mRNA_11701 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|156254
Unique Name	mRNA_11701
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|156254 vs. uniprot
Match: A0A835ZEE2_9STRA (HDAC_interact domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEE2_9STRA)

HSP 1 Score: 152 bits (385), Expect = 4.300e-47
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 1

Query:    1 MEASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 222
            MEASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV
Sbjct:    1 MEASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 74

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BLAST of jgi.p|Trimin1|156254 vs. uniprot
Match: A0A835ZD67_9STRA (HDAC_interact domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD67_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.870e-20
Identity = 50/74 (67.57%), Postives = 56/74 (75.68%), Query Frame = 1

Query:    1 MEASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 222
            ME SVLNDTWVSVPVGSEDSS +   R +  E A        LFRCEDERF+IDMVI+ST ST+KLLEPLAEE+
Sbjct:  695 MEDSVLNDTWVSVPVGSEDSSNFKHMRKNQYEEA--------LFRCEDERFEIDMVIDSTTSTIKLLEPLAEEI 760

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BLAST of jgi.p|Trimin1|156254 vs. uniprot
Match: A0A7S3HNY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNY2_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.470e-15
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1

Query:    4 EASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 222
            EA VLND WVS+P+GSE+S  +   R +  E A        LF+CEDERF+IDMVI+S   T+++LEPLAEE+
Sbjct:  232 EAKVLNDQWVSIPIGSEESYSFKHMRKNQYEEA--------LFKCEDERFEIDMVIDSNMCTIRVLEPLAEEI 296

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BLAST of jgi.p|Trimin1|156254 vs. uniprot
Match: A0A7S3MGY4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MGY4_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 6.590e-15
Identity = 39/73 (53.42%), Postives = 51/73 (69.86%), Query Frame = 1

Query:    4 EASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 222
            EA VLND WVS+P+GSE+S  +   R +  E A        LF+CEDERF+IDMVI+S   T+++LEPLAEE+
Sbjct:  333 EAKVLNDQWVSIPIGSEESYSFKHMRKNQYEEA--------LFKCEDERFEIDMVIDSNMCTIRVLEPLAEEI 397

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BLAST of jgi.p|Trimin1|156254 vs. uniprot
Match: A0A7S3XWL9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWL9_HETAK)

HSP 1 Score: 75.9 bits (185), Expect = 1.760e-14
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 1

Query:    1 MEASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 222
            +E  VLNDTWVSVPVGSED+  +   R +  E A        LFRCEDERF++DMVI+S A+    LEPLA EV
Sbjct:  104 LEHRVLNDTWVSVPVGSEDNYSFKHMRKNQYEEA--------LFRCEDERFEVDMVIDSNAAAAAALEPLAREV 169

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BLAST of jgi.p|Trimin1|156254 vs. uniprot
Match: A0A0P1AYW3_PLAHL (Paired amphipathic helix protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYW3_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 2.310e-14
Identity = 40/74 (54.05%), Postives = 49/74 (66.22%), Query Frame = 1

Query:    1 MEASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 222
            +E  V NDTWVSVP GSED S     +    E         ALF+CEDERF+IDMVIE+ AST+ +LEPLA+E+
Sbjct:  726 LEKEVCNDTWVSVPTGSEDFSFKSMRKNQYEE---------ALFKCEDERFEIDMVIEANASTISILEPLAQEI 790

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BLAST of jgi.p|Trimin1|156254 vs. uniprot
Match: A0A0W8DMG5_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DMG5_PHYNI)

HSP 1 Score: 74.3 bits (181), Expect = 8.020e-14
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 1

Query:    1 MEASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 222
            +E  V ND+WVSVP GSED S     +    E         ALF+CEDERF+IDMVIE+ AST+ +LEPLA+E+
Sbjct:  489 LEKEVCNDSWVSVPTGSEDFSFKSMRKNQYEE---------ALFKCEDERFEIDMVIEANASTISILEPLAQEI 553

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BLAST of jgi.p|Trimin1|156254 vs. uniprot
Match: A0A225WNY7_9STRA (Paired amphipathic helix protein Sin3 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WNY7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.040e-14
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 1

