mRNA_15058 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A835ZHU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHU1_9STRA) HSP 1 Score: 223 bits (568), Expect = 7.070e-73 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1 Query: 34 MRRGFGAVSMALSLCLACLLAAATDAARTSNTSMVNCSPCMQKVLRIRGGVKKPGQGKASSKGKKGTKAAKKVKITPVSYVKAFFASMLDPSYDEQFIEKPVHSASGAASLKKGKKQA 387 MRRGFGAVSMALSLCLACLLAAATDAARTSNTSMVNCSPCMQKVLRIRGGVKKPGQGKASSKGKKGTKAAKKVKITPVSYVKAFFASMLDPSYDEQFIEKPVHSASGAASLKKGKKQA Sbjct: 1 MRRGFGAVSMALSLCLACLLAAATDAARTSNTSMVNCSPCMQKVLRIRGGVKKPGQGKASSKGKKGTKAAKKVKITPVSYVKAFFASMLDPSYDEQFIEKPVHSASGAASLKKGKKQA 118
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A835ZHM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHM7_9STRA) HSP 1 Score: 610 bits (1574), Expect = 1.860e-218 Identity = 375/375 (100.00%), Postives = 375/375 (100.00%), Query Frame = 1 Query: 1 MSRPGPAVWYHPDIDYSPPDXXXXXXXXXXXXXXXXXXXXXXXGAGRASTPVRVSGSRAVTPQRAVYAAPIAAAQEGRPSQHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADRLRRAQLSDGHIRAAALTGGSNIESAARFGXXXXXXXXXSRILVKA 1125 MSRPGPAVWYHPDIDYSPPDXXXXXXXXXXXXXXXXXXXXXXXGAGRASTPVRVSGSRAVTPQRAVYAAPIAAAQEGRPSQHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADRLRRAQLSDGHIRAAALTGGSNIESAARFGXXXXXXXXXSRILVKA Sbjct: 1 MSRPGPAVWYHPDIDYSPPDXXXXXXXXXXXXXXXXXXXXXXXGAGRASTPVRVSGSRAVTPQRAVYAAPIAAAQEGRPSQHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADRLRRAQLSDGHIRAAALTGGSNIESAARFGXXXXXXXXXSRILVKA 375
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: D7FP96_ECTSI (R3H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP96_ECTSI) HSP 1 Score: 125 bits (315), Expect = 1.090e-28 Identity = 99/265 (37.36%), Postives = 135/265 (50.94%), Query Frame = 1 Query: 130 GAGRASTPVRVS---GSRAVTPQRAVY--AAPI----AAAQEGRPS-QHRGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAP---ALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQ------------AGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGG 849 GAGRA TP R++ + P ++ AAP+ A +EG Q GRR+QRRW NDN G+ K + G G A+ HL++ +WRSSLGDLV+D A +R + R G P P + GSG + + G WEDAEERF + +RLRD+V ++L L ++ +E L F + + P L AL +P +++ A G L V L SPFHRLLLHA CQY L SKS+ + G Sbjct: 98 GAGRAHTPQRLNRXXXXXXLRPSSILHTAAAPVQQSSATRREGESRRQPAGRRKQRRWENDNLLGVEKFLRGRHAH-EEGEAE-------HLTVKHTWRSSLGDLVSDPRAAEVRESFRNGMQPTPQKGGSAPGSGARHFTGGKWEDAEERFLLVERRLRDIVVRALRNPALVGFLEGLETLLGEFTQTKQILTEMPSALRSALASPPKVEVRKXXXXXXXXXAEAGAGPTLLVPLGPSPFHRLLLHALCQYQKLRSKSEETKRG 354
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A8K1FEI2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FEI2_PYTOL) HSP 1 Score: 99.0 bits (245), Expect = 1.610e-19 Identity = 78/267 (29.21%), Postives = 132/267 (49.44%), Query Frame = 1 Query: 250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTH-WEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP--DPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQGGVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEA-------DRLRRAQLSDGH 1020 G R+Q+RW ND+ FG +KA S + LM+H++L+V WRS+ L E + L+ A R+G + +GS ++R W DAEE F RI +R R ++ +S + ++ AVE +L+F+ R LP D L+ L P++L + RL + L DS FHRL++H+ CQ++G+ S+++A + + V + +S+C F+ TR+ + + D + ++ SDG+ Sbjct: 111 GVRKQQRWFNDHHFG-NKAAS-----------TRLEDLMEHMTLNVEWRSNFQKLAEPE-NKDLQVAFRKGRVQ---VQNGSNQPKWRRKDDWNDAEEMFTRIDRRARTLLMRSFNSFV--DFIEAVEHVVLHFVQWRELPSEIEITDGLSRVLAHPIELATVNENDVRLCIPLSDSAFHRLIVHSVCQFYGVRSRTEANRRFNTKIMVLKS-------PKKKFSQEQLEKISLCEFIRETRLGRHSSAVEDPLEDLTKSSECSDGY 352
