mRNA_12501 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351004
Unique NamemRNA_12501
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351004 vs. uniprot
Match: A0A836C8S6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8S6_9STRA)

HSP 1 Score: 261 bits (667), Expect = 2.130e-86
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 1 
Query:    1 MAHRERQIYVFTEILSPLRKKGSDAPAGIIYVFPAIMFLSXXXXKARDGVVKLAGKRRFKAIVXXXXXXXXXXXXXXXXXXXXXVGIGIIMGLLGAIISVLESFFPHILGAAAARHETRGAAHSSAPLYCVARCQAALDCRAHAAAFADIGLGGXXXXXXGGLGXXXXXXXXXXXXXXSSDVERRWVRQM 570
            MAHRERQIYVFTEILSPLRKKGSDAPAGIIYVFPAIMFLSXXXXKARDGVVKLAGKRRFKAIVXXXXXXXXXXXXXXXXXXXXXVGIGIIMGLLGAIISVLESFFPHILGAAAARHETRGAAHSSAPLYCVARCQAALDCRAHAAAFADIGLGGXXXXXXGGLGXXXXXXXXXXXXXXSSDVERRWVRQM
Sbjct:    1 MAHRERQIYVFTEILSPLRKKGSDAPAGIIYVFPAIMFLSXXXXKARDGVVKLAGKRRFKAIVXXXXXXXXXXXXXXXXXXXXXVGIGIIMGLLGAIISVLESFFPHILGAAAARHETRGAAHSSAPLYCVARCQAALDCRAHAAAFADIGLGGXXXXXXGGLGXXXXXXXXXXXXXXSSDVERRWVRQM 190
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351004 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C8S6_9STRA2.130e-86100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:671102..676792 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351004|estExt_Genemark1.C_Ctg_770063
Hectar predicted targeting categoryother localisation
TranscriptId351326
TrackFilteredModels1
ProteinId351004
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351004gene_12501Tribonema minus UTEX_B_3156 geneContig_77 671102..676792 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351004Trimin1|351004|estExt_Genemark1.C_Ctg_770063Tribonema minus UTEX_B_3156 polypeptideContig_77 671102..676792 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12501_7exon_12501_7Tribonema minus UTEX_B_3156 exonContig_77 671102..671223 -
exon_12501_6exon_12501_6Tribonema minus UTEX_B_3156 exonContig_77 671363..671404 -
exon_12501_5exon_12501_5Tribonema minus UTEX_B_3156 exonContig_77 671874..671956 -
exon_12501_4exon_12501_4Tribonema minus UTEX_B_3156 exonContig_77 675025..675164 -
exon_12501_3exon_12501_3Tribonema minus UTEX_B_3156 exonContig_77 675379..675429 -
exon_12501_2exon_12501_2Tribonema minus UTEX_B_3156 exonContig_77 676531..676585 -