Query:    1 MEASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 222
            +E  V ND+WVSVP GSED S     +    E         ALF+CEDERF+IDMVIE+ AST+ +LEPLA+E+
Sbjct:  714 LEKQVCNDSWVSVPTGSEDFSFKSMRKNQYEE---------ALFKCEDERFEIDMVIEANASTISILEPLAQEI 778

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BLAST of jgi.p|Trimin1|156254 vs. uniprot
Match: W2Q6Y5_PHYPN (HDAC_interact domain-containing protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2Q6Y5_PHYPN)

HSP 1 Score: 74.3 bits (181), Expect = 8.050e-14
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 1

Query:    1 MEASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 222
            +E  V ND+WVSVP GSED S     +    E         ALF+CEDERF+IDMVIE+ AST+ +LEPLA+E+
Sbjct:  731 LEKEVCNDSWVSVPTGSEDFSFKSMRKNQYEE---------ALFKCEDERFEIDMVIEANASTISILEPLAQEI 795

[Close]

BLAST of jgi.p|Trimin1|156254 vs. uniprot
Match: A0A7S2SFF8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SFF8_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 1.100e-13
Identity = 39/71 (54.93%), Postives = 49/71 (69.01%), Query Frame = 1

Query:   10 SVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDERFKIDMVIESTASTVKLLEPLAEEV 222
            SVLNDTWVSVP+GSEDSS     R    E         ALF+CED+R++IDMVI+S  + ++ LEPLA+EV
Sbjct:  619 SVLNDTWVSVPLGSEDSSSKNHRRNQYEE---------ALFKCEDDRYEIDMVIDSNKAAIRALEPLAQEV 680

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|156254 vs. uniprot

BLAST of jgi.p|Trimin1|156254 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZEE2_9STRA	4.300e-47	100.00	HDAC_interact domain-containing protein (Fragment)...	[more]
A0A835ZD67_9STRA	1.870e-20	67.57	HDAC_interact domain-containing protein n=1 Tax=Tr...	[more]
A0A7S3HNY2_9STRA	6.470e-15	53.42	Hypothetical protein (Fragment) n=1 Tax=Spumella e...	[more]
A0A7S3MGY4_9STRA	6.590e-15	53.42	Hypothetical protein (Fragment) n=2 Tax=Spumella e...	[more]
A0A7S3XWL9_HETAK	1.760e-14	55.41	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A0P1AYW3_PLAHL	2.310e-14	54.05	Paired amphipathic helix protein n=1 Tax=Plasmopar...	[more]
A0A0W8DMG5_PHYNI	8.020e-14	52.70	Uncharacterized protein n=1 Tax=Phytophthora nicot...	[more]
A0A225WNY7_9STRA	8.040e-14	52.70	Paired amphipathic helix protein Sin3 n=1 Tax=Phyt...	[more]
W2Q6Y5_PHYPN	8.050e-14	52.70	HDAC_interact domain-containing protein n=15 Tax=P...	[more]
A0A7S2SFF8_9STRA	1.100e-13	54.93	Hypothetical protein n=1 Tax=labyrinthulid quahog ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_115	contig	Contig_115:459187..460014 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|156254\|gw1.115.108.1
Description	Paired amphipathic helix protein Sin3. Source PGD
COG category	B
Max annot lvl	121069\|Pythiales
EggNOG OGs	COG5602@1\|root,KOG4204@2759\|Eukaryota,1MATT@121069\|Pythiales
Evalue	9.63e-15
Seed ortholog	42099.EPrPV00000023024
Hectar predicted targeting category	other localisation
TranscriptId	156576
Track	FilteredModels1
ProteinId	156254

