0A835YM24_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM24_9STRA)

HSP 1 Score: 173 bits (438), Expect = 4.100e-47
Identity = 81/143 (56.64%), Postives = 100/143 (69.93%), Query Frame = 1 
Query:   43 KTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVPATLSSDGC 471
            K C  +  K++ STWRGA ++LV  AT+ CK+PTR ARGLVC ITF D V+MYS Q G C YS IP+T  GDWK+SLER++V +GY+RENC +IA+EF  +D TA S     GC  W+   Y  FRANYDPANVP T  +D C
Sbjct:  803 KECMCNAVKRFESTWRGAFKRLVKNATAHCKLPTRAARGLVCSITFEDLVDMYSEQGGACCYSRIPVTIEGDWKLSLERKDVHVGYSRENCCIIAMEFQSADFTATSKYGGDGCAAWSAIKYNYFRANYDPANVPTTRGNDSC 945
[Close]
BLAST of jgi.p|Trimin1|171145 vs. uniprot
Match: A0A836CDF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDF9_9STRA)

HSP 1 Score: 163 bits (412), Expect = 9.630e-45
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 1 
Query:   43 KTCGRDRAKQYASTWRGALQKLVSRATSACKMPTREARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGYTRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVPATLSSDGC 471
            K C  +  KQ  +TWRGA ++LV+ AT+ CK+P R ARGL+C ITF D V+MY  Q G C YS IP+TT GDWK+SL+R++V +GY R NC +IA+EF  +D TA S     GC GW+   Y  FRA+Y+PANVP T   D C
Sbjct:  395 KECMCNAVKQVEATWRGAFKRLVNNATAHCKLPARAARGLICTITFKDLVDMYREQGGACFYSRIPVTTEGDWKMSLKRKDVHVGYARANCCIIAMEFQSADFTATSKYGGEGCAGWSAIKYNYFRASYNPANVPTTRRIDSC 537
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171145 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9B8_9STRA1.070e-111100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXZ2_9STRA9.300e-6367.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFZ5_9STRA1.740e-5768.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YK65_9STRA9.650e-5669.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z941_9STRA4.110e-5564.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7X8_9STRA3.860e-5469.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YI85_9STRA1.880e-5062.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CG03_9STRA3.860e-4964.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YM24_9STRA4.100e-4756.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CDF9_9STRA9.630e-4553.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_79contigContig_79:365511..365984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171145|e_gw1.79.15.1
Hectar predicted targeting categoryother localisation
TranscriptId171467
TrackFilteredModels1
ProteinId171145
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171145gene_11200Tribonema minus UTEX_B_3156 geneContig_79 365511..365984 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11200_1exon_11200_1Tribonema minus UTEX_B_3156 exonContig_79 365511..365984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11200CDS_11200Tribonema minus UTEX_B_3156 CDSContig_79 365511..365984 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171145Trimin1|171145|e_gw1.79.15.1Tribonema minus UTEX_B_3156 polypeptideContig_79 365511..365984 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11200 ID=mRNA_11200|Name=jgi.p|Trimin1|171145|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_79:365511..365984+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGAAGCGCTCTCCAAGCCCAAAAAACGGAAACGCCATAAAACATG
CGGAAGGGACAGAGCAAAGCAATATGCCTCTACATGGCGGGGAGCGTTGC
AGAAATTGGTGAGCAGAGCGACTAGTGCTTGCAAAATGCCTACCCGTGAG
GCTCGCGGATTGGTGTGTGATATCACGTTTGCGGACGCTGTCAATATGTA
TAGCAATCAGCGCGGTGGTTGCTTGTATAGTGGCATTCCATTAACCACAG
CAGGCGACTGGAAAGTGTCGCTTGAGAGACGCAACGTGCGTATTGGGTAC
ACCCGTGAGAACTGTTTCTTAATCGCAGTAGAGTTCCCAGGAAGTGATCA
GACAGCACGCAGCATTTTAGAGGTCACTGGATGCGGGGGGTGGACTCGTG
AAATGTATTTGCTTTTCAGGGCCAACTACGACCCTGCCAATGTGCCTGCC
ACCCTGAGCAGCGACGGCTGCTGA
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protein sequence of jgi.p|Trimin1|171145

>Trimin1|171145|e_gw1.79.15.1 ID=Trimin1|171145|e_gw1.79.15.1|Name=jgi.p|Trimin1|171145|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=158bp
MREALSKPKKRKRHKTCGRDRAKQYASTWRGALQKLVSRATSACKMPTRE
ARGLVCDITFADAVNMYSNQRGGCLYSGIPLTTAGDWKVSLERRNVRIGY
TRENCFLIAVEFPGSDQTARSILEVTGCGGWTREMYLLFRANYDPANVPA
TLSSDGC*
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mRNA from alignment at Contig_79:365511..365984+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11200 ID=mRNA_11200|Name=jgi.p|Trimin1|171145|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=474bp|location=Sequence derived from alignment at Contig_79:365511..365984+ (Tribonema minus UTEX_B_3156 )
ATGCGCGAAGCGCTCTCCAAGCCCAAAAAACGGAAACGCCATAAAACATG
CGGAAGGGACAGAGCAAAGCAATATGCCTCTACATGGCGGGGAGCGTTGC
AGAAATTGGTGAGCAGAGCGACTAGTGCTTGCAAAATGCCTACCCGTGAG
GCTCGCGGATTGGTGTGTGATATCACGTTTGCGGACGCTGTCAATATGTA
TAGCAATCAGCGCGGTGGTTGCTTGTATAGTGGCATTCCATTAACCACAG
CAGGCGACTGGAAAGTGTCGCTTGAGAGACGCAACGTGCGTATTGGGTAC
ACCCGTGAGAACTGTTTCTTAATCGCAGTAGAGTTCCCAGGAAGTGATCA
GACAGCACGCAGCATTTTAGAGGTCACTGGATGCGGGGGGTGGACTCGTG
AAATGTATTTGCTTTTCAGGGCCAACTACGACCCTGCCAATGTGCCTGCC
ACCCTGAGCAGCGACGGCTGCTGA
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Coding sequence (CDS) from alignment at Contig_79:365511..365984+

>mRNA_11200 ID=mRNA_11200|Name=jgi.p|Trimin1|171145|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=474bp|location=Sequence derived from alignment at Contig_79:365511..365984+ (Tribonema minus UTEX_B_3156 )
ATGCGCGAAGCGCTCTCCAAGCCCAAAAAACGGAAACGCCATAAAACATG
CGGAAGGGACAGAGCAAAGCAATATGCCTCTACATGGCGGGGAGCGTTGC
AGAAATTGGTGAGCAGAGCGACTAGTGCTTGCAAAATGCCTACCCGTGAG
GCTCGCGGATTGGTGTGTGATATCACGTTTGCGGACGCTGTCAATATGTA
TAGCAATCAGCGCGGTGGTTGCTTGTATAGTGGCATTCCATTAACCACAG
CAGGCGACTGGAAAGTGTCGCTTGAGAGACGCAACGTGCGTATTGGGTAC
ACCCGTGAGAACTGTTTCTTAATCGCAGTAGAGTTCCCAGGAAGTGATCA
GACAGCACGCAGCATTTTAGAGGTCACTGGATGCGGGGGGTGGACTCGTG
AAATGTATTTGCTTTTCAGGGCCAACTACGACCCTGCCAATGTGCCTGCC
ACCCTGAGCAGCGACGGCTGCTGA
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