Trimin1|145489|gw1.78.82.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|145489
Unique NameTrimin1|145489|gw1.78.82.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length86
Homology
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A836C9Y2_9STRA (Sm protein F n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Y2_9STRA)

HSP 1 Score: 174 bits (441), Expect = 2.870e-55
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 0
Query:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAIASNGQ 86
            MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAIASNGQ
Sbjct:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAIASNGQ 86          
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: D8RPX7_SELML (Sm protein F n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RPX7_SELML)

HSP 1 Score: 136 bits (343), Expect = 2.430e-40
Identity = 61/75 (81.33%), Postives = 70/75 (93.33%), Query Frame = 0
Query:    4 PINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEE 78
            P+NPKPFL ELTGKAV+VKLKWGMEY+GFL+SVDSYMNLQL NTEE+++GQ AG+LGEVLIRCNNVLY+R  PEE
Sbjct:    5 PVNPKPFLNELTGKAVMVKLKWGMEYKGFLISVDSYMNLQLGNTEEFIDGQFAGNLGEVLIRCNNVLYLRGIPEE 79          
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A6J1CSK0_MOMCH (Sm protein F n=2 Tax=fabids TaxID=91835 RepID=A0A6J1CSK0_MOMCH)

HSP 1 Score: 136 bits (343), Expect = 2.660e-40
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 0
Query:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 81
            MS P+NPKPFL  LTGK V+VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  GSLGE+LIRCNNVLY+R  PE+  I
Sbjct:    1 MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPEDEEI 81          
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A5B8MID8_9CHLO (Sm protein F n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MID8_9CHLO)

HSP 1 Score: 136 bits (342), Expect = 2.900e-40
Identity = 63/78 (80.77%), Postives = 73/78 (93.59%), Query Frame = 0
Query:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEE 78
            MS P+NPKPF+ +LTGKAVLVKLKWGMEY+G L+SVDSYMNLQLANTEE+V+GQL G+LGEVLIRCNNVLY+RA PE+
Sbjct:    1 MSGPMNPKPFVKDLTGKAVLVKLKWGMEYKGLLVSVDSYMNLQLANTEEFVDGQLTGNLGEVLIRCNNVLYMRAVPED 78          
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A6J1KQT2_CUCMA (Sm protein F n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1KQT2_CUCMA)

HSP 1 Score: 136 bits (342), Expect = 3.770e-40
Identity = 62/81 (76.54%), Postives = 71/81 (87.65%), Query Frame = 0
Query:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 81
            MS P+NPKPFL  LTGK V+VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  GSLGE+LIRCNNVLY+R  PE+  I
Sbjct:    1 MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLRGVPEDEEI 81          
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A6P9F5Z8_JUGRE (Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6P9F5Z8_JUGRE)

HSP 1 Score: 134 bits (338), Expect = 1.540e-39
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 0
Query:    1 MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 81
            MS P+NPKPFL  LTGK V+VKLKWGMEY+GFL SVDSYMNLQLANTEEY++GQ  G+LGE+LIRCNNVLY+R  PE+  I
Sbjct:    1 MSIPVNPKPFLNNLTGKPVIVKLKWGMEYKGFLASVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEI 81          
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A059CKE6_EUCGR (Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A059CKE6_EUCGR)

HSP 1 Score: 134 bits (336), Expect = 3.200e-39
Identity = 59/75 (78.67%), Postives = 68/75 (90.67%), Query Frame = 0
Query:    4 PINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEE 78
            P+NPKPFL  LTGK V+VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  GSLGE+LIRCNNVLY+R  PE+
Sbjct:    5 PVNPKPFLNNLTGKPVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGSLGEILIRCNNVLYLRGVPED 79          
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A7J6WA49_THATH (Sm protein F n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6WA49_THATH)

HSP 1 Score: 134 bits (336), Expect = 3.930e-39
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = 0
Query:    2 SQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 81
            S P+NPKPFL  LTGK V+VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  G+LGE+LIRCNNVLY+R  PE+  I
Sbjct:   10 SVPVNPKPFLNNLTGKPVMVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEI 89          
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: M5XGF4_PRUPE (Sm protein F n=4 Tax=Prunus TaxID=3754 RepID=M5XGF4_PRUPE)

