mRNA_11633 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A836CN42_9STRA (Glutaredoxin subgroup I n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN42_9STRA) HSP 1 Score: 234 bits (597), Expect = 9.460e-77 Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 1 Query: 73 MSSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSSNLSKM 420 MSSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSSNLSKM Sbjct: 1 MSSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSSNLSKM 116
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A9NP69_PICSI (Glutaredoxin domain-containing protein n=2 Tax=Picea sitchensis TaxID=3332 RepID=A9NP69_PICSI) HSP 1 Score: 103 bits (256), Expect = 2.890e-24 Identity = 59/131 (45.04%), Postives = 80/131 (61.07%), Query Frame = 1 Query: 16 VARGLFSSRRVYCVPTVRSMSSSSGEAVK-AVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELD--GHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVR 399 V R + +SR V +R+ + SSG +K +++ +I+ V+VY K CP+C + K L EDL ++P +ELD G Q AL LTGQ TVPNVFIGG H+GGC DTM Q+G+L LL AGV+ Sbjct: 51 VLRQVANSRSYGAVGPIRATAGSSGSQIKESIETEINENPVVVYSKTWCPYCQQAKGLFEDLGVKPY--VVELDELGAAERHVQNALEGLTGQSTVPNVFIGGKHIGGCSDTMELHQNGELIPLLSAAGVK 179
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A2P6U4E8_CHLSO (Glutaredoxin family isoform 1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U4E8_CHLSO) HSP 1 Score: 102 bits (254), Expect = 3.500e-24 Identity = 57/119 (47.90%), Postives = 73/119 (61.34%), Query Frame = 1 Query: 58 PTVRSM---SSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRS 402 P R+M +SS + VQ K V+VY K CP+C VK L E L + + +ELD G+ Q AL +TG+RTVP VF+GG HVGGCDDT+AA SGKLK LL+ AGV++ Sbjct: 44 PGARAMGAAASSEADFTAMVQQKNADNPVMVYSKTYCPYCSEVKSLFERLGVNAK--VVELDELADGSKVQEALATVTGRRTVPQVFVGGNHVGGCDDTVAAYNSGKLKTLLEAAGVQA 160
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A1D2A3R0_AUXPR (Glutaredoxin domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A3R0_AUXPR) HSP 1 Score: 100 bits (250), Expect = 1.310e-23 Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 1 Query: 61 TVRSMSSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGV 396 T R+MS G+ V +++K V+VY K CP+C VK L + L ++ + IELD G Q+AL ++ G++TVP VF+GG H+GGCDDTMAA SGKLKE+L +AG+ Sbjct: 50 TTRAMS---GDLVATLKEKNKKNPVVVYSKTYCPYCAEVKSLFQKLKVDAK--VIELDSLADGNDVQQALFEVVGKKTVPQVFVGGQHIGGCDDTMAANDSGKLKEMLKEAGL 157
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A0D6R8L1_ARACU (Glutaredoxin domain-containing protein n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0D6R8L1_ARACU) HSP 1 Score: 98.6 bits (244), Expect = 4.350e-23 Identity = 58/119 (48.74%), Postives = 74/119 (62.18%), Query Frame = 1 Query: 52 CVPTVRSMSSSSGEAVKAVQDK----IDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAG 393 C+ V S SS S E++ +K + S V+V+ K CP+C +VK LL L + + +ELD GA Q AL + TGQRTVPNVFIGGTH+GGCDDT+A SGKL LL +AG Sbjct: 11 CMGLVAS-SSKSPESITTAMEKAKAVVSSNPVVVFSKTYCPYCTQVKQLLSRLGAKTK--VVELDTESDGADIQSALKEWTGQRTVPNVFIGGTHIGGCDDTVAKHNSGKLVPLLSEAG 126
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A4S8JR44_MUSBA (Glutaredoxin domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8JR44_MUSBA) HSP 1 Score: 97.8 bits (242), Expect = 4.680e-23 Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1 Query: 94 AVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSS 405 A++ ++ + S V+V+ K CPFC RVK LL+ L + IELD G+ Q AL + TGQRTVPNVFIGG H+GGCDDT+A Q GKL+ LL +AG +S Sbjct: 2 ALEKAKETVSSNPVVVFSKTFCPFCVRVKKLLDQLGARYKA--IELDVESDGSKIQAALAEWTGQRTVPNVFIGGKHIGGCDDTLAKHQQGKLEPLLIEAGALAS 104