exon_12501_1exon_12501_1Tribonema minus UTEX_B_3156 exonContig_77 676713..676792 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12501CDS_12501Tribonema minus UTEX_B_3156 CDSContig_77 676713..676792 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12501 ID=mRNA_12501|Name=jgi.p|Trimin1|351004|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=573bp|location=Sequence derived from alignment at Contig_77:671102..676792- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCATCGCGAGCGGCAAATCTACGTGTTTACCGAGATCCTGTCGCC
GCTGCGCAAGAAGGGGAGTGATGCACCCGCCGGCATCATCTACGTGTTCC
CTGCCATCATGTTCCTGTCGCCGCTGCGCAAGAAGGCGAGGGACGGCGTC
GTGAAGCTGGCGGGCAAGCGGCGCTTTAAGGCTATCGTGAGGGACGGAGT
TGTGAAGCTGGCGGGCAAGCGCCGCTTCGAGGCCATTGGCAACTACGGTG
TTGTCGGTATCGGCATCATCATGGGTCTGCTGGGCGCCATCATCAGCGTC
CTGGAGTCGTTCTTCCCCCACATCCTAGGAGCGGCGGCGGCGCGGCACGA
GACGCGCGGCGCCGCGCACTCCAGCGCTCCGCTCTACTGCGTGGCGCGCT
GCCAAGCAGCGCTCGACTGCCGCGCGCATGCAGCAGCGTTCGCCGACATC
GGCCTCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGGCTCGGCGGCGGCAG
CGGCGGCGGCGGGCTCGGCGGCGGCAGCGGCGGCAGCAGCGACGTGGAGA
GGCGATGGGTACGGCAGATGTGA
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protein sequence of jgi.p|Trimin1|351004

>Trimin1|351004|estExt_Genemark1.C_Ctg_770063 ID=Trimin1|351004|estExt_Genemark1.C_Ctg_770063|Name=jgi.p|Trimin1|351004|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=191bp
MAHRERQIYVFTEILSPLRKKGSDAPAGIIYVFPAIMFLSPLRKKARDGV
VKLAGKRRFKAIVRDGVVKLAGKRRFEAIGNYGVVGIGIIMGLLGAIISV
LESFFPHILGAAAARHETRGAAHSSAPLYCVARCQAALDCRAHAAAFADI
GLGGGGGSGGGGLGGGSGGGGLGGGSGGSSDVERRWVRQM*
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mRNA from alignment at Contig_77:671102..676792-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12501 ID=mRNA_12501|Name=jgi.p|Trimin1|351004|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5691bp|location=Sequence derived from alignment at Contig_77:671102..676792- (Tribonema minus UTEX_B_3156 )
ATGGCTCATCGCGAGCGGCAAATCTACGTGTTTACCGAGATCCTGTCGCC
GCTGCGCAAGAAGGGGAGTGATGCACCCGCGTGTGTTGGGTTTCGCCGCA
GAGGCCGCAAGTGCAGACCGCAATCCAATTTGAATGGCTGCAGTGGGCCT
GCAAACTGGTGTGGTAACGGCGCTTAAAGTTAGGGTTTGGTGTATATGTA
ACGCGAGCGGCATCATCTACGTGTTCCCTGCCATCATGTTCCTGTCGCCG