HSP 1 Score: 133 bits (335), Expect = 4.960e-39
Identity = 59/78 (75.64%), Postives = 69/78 (88.46%), Query Frame = 0
Query:    4 PINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 81
            P+NPKPFL  LTGK V+VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  G+LGE+LIRCNNVLY+R  PE+  I
Sbjct:    5 PVNPKPFLNNLTGKTVIVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEI 82          
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Match: A0A803QDU2_CANSA (Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183 RepID=A0A803QDU2_CANSA)

HSP 1 Score: 133 bits (334), Expect = 6.450e-39
Identity = 60/80 (75.00%), Postives = 69/80 (86.25%), Query Frame = 0
Query:    2 SQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEYVNGQLAGSLGEVLIRCNNVLYIRAAPEEGAI 81
            S P+NPKPFL  LTGK V VKLKWGMEY+GFL+SVDSYMNLQLANTEEY++GQ  G+LGE+LIRCNNVLY+R  PE+  I
Sbjct:    3 SIPVNPKPFLNNLTGKTVFVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQFTGNLGEILIRCNNVLYLRGVPEDEEI 82          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|145489 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9Y2_9STRA2.870e-55100.00Sm protein F n=1 Tax=Tribonema minus TaxID=303371 ... [more]
D8RPX7_SELML2.430e-4081.33Sm protein F n=1 Tax=Selaginella moellendorffii Ta... [more]
A0A6J1CSK0_MOMCH2.660e-4076.54Sm protein F n=2 Tax=fabids TaxID=91835 RepID=A0A6... [more]
A0A5B8MID8_9CHLO2.900e-4080.77Sm protein F n=1 Tax=Chloropicon primus TaxID=1764... [more]
A0A6J1KQT2_CUCMA3.770e-4076.54Sm protein F n=3 Tax=Cucurbita TaxID=3660 RepID=A0... [more]
A0A6P9F5Z8_JUGRE1.540e-3975.31Sm protein F n=4 Tax=Mesangiospermae TaxID=1437183... [more]
A0A059CKE6_EUCGR3.200e-3978.67Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183... [more]
A0A7J6WA49_THATH3.930e-3975.00Sm protein F n=1 Tax=Thalictrum thalictroides TaxI... [more]
M5XGF4_PRUPE4.960e-3975.64Sm protein F n=4 Tax=Prunus TaxID=3754 RepID=M5XGF... [more]
A0A803QDU2_CANSA6.450e-3975.00Sm protein F n=5 Tax=Mesangiospermae TaxID=1437183... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..74
e-value: 6.2E-24
score: 95.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 10..73
e-value: 2.9E-21
score: 74.9
NoneNo IPR availablePIRSFPIRSF006609snRNP_SmFcoord: 1..82
e-value: 5.1E-37
score: 123.6
NoneNo IPR availableGENE3D2.30.30.100coord: 1..77
e-value: 8.0E-34
score: 117.2
NoneNo IPR availablePANTHERPTHR11021:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN Fcoord: 1..80
IPR016487Sm-like protein Lsm6/SmFPANTHERPTHR11021SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-Fcoord: 1..80
IPR034100Small nuclear ribonucleoprotein FCDDcd01722Sm_Fcoord: 6..74
e-value: 6.85518E-47
score: 141.966
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 7..76

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_78contigContig_78:602179..603089 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|145489mRNA_12561Tribonema minus UTEX_B_3156 mRNAContig_78 602179..603089 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|145489|gw1.78.82.1 ID=Trimin1|145489|gw1.78.82.1|Name=jgi.p|Trimin1|145489|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=86bp
MSQPINPKPFLTELTGKAVLVKLKWGMEYRGFLLSVDSYMNLQLANTEEY
VNGQLAGSLGEVLIRCNNVLYIRAAPEEGAIASNGQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR016487Lsm6/sSmF
IPR034100Sm_F
IPR010920LSM_dom_sf