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A024GEX0_9STRA (R3H domain-containing protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GEX0_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 9.160e-15 Identity = 73/267 (27.34%), Postives = 126/267 (47.19%), Query Frame = 1 Query: 250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP--DPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQG-GVKTVYVSLAGGXXXXXXXXXXXXXXXXXVSMCAFVEATRVAQSEADR-------LRRAQLSDGH 1020 G+R Q+RWAND + + + + LMQHL + V+WRS+ L D L+ A + +S + + + +W +AE F R+ +R R ++++S+ + +++ A+E T+L+F+ R P L + L +PL++ L ++L +SPFHRLL+HA CQ++GL SK++ Q KT+ V +S+C F+ TRV E ++ R ++ SDG+ Sbjct: 67 GKRNQKRWANDYHIENSEMLG-----------NNVEELMQHLHIQVNWRSNFQQLAKDRA---LQDAFLEAKVHPKPIS--TNCRNKKTGYWNEAEYMFRRMDRRARALLSKSI--ISFGSFLEAMEHTILHFVKWREAPSDLELMPALRKMLISPLEITESAFSVRSLRLSLPNSPFHRLLVHALCQFYGLQSKTEQNQEKSFKTIVV-------LQPQTEKMEKLNCTAISLCRFLLETRVPHHENNKEDSMEVSTRTSECSDGY 308
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: W4H8G5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H8G5_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 1.130e-14 Identity = 70/216 (32.41%), Postives = 107/216 (49.54%), Query Frame = 1 Query: 250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRG---THWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFIT-ARALP-----PTTPDPLAEALR----TPLQLQAGPKGGAR---------LGVALHDSPFHRLLLHAACQYHGLLSKS 831 G+R Q R+ ND+ FG A + + LM+H+S+ V W+S+ +L E + L A R P A S+ S + +R W +A++ F R+ KR R ++ S +++ YV AVE +++F+ + LP PT + LA + TP+ + GG L V L +SPFHRLL+HA CQ++GLLSKS Sbjct: 100 GKRSQNRYFNDHHFGNRAATA------------TLDELMEHMSVSVEWKSNFEELARPE-NQELAEAFRSVKEPTHARSNASQNGTHRAKPSVDWTEADDMFTRVDKRARSILLASF--VSMQEYVHAVEQVVVHFVQWNQVLPSEDFSPTLVNWLAAPITIDVVTPMVRDSKAAGGRAKPAKHDETVLVVPLLESPFHRLLIHATCQFYGLLSKS 300
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: W4H7Z2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H7Z2_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 1.910e-13 Identity = 67/210 (31.90%), Postives = 103/210 (49.05%), Query Frame = 1 Query: 268 RWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRG---THWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFIT-ARALP-----PTTPDPLAEALR----TPLQLQAGPKGGAR---------LGVALHDSPFHRLLLHAACQYHGLLSKS 831 R+ ND+ FG A + + LM+H+S+ V W+S+ +L E + L A R P A S+ S + +R W +A++ F R+ KR R ++ S +++ YV AVE +++F+ + LP PT + LA + TP+ + GG L V L +SPFHRLL+HA CQ++GLLSKS Sbjct: 5 RYFNDHHFGNRAATA------------TLDELMEHMSVSVEWKSNFEELARPE-NQELAEAFRSVKEPTHARSNASQNGTHRAKPSVDWTEADDMFTRVDKRARSILLASF--VSMQEYVHAVEQVVVHFVQWNQVLPSEDFSPTLVNWLAAPITIDVVTPMVRDSKAAGGRAKPAKHDETVLVVPLLESPFHRLLIHATCQFYGLLSKS 199
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A6G0W807_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W807_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 2.100e-13 Identity = 62/214 (28.97%), Postives = 99/214 (46.26%), Query Frame = 1 Query: 250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTH---WEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTPDPLAEALRTPLQLQA-------GPKGGARLGVALH----------DSPFHRLLLHAACQYHGLLSKS 831 G+R Q R+ ND+ FG A + + LM+H+S+ V W+S+ +++A + L A R P A S+ + +RG W +AE F R+ KR R ++ + +++ YV AVE +++F+ P L L P+ ++ R+ + H DSPFHRLL+HA CQ++GL SKS Sbjct: 99 GKRSQNRYFNDHHFGNRAATA------------TLEELMEHMSVSVEWKSNF-EILARPENQELAEAFRNVKEPTHARSNSKQNGTHRGKRNDDWTEAENMFTRVDKRARSILLATF--TSMQEYVEAVELVVVHFVQWNEAPSDISPMLLNWLAAPMTVETLTPMVREAKAASTRMKPSKHKETVLVLPLADSPFHRLLIHATCQFYGLHSKS 297
