mRNA_12561 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|145489
Unique NamemRNA_12561
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A836C9Y2_9STRA (Sm protein F n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Y2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.870e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAIASNGQ 258
            MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAIASNGQ
Sbjct:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAIASNGQ 86
[Close]
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: D8RPX7_SELML (Sm protein F n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RPX7_SELML)

HSP 1 Score: 136 bits (343), Expect = 2.430e-40
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:   10 PINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEE 234
            P+NPKPFL ELTGKAV+VKLKWGMEY+GFL+SVDSYMNLQL NTEE+++GQ AG+LGEVLIRCNNVLY+R  PEE
Sbjct:    5 PVNPKPFLNELTGKAVMVKLKWGMEYKGFLISVDSYMNLQLGNTEEFIDGQFAGNLGEVLIRCNNVLYLRGIPEE 79
[Close]
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A6J1CSK0_MOMCH (Sm protein F n=2 Tax=fabids TaxID=91835 RepID=A0A6J1CSK0_MOMCH)

HSP 1 Score: 136 bits (343), Expect = 2.660e-40
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 243
            MS P+NPKPFL  LTGK V+VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  GSLGE+LIRCNNVLY+R  PE+  I
Sbjct:    1 MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEI 81
[Close]
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A5B8MID8_9CHLO (Sm protein F n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MID8_9CHLO)

HSP 1 Score: 136 bits (342), Expect = 2.900e-40
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEE 234
            MS P+NPKPF+ +LTGKAVLVKLKWGMEY+G L+SVDSYMNLQLANTEE+V+GQL G+LGEVLIRCNNVLY+RA PE+
Sbjct:    1 MSGPMNPKPFVKDLTGKAVLVKLKWGMEYKGLLVSVDSYMNLQLANTEEFVDGQLTGNLGEVLIRCNNVLYMRAVPED 78
[Close]
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A6J1KQT2_CUCMA (Sm protein F n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1KQT2_CUCMA)

HSP 1 Score: 136 bits (342), Expect = 3.770e-40
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 1 
Query:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 243
            MS P+NPKPFL  LTGK V+VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  GSLGE+LIRCNNVLY+R  PE+  I
Sbjct:    1 MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEI 81
[Close]
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 134 bits (338), Expect = 1.540e-39
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 1 
Query:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 243
            MS P+NPKPFL  LTGK V+VKLKWGMEY+GFL SVDSYMNLQLANTEEY++GQ  G+LGE+LIRCNNVLY+R  PE+  I
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEI 81
[Close]
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A059CKE6_EUCGR (Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A059CKE6_EUCGR)

HSP 1 Score: 134 bits (336), Expect = 3.200e-39
Identity = 59/75 (78.67%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:   10 PINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEE 234
            P+NPKPFL  LTGK V+VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  GSLGE+LIRCNNVLY+R  PE+
Sbjct:    5 PVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPED 79
[Close]
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 134 bits (336), Expect = 3.930e-39
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = 1 
Query:    4 SQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 243
            S P+NPKPFL  LTGK V+VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  G+LGE+LIRCNNVLY+R  PE+  I
Sbjct:   10 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEI 89
[Close]
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: M5XGF4_PRUPE (Sm protein F n=4 Tax=Prunus TaxID=3754 RepID=M5XGF4_PRUPE)

HSP 1 Score: 133 bits (335), Expect = 4.960e-39
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:   10 PINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 243
            P+NPKPFL  LTGK V+VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  G+LGE+LIRCNNVLY+R  PE+  I
Sbjct:    5 PVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEI 82
[Close]
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A803QDU2_CANSA (Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A803QDU2_CANSA)