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A6A2XY04_HIBSY (Glutaredoxin-C5 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XY04_HIBSY) HSP 1 Score: 98.2 bits (243), Expect = 2.140e-22 Identity = 55/117 (47.01%), Postives = 73/117 (62.39%), Query Frame = 1 Query: 61 TVRSMSSSSGEAVK-AVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELD--GHVGASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRS 402 ++R M+SSSG ++ +V+ + V+VY K CP+ VK L + L ++P IELD G G+ Q L QLTGQRTVPNVFIGG HVGGC DT Q+G+L+ LL A +S Sbjct: 58 SIRGMASSSGSDLEESVKKTVADNPVVVYSKSWCPYSSEVKSLFKKLGVQPS--VIELDELGAQGSQLQDVLGQLTGQRTVPNVFIGGKHVGGCTDTFELYQNGELESLLSDANAKS 172
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A2P6VIQ9_9CHLO (OPI10-like protein isoform A n=2 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VIQ9_9CHLO) HSP 1 Score: 103 bits (256), Expect = 4.770e-22 Identity = 55/111 (49.55%), Postives = 71/111 (63.96%), Query Frame = 1 Query: 76 SSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSS 405 SS+ G+ V + K V+VY K CP+C VK L L + + +ELD G S Q+AL + G+RTVP VFIGG HVGGCDDT+AA+ SGKLKELL AGV+++ Sbjct: 4 SSAGGDLVAQINAKNSENSVMVYSKTYCPYCSEVKSLFNKLGVSAK--VVELDELADGDSLQQALASVCGRRTVPQVFIGGKHVGGCDDTVAAMNSGKLKELLAAAGVQAT 112
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: GRXC6_ORYSJ (Glutaredoxin-C6 n=15 Tax=cellular organisms TaxID=131567 RepID=GRXC6_ORYSJ) HSP 1 Score: 95.1 bits (235), Expect = 6.200e-22 Identity = 53/106 (50.00%), Postives = 66/106 (62.26%), Query Frame = 1 Query: 94 AVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKAGVRSSN 408 A+ ++ + S V+VY K CPFC RVK L E L + IELDG G+ Q AL + TGQRTVPNVFI G H+GGCDDT+A GKL LL +AG +S+ Sbjct: 2 ALAKAKETVASAPVVVYSKSYCPFCVRVKKLFEQLGATFKA--IELDGESDGSELQSALAEWTGQRTVPNVFINGKHIGGCDDTLALNNEGKLVPLLTEAGAIASS 105
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Match: A0A197KDE7_9FUNG (Glutaredoxin n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197KDE7_9FUNG) HSP 1 Score: 95.1 bits (235), Expect = 6.750e-22 Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 1 Query: 73 MSSSSGEAVKA-VQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFIELDGHV-GASTQRALMQLTGQRTVPNVFIGGTHVGGCDDTMAAVQSGKLKELLDKA 390 M+S +V+ ++ I S V+++ K CP+C RVKDL +DLA+ + +ELD H G Q L LTGQ +VPNVF+ GTHVGG DDT AA SG+LKELLDK+ Sbjct: 1 MASQLAASVRTLIKTSIASNPVMIFSKSYCPYCLRVKDLFDDLAVPYKA--LELDEHENGFEIQADLKTLTGQTSVPNVFVKGTHVGGSDDTHAARDSGRLKELLDKS 106 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|9722 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11633 ID=mRNA_11633|Name=jgi.p|Trimin1|9722|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=585bp|location=Sequence derived from alignment at Contig_115:28421..30033+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGGTAGCGACTAGGGTGGCCAGAGGCCTGTTTAGCTCTCGCAGAGTGTAback to top protein sequence of jgi.p|Trimin1|9722 >Trimin1|9722|CE9721_89 ID=Trimin1|9722|CE9721_89|Name=jgi.p|Trimin1|9722|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=117bp MSSSSGEAVKAVQDKIDSTKVLVYEKWGCPFCGRVKDLLEDLALEPEPEFback to top mRNA from alignment at Contig_115:28421..30033+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11633 ID=mRNA_11633|Name=jgi.p|Trimin1|9722|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1613bp|location=Sequence derived from alignment at Contig_115:28421..30033+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_115:28421..30033+ >mRNA_11633 ID=mRNA_11633|Name=jgi.p|Trimin1|9722|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=351bp|location=Sequence derived from alignment at Contig_115:28421..30033+ (Tribonema minus UTEX_B_3156 )back to top |