CTGCGCAAGAAGGTGCAGCATGCGTATTGTGCACAGTTCCCGGCGCGGTG
AGTGGGGGTTGAGGTCGAAATTTTGATGAAGTTGAAGTTTTGTCACAATT
GAAGTTTTTTGAAGTCGAAGTTTTGGGTGAAAAGTTGATGCGACAAGTAG
CCGCGTCCCACTTGCATCACGTTCCTGGCCCGGTGAGGGTGAAAATTTTA
AAAACACTAAAGGCTGCAGTGCGCCTGCAAATGGGCGCGAGTTCAGCGCT
TCGGGATAGGGTTAGGGTCAAAGATCATGGCTGATCTGTAGCGCGAGCGG
CTTCATCCACGTGTTCCCCGCGATCATATTACTGTCGCTATTGCGCAAGA
ACGTGACAAACGCGCATTTTGCGTTTCAGCACAGGTGGAAGTGTTGTCCT
GACCAGGCTGTGGGGCACCTGTTGTTGAGCTTGGCACCAGCGCCTTCGCT
CACGGAGCGACGCTGAGAGCGTGGCTGCATTGATTATGGTAGTATTTCCG
GCAGCTGCAGCGGCGCGCTCCACTCTGCGCAAGACTTCAGTAGCCTACCT
CGTTGCACCTCAAATCTAGGCAAAGGGGGGGGGGGGGGGGGGGGGGGGGG
CATGACGCGTAGAGGGCGGTGGTCGATCATGGCAATGGCCTGCGCGCCAT
CATGACGCAACAGCTTTTTCGCAGTACCAACCCAAACCGTAACTTCAAGT
GAGAAGCGCGTCCACTCCAGATACATGTACAGTGCGATACCGCCTTAGGG
GTTAGGGTTAGGGTTGTGGCCTAACCCCAACCCCAAAACCTACCTCTCTA
AGCAGCTCACAGGCCATCTGGAAGTGCGTGGTGGGCGCTGCGCCTGTCTG
TGGGCAGTCAGTGTGTCTTACCATGCCTGCCTCTGAGAGCCAGCTTGCCA
CTCGCAATTACCACCGTCACGTGGGCCATGAAGTGCGGGACGGCGTCGTG
AAGCCTGCTTCAAGGCTATCGGCGGCTACGCGTGATCGGCGTCGGGCGTA
TCGTGGCCGCCGTAGCTGCCATTTCACCTCACAAGTACTCACTCACAAGC
GTATCTACAATCGTCATGGCGTAGCGTCTCACAATCACACCGCCGCGCGT
GTCGCAACGGCAGGCGAGGGACGGCGTCGTGAAGCTGGCGGGCAAGCGGC
GCTTTAAGGCTATCGTAGATATGTAATCGGCATCTGGCGTGTTATGGCCG
CCCACTGGCGCTGCCATTCCACCTCGCGAGTAATCACAAGCATGTCCCAC
AATCATCCTGACGTAGCCGCTCAATCTGCACGCAATGATACATGCGCAAT
TGTTCAAAAGTACTGCACATCGACATCGCACAACCTATCGACTCATGCTT
CACACCGCCGCGTATGTTCTCATGACAGGTGAGGGACGGAGTTGTGAAGC
TGGCGGGCAAGCGCCGCTTCGAGGCCATTGGCAACTACGGTGTTGTCGGT
ATCGGCATCATCATGGGTCTGCTGGGCGCCATCATCAGCGTCCTGGAGTC
GTTCTTCCCCCACATCCTGTCCCCTTAATTTCCATCGCTAAGAGGGCCTG
AGAAGGCCCCGCCGGCTGGTTTCCTATGGTTTCCTTTGAAGCTGGCTAGA
TGTGATCGGAGTGGCTTTGGCGAAATGGGGGGTGGGCAAAGGGGACGAGG
GGGGGGGGCAGCGGGGGGCTGAAACGTCAACACAGAACGCGAGCACAGCT
TGGAGCTGTGGCAGCACGCTATGTGCCTGTTGCGTATGCCACATGCAAGC
TGTTTGACTACGCTAAAGCTGGAACGGACTGCAGTGCCTGCCGCATGGCC
TGCGCAAGTGGCTGAGGATGAGCACTGCTTCGAGGTTGCATGGGAGCCTC
TGCTGCCCCGCAATATACTCGCGTGACTCCACAGTTAATTGGTTATTGTC
AGTTAGTTAGTGTGAGCGCGCTGTCTCTTCTTCACCTTCTGTGCCACAGT
GCCTGCGTTGTGTACCACAGCGCACCGTCACCGTCGCTTCACAAAATGCT
TGCCATGTTGTGCGCTTGAAATGATGTCAATGTGGTGGCTTTGTGGAGCG
CGTTTCGCGACAAGTCAGGTGCTTACAGCTGCTGACCGGATTTGAGGGAC