HSP 1 Score: 133 bits (334), Expect = 6.450e-39
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 1 
Query:    4 SQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 243
            S P+NPKPFL  LTGK V VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  G+LGE+LIRCNNVLY+R  PE+  I
Sbjct:    3 SIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEI 82
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9Y2_9STRA2.870e-55100.00Sm protein F n=1 Tax=Tribonema minus TaxID=303371 ... [more]
D8RPX7_SELML2.430e-4081.33Sm protein F n=1 Tax=Selaginella moellendorffii Ta... [more]
A0A6J1CSK0_MOMCH2.660e-4076.54Sm protein F n=2 Tax=fabids TaxID=91835 RepID=A0A6... [more]
A0A5B8MID8_9CHLO2.900e-4080.77Sm protein F n=1 Tax=Chloropicon primus TaxID=1764... [more]
A0A6J1KQT2_CUCMA3.770e-4076.54Sm protein F n=3 Tax=Cucurbita TaxID=3660 RepID=A0... [more]
A0A6P9F5Z8_JUGRE1.540e-3975.31Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
A0A059CKE6_EUCGR3.200e-3978.67Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183... [more]
A0A7J6WA49_THATH3.930e-3975.00Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
M5XGF4_PRUPE4.960e-3975.64Sm protein F n=4 Tax=Prunus TaxID=3754 RepID=M5XGF... [more]
A0A803QDU2_CANSA6.450e-3975.00Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_78contigContig_78:602179..603089 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|145489|gw1.78.82.1
BRITEko00000,ko00001,ko00002,ko03032,ko03041
KEGG ModuleM00351,M00352,M00354,M00355,M00398
KEGG Pathwayko03040,map03040
KEGG koko:K11098
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005685,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0030532,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0071013,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
DescriptionSmall nuclear ribonucleoprotein
COG categoryA
Max annot lvl35493|Streptophyta
EggNOG OGsKOG3482@1|root,KOG3482@2759|Eukaryota,37V93@33090|Viridiplantae,3GJP3@35493|Streptophyta,4JQC1@91835|fabids
Evalue4.35e-41
Seed ortholog3656.XP_008463776.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSmall nuclear ribonucleoprotein SmF
Ec32 orthologEc-07_007380.1
TranscriptId145811
TrackFilteredModels1
ProteinId145489
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145489gene_12561Tribonema minus UTEX_B_3156 geneContig_78 602179..603089 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145489Trimin1|145489|gw1.78.82.1Tribonema minus UTEX_B_3156 polypeptideContig_78 602179..603089 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12561_2exon_12561_2Tribonema minus UTEX_B_3156 exonContig_78 602179..602290 -
exon_12561_1exon_12561_1Tribonema minus UTEX_B_3156 exonContig_78 602944..603089 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12561CDS_12561Tribonema minus UTEX_B_3156 CDSContig_78 602944..603089 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12561 ID=mRNA_12561|Name=jgi.p|Trimin1|145489|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=258bp|location=Sequence derived from alignment at Contig_78:602179..603089- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCAACCGATAAACCCAAAGCCCTTCCTGACGGAGCTCACCGGGAA
GGCAGTGCTGGTGAAGTTAAAGTGGGGCATGGAGTACCGGGGATTCTTGC
TCAGCGTGGACAGCTACATGAACCTGCAGCTCGCCAACACTGAAGAATAC
GTAAACGGGCAGCTGGCGGGATCGCTGGGGGAGGTGCTGATTCGCTGCAA
CAACGTGCTGTACATTAGGGCTGCACCGGAAGAGGGGGCGATAGCTAGCA
ACGGACAA
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protein sequence of jgi.p|Trimin1|145489

>Trimin1|145489|gw1.78.82.1 ID=Trimin1|145489|gw1.78.82.1|Name=jgi.p|Trimin1|145489|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=86bp
MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEY
VNGQLAGSLGEVLIRCNNVLYIRAAPEEGAIASNGQ
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mRNA from alignment at Contig_78:602179..603089-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12561 ID=mRNA_12561|Name=jgi.p|Trimin1|145489|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=911bp|location=Sequence derived from alignment at Contig_78:602179..603089- (Tribonema minus UTEX_B_3156 )
ATGTCGCAACCGATAAACCCAAAGCCCTTCCTGACGGAGCTCACCGGGAA
GGCAGTGCTGGTGAAGTTAAAGTGGGGCATGGAGTACCGGGGATTCTTGC
TCAGCGTGGACAGCTACATGAACCTGCAGCTCGCCAACACTGAAGAGTGA
GTGCAAGGAGTCATGAAGTGCAATCGCCCGCTTGTGTTGCAGTTAAGTTG
CCTCTGCAAAACGAAACCAAGAAGTTGGCAGGATCTGCATCTGCTGCACC
TGGCCTGCGCCAGGGTTAAGCTGCATAGCTCTGCGCTGCATGTACAAGGC
TTTCATTGGCTGGATCTCTGGCCGTGACGACTGCATTTCTCTCCCTGAGT
GTTGAAGTGCAATGGTTTTTTAGTCTGCAAGGAATTGCTGCTGCATCCGT
CCTCAGTGATCTGCACAGCAAGGTGTTTTTCGTCAGGTGTGACTGCTGCG
TCCATCCTCAGGATTTGCTGCTGCAGACGGCGTGCCCCATTGGCGCTGCC
TTTGCTGCATAGCTCTTCGCTGCATGTACGAGGCTGTCAGAGGCGAGATA
CCTACTGTTGACGACTGCATTTTATTCCCCAGAGTTGCAGTGCAATTGTT
CAGCGGCGTGCTGAACTGCAAAATCAATAAGTTTTGGTCAATGATGATTT
GCTGTTGCGTTTGACCTCAGGATTTGCTGCTGCATTTGGCCTGCCGCATA
ATGCGCTGCCTTTGCGGCGCAGACCTTTGCTGCATGCACGATGCTGTCAA
AGTCTGGACTTCTGGTGTGTTGACGACTGCATTCTCCTCCCGATTGCAGA
TACGTAAACGGGCAGCTGGCGGGATCGCTGGGGGAGGTGCTGATTCGCTG
CAACAACGTGCTGTACATTAGGGCTGCACCGGAAGAGGGGGCGATAGCTA
GCAACGGACAA
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Coding sequence (CDS) from alignment at Contig_78:602179..603089-

>mRNA_12561 ID=mRNA_12561|Name=jgi.p|Trimin1|145489|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=258bp|location=Sequence derived from alignment at Contig_78:602179..603089- (Tribonema minus UTEX_B_3156 )
ATGTCGCAACCGATAAACCCAAAGCCCTTCCTGACGGAGCTCACCGGGAA
GGCAGTGCTGGTGAAGTTAAAGTGGGGCATGGAGTACCGGGGATTCTTGC
TCAGCGTGGACAGCTACATGAACCTGCAGCTCGCCAACACTGAAGAATAC
GTAAACGGGCAGCTGGCGGGATCGCTGGGGGAGGTGCTGATTCGCTGCAA
CAACGTGCTGTACATTAGGGCTGCACCGGAAGAGGGGGCGATAGCTAGCA
ACGGACAA
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