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|156254	gene_11701	Tribonema minus UTEX_B_3156	gene	Contig_115 459187..460014 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_11701_1	exon_11701_1	Tribonema minus UTEX_B_3156	exon	Contig_115 459187..459306 +
exon_11701_2	exon_11701_2	Tribonema minus UTEX_B_3156	exon	Contig_115 459913..460014 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_11701	CDS_11701	Tribonema minus UTEX_B_3156	CDS	Contig_115 459187..459306 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|156254	Trimin1\|156254\|gw1.115.108.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_115 459187..460014 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_115:459187..460014+
coding sequence from alignment at Contig_115:459187..460014+

spliced messenger RNA

>mRNA_11701 ID=mRNA_11701|Name=jgi.p|Trimin1|156254|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_115:459187..460014+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGCTTCTGTGCTCAACGACACGTGGGTCAGCGTCCCCGTCGGCAG
CGAGGACAGCTCCAAGTACGTGTGGGCGCGGCTGCACCTGCGTGAGCGCG
CATGCTGTCCGTGTGGTGCCGTGGCGCTGTTCCGGTGTGAGGACGAGCGG
TTTAAGATAGACATGGTCATCGAAAGCACCGCATCCACCGTCAAGCTGTT
GGAGCCGCTGGCGGAGGAGGTG

protein sequence of jgi.p|Trimin1|156254

>Trimin1|156254|gw1.115.108.1 ID=Trimin1|156254|gw1.115.108.1|Name=jgi.p|Trimin1|156254|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
MEASVLNDTWVSVPVGSEDSSKYVWARLHLRERACCPCGAVALFRCEDER
FKIDMVIESTASTVKLLEPLAEEV

mRNA from alignment at Contig_115:459187..460014+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11701 ID=mRNA_11701|Name=jgi.p|Trimin1|156254|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=828bp|location=Sequence derived from alignment at Contig_115:459187..460014+ (Tribonema minus UTEX_B_3156 )
ATGGAGGCTTCTGTGCTCAACGACACGTGGGTCAGCGTCCCCGTCGGCAG
CGAGGACAGCTCCAAGTACGTGTGGGCGCGGCTGCACCTGCGTGAGCGCG
CATGCTGTCCGTGTGGTGCCGTGCCTGTACAAGCACGCACGACGCGTGTC
ACACAGCATGAGGATTAGAATTAGGACGCAGGGTTAGGGTTAGGGTCAGG
TCTGCCGCCGAGCAGTGCAGTTGTCATTGCATCGCGGCGATACCTGCGTT
TGCGTGGCGCCCATGTATGGGGACCGTGGTGCCATGCCCGCAGCGTGCAA
GACGCGAGTCGCACGGCACTGCTTGTCCGCTGCCGGCAGCTTGGCTGCCG
AGCTACGCAGTCGAAGGTGCGTTGCGGCAACGTGCTCATGGAGTTGCGGG
GAGCTGAGGGCGCTTGCAGCCTTTGCTGCGACGCTTATCAGCACGCTTGA
AACGGAGAAGCAGCGATCAACAGCATAGGCCATGCGCACCGCGAAACATG
TTCTGAAGTGCATGTGTGAACTCAGCTGCAGTCCCACGCGTGCAGTGCAG
CGCCGTGGCTTCGCATATGTGCATACATACATGCCCACTGTGCACCGCAG
CAGAGACTGTGCCGTGCTGAACTTCCTCCCTCCCTCCCCCTCCCTGCGCT
CTTTGCCCCTCCCCCCCCCCCCCCCCCCCTCTCCCCCCCAAACAGCTTCA
CGCAGATGCGCAGAAACAAGTAATAGGTGGCGCTGTTCCGGTGTGAGGAC
GAGCGGTTTAAGATAGACATGGTCATCGAAAGCACCGCATCCACCGTCAA
GCTGTTGGAGCCGCTGGCGGAGGAGGTG

Coding sequence (CDS) from alignment at Contig_115:459187..460014+

>mRNA_11701 ID=mRNA_11701|Name=jgi.p|Trimin1|156254|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_115:459187..460014+ (Tribonema minus UTEX_B_3156 )
ATGGAGGCTTCTGTGCTCAACGACACGTGGGTCAGCGTCCCCGTCGGCAG
CGAGGACAGCTCCAAGTACGTGTGGGCGCGGCTGCACCTGCGTGAGCGCG
CATGCTGTCCGTGTGGTGCCGTGGCGCTGTTCCGGTGTGAGGACGAGCGG
TTTAAGATAGACATGGTCATCGAAAGCACCGCATCCACCGTCAAGCTGTT
GGAGCCGCTGGCGGAGGAGGTG