CCTCCACGCACCAATTAGGATAGTTTCCGGGAGCGCTGGGGCAGGAGCTG
CCATAGCACTGAGATGAGTTTCTTCGCTGTCACTGAGACAACACCGCTGC
CACCGAGACAACACCAAGTCCGAAGTGCAATTTTTGAGGTCATGTAGAGC
AGGTAGGAGCCTACGTTACCACGTGTGGTATACCTGATGAAGTGCTGTTG
CTGATGGCAAAGCAGGCGCCACTGCAGGCATAATGACAATGCAACAATTG
ATGTTACATTGACATTGCCCAACAGGCATACTTGCATACAATTTTGAACT
TGACATGCACATTTGCACACAACGCAATGCACACGAATTCTCAACAAGCA
ACATATCGCACACAGTACAAGCACACACACAAGTTGCACGCAGGAGACGA
GACAAAGAAGCGAACAGCACACATGTTGTAGAAAGCAGTGGCAGGTTTAC
AGATGAATGAATTACAATGATATTTATGGCACGGCTGCGAGCGCCGGTGG
CTGCATCAAGCTCACTCCAGCGCACAAAGCGCATCTCTGGGCAGGTACAT
GGCGAACTCCGGACTGCTCCGCATTACAATTCAACTGCAGATGCGAGGGG
CCTCCAGTACAGCTAAGTACAGGCACAGTACCAACTGCGCATGCCAGTTC
ATGGAGCGCGCGTTGGCAGAGCATGTGCCCTCTTGGTATTGACAACTGTC
TTGATCAGAAGGGCTGATGATGCCACATAATGTATTGCGGACCATGACAC
AGCTTGAGCTCCACCGCCGTAGGTGCATGGGATCATATAGGATGCGCCCT
AGAAGGACGTTGAGCGCGCTCGGTCCGCCGCAGAGTACATGCCACAGCAG
AAAGACAAATGCAGCAGTGCACAGCGCAGAAAGCGGGTCAGTCACGAACT
ATGGGCGATCATTGATGTGCTGAGCACTGACATTTCTTTCCCCCATCTGG
CTGACATGCTAGTTCACTGCGAGACAAGCCCAAGTCAGCATGAGCGATCG
ATGCTGACTGATTTGCGGACGCCATTGATGTCTTGCATGACGTGACATTT
GTGGTCAATGGGATCAGCACATGCAGCGATGCGCAAAGATGCAGGGTTTT
GAAAGCCTCACCTGCCCCCCGGTGGGCAGAAGCAGTCCCCGTGGCGCGGG
GACAGCGCCAGCGCCAAAGAGGGTAGGTAGGTAGGCAGCACACCTGAGGA
CAGCAAGCAGGGCATGTTGAGGTAAGCTCATGTGTGCAGCAGTAGGCAGG
TGATTGTAGAGGGGTCAATTTGGGGAATTGCTGCAGGCAAAGCGGAGCAG
CGGCGCTCGCAGCAAGGTGCAAGCAAATGCCACGCTACACATTGCACCAC
GACACATTTCAAAGTTCATTGACGAACGTCTGGCACAAGCAAAAGGTTTA
GACTCATTGCGCAGTCAGAACGGCAAAGCATTGTCGTTTTCAGCTACACT
CTCACCTTCCCTCCTCAGCGCTGTGCCCTGGCTCGTTGTCCACTGGCTTG
AGGTCATCAGCACTCTCGCTTCCGCTCTCGTTCCCGCTCCAGATCGCCCA
TTCCAAACATCCCACCTCGATCCCATAGCCAAGCTCAGCTCCAGTGATTG
CTCAACTCCACTCGCTGCGCCGCTCCTGCAGATGCTGCACCAGCCTCGTC
TCCCACTCTTGTTCCTGCTCCGAGGCGTCCAATCCAGAGCTCACAGCCAA
GTCAGCTCAAATGATGCCCAACTCCACTCGCTGCACTGCTCCTTCAGCCG
CTGCCCAGCCTCGTCGCCCACCACGTTGGCACCATCAGCAAGCGGAAGTG
GCCTGGGGCTGCGACACCCTCTCTAGGGAAGTGCAGAGCATGAAGCTCTA
CATTTAGGCTGGTCAGCCGGTGGGGCAAAGCGCTCTTGCAGTCTTCCGGG
AAGTACCAGCGCGCTTTGCTCAAGAGATGCAGCAACAGCGCCTCTGAGCA
AAGCGCTCTGGCAGTCCCGAAAGCCCAGGTTCTTTCAGAACGCCACCGAA
GCGGGTCTGTGCCTATCCGACACACGCTGCCGCTCCAGTGTAGCCAGCGT
TATGCCTTTTTTTGTCCACCAGTCGCTGCACCGCCTTACTACGACCGTAG
AGCCTTCAGGAATAGCCACCACTTACGCGCTAGTTCAGGCGTGGCGCCCA
CCGCGTACCACACCACCACACACACAGACTGAGCCATCGCCTGCCCAATA
CAACCTTCGAGCCACCACACCACACACACACACAGCCGCTGAGCCATCGC
CAACACAAAACCTCGAGCCGTTACTTTTGGGGGAACGGGGGAAAGAAACA
ACGGGGGAAAAAGGGGGAGGCGAGGCACAAAAAGGAATATTCAATTTCTT
TAGTTTGTTCACTTGAGAATTTCTGTAGTAGCACGCGGCAGGCCTTTGTC
GCAACTCATGCAGAGGTGCGCTGCAGAAATGGCCACCGCGCAGTGGCAGG
AGCATGGGGTGGCGGTGTGGCGACGCCGCTGCGCAGAGGAGCGGCGGCGG
CGCGGCACGAGACGCGCGGCGCCGCGCACTCCAGCGCTCCGCTCTACTGC
GTGGCGCGCTGCCAAGCAGGTAGAGGAAGAGGCTGAAACTGCGACGCTGG
CGGTGCAACTTGCATTGGAGGCGGCCATGTCGTGGACGAAAAGGTGAGCG
TTGCGCCGCGGTTGCGGACGGTGCAAACCAGCGGCTGTTGCACGAGGTTG
CGGATGTGAAGCTTGAACAGCGCGCATGCTTCGTACTTCTAATTCGTGTG
TTTGGTGGTGGTGTTGAGTTTGCTGTGCGCATGTGCCGCAAGTACAGACA
CAAAAGGCAGCCGCAATTTGACCCATTTTGTGTTTTGTTTCCAGAAGGCA
GGTCCTAAATTTCTGCCATAGCAGCAATTTCTTTTAAGAAAGGCTGTTTG
AGTGACGGACCATACGTTTAGTTCTGCCGCGAAGTACCCAATGCGCAGTC
TCTTGCAACCCTCGCTGCATGCCTTCAGGTGGATGAGCTGCGCACACCGC
ACGCGCACCACAACCGGCGGCGTTGCGGCACGTTGCAGCGCTCGACTGCC
GCGCGCATGCAGCAGCGTTCGCCGACATCGGTATGGCGCGTGCCCTCTAC
GACCCCGCACTGAGACCGTCCAATTTACTGGAGCGCTCACTGGAGCGCCG
CGACAAGCTGGATGCACAGTGCTCAGCAGCGTCAGCAGCGCACGATACGC
TCGCTCCGCTGCGGGAAAGGCCTCGGCGGCGGCGGCGGCAGCGGCGGCGG
CGGGCTCGGCGGCGGCAGCGGCGGCGGCGGGCTCGGCGGCGGCAGCGGCG
GCAGCAGCGACGTGGAGAGGCGATGGGTACGGCAGATGTGA
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Coding sequence (CDS) from alignment at Contig_77:671102..676792-

>mRNA_12501 ID=mRNA_12501|Name=jgi.p|Trimin1|351004|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=573bp|location=Sequence derived from alignment at Contig_77:671102..676792- (Tribonema minus UTEX_B_3156 )
ATGGCTCATCGCGAGCGGCAAATCTACGTGTTTACCGAGATCCTGTCGCC
GCTGCGCAAGAAGGGGAGTGATGCACCCGCCGGCATCATCTACGTGTTCC
CTGCCATCATGTTCCTGTCGCCGCTGCGCAAGAAGGCGAGGGACGGCGTC
GTGAAGCTGGCGGGCAAGCGGCGCTTTAAGGCTATCGTGAGGGACGGAGT
TGTGAAGCTGGCGGGCAAGCGCCGCTTCGAGGCCATTGGCAACTACGGTG
TTGTCGGTATCGGCATCATCATGGGTCTGCTGGGCGCCATCATCAGCGTC
CTGGAGTCGTTCTTCCCCCACATCCTAGGAGCGGCGGCGGCGCGGCACGA
GACGCGCGGCGCCGCGCACTCCAGCGCTCCGCTCTACTGCGTGGCGCGCT
GCCAAGCAGCGCTCGACTGCCGCGCGCATGCAGCAGCGTTCGCCGACATC
GGCCTCGGCGGCGGCGGCGGCAGCGGCGGCGGCGGGCTCGGCGGCGGCAG
CGGCGGCGGCGGGCTCGGCGGCGGCAGCGGCGGCAGCAGCGACGTGGAGA
GGCGATGGGTACGGCAGATGTGA
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