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A067D2K7_SAPPC (R3H domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D2K7_SAPPC) HSP 1 Score: 81.3 bits (199), Expect = 2.610e-13 Identity = 67/216 (31.02%), Postives = 107/216 (49.54%), Query Frame = 1 Query: 250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTH---WEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP-DP-LAEALRTPLQ-LQAGP------KGGARLGVALH----------DSPFHRLLLHAACQYHGLLSKS 831 GRR Q R+ ND+ FG A + ++ LM+H+++ V W+S+ L E +A + A R P+ A S+ + +Q +R W +A++ F RI +R R V+ S + Y+ A+E +++F+ + T DP LA L P++ L+ P GG+R A H +S +HRLL+HA CQ++GL SKS Sbjct: 97 GRRTQNRYFNDHHFGNRAATA------------SLDELMEHMAISVDWKSNFQKLAQPENEA-IADAFRSVKEPSHARSNSNQNQTHRARRHDAWHEADDMFTRIDRRARSVLAASFDA--MHIYIQAIEDVIVHFVKWNEVMSTIELDPVLANMLSGPMRVLETTPVVRETKAGGSRTRPAKHKDSVLVLPLVESSYHRLLIHAVCQFYGLDSKS 297
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: F0WIQ4_9STRA (Uncharacterized protein AlNc14C113G6447 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WIQ4_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 6.890e-13 Identity = 61/202 (30.20%), Postives = 102/202 (50.50%), Query Frame = 1 Query: 247 RGRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRGTHWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFITARALPPTTP--DPLAEALRTPLQLQAGPKGGARLGVALHDSPFHRLLLHAACQYHGLLSKSDAEQG 846 +G+R Q RW NDN G + + + M +MQHL L V+WRS+ +L D L+ A + LS S +++ +W +AE F+R+ +R R ++++SL + + ++ A E L+FI + P L + L +PL+ L + L +S FHRL++HA CQ++GL SK++ +G Sbjct: 70 KGKRDQIRWMNDNHVGNPETMG-----------NNMEEMMQHLHLQVNWRSNFQELAKDHT---LQNAFLEAKVHPRPLSTKSRNKKI--GYWREAEYMFSRMDRRARALLSKSL--LSFKPFLEATEHATLHFIKWQEAPSDLELMPALCKMLVSPLETTESALSVKCLRIPLVNSSFHRLMVHALCQFYGLHSKTEQIEG 253
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Match: A0A024UVM4_9STRA (R3H-assoc domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UVM4_9STRA) HSP 1 Score: 79.0 bits (193), Expect = 1.490e-12 Identity = 64/216 (29.63%), Postives = 104/216 (48.15%), Query Frame = 1 Query: 250 GRRRQRRWANDNFFGIHKAISGGGGDGSSGGADAMSSLMQHLSLDVSWRSSLGDLVADEVDAPLRTAARQGAAPAPALSHGSGHQQYRG---THWEDAEERFARIPKRLRDVVTQSLHGATLRAYVAAVEATLLYFI------TARALPPTTPDPLAEALR----TPLQLQAGPKGGAR---------LGVALHDSPFHRLLLHAACQYHGLLSKS 831 G+R Q R+ ND+ FG A + + LM+H+++ V W+S+ +L E + L A R P A ++ + +R T W +A++ F R+ KR R ++ S +++ ++ AVE+ +++F+ +A L P LA + TP+ A G L V L +SPFHRLL+HA CQ++GL SKS Sbjct: 98 GKRSQNRYFNDHHFGNRAATA------------TLEELMEHMNVSVDWKSNFEELARPE-NQELAEAFRNVKEPTHARTNAKQNGTHRAKPATDWTEADDMFTRVDKRARSILLSSF--VSMQEFIEAVESFVVHFVQWNEVQSANVLSPRLTSWLAAPMTIDIVTPMVRDAKAAGTRSKPAKHSETVLVVPLLESPFHRLLIHATCQFYGLNSKS 298 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|352283 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15058 ID=mRNA_15058|Name=jgi.p|Trimin1|352283|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=483bp|location=Sequence derived from alignment at Contig_114:155957..157442+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGGGGAGGAAAAGCCTAAACAGCGCGTGCAGTCATGCGGCGAGGCTTCGGback to top protein sequence of jgi.p|Trimin1|352283 >Trimin1|352283|estExt_Genemark1.C_Ctg_1140023 ID=Trimin1|352283|estExt_Genemark1.C_Ctg_1140023|Name=jgi.p|Trimin1|352283|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp MRRGFGAVSMALSLCLACLLAAATDAARTSNTSMVNCSPCMQKVLRIRGGback to top mRNA from alignment at Contig_114:155957..157442+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15058 ID=mRNA_15058|Name=jgi.p|Trimin1|352283|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1486bp|location=Sequence derived from alignment at Contig_114:155957..157442+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_114:155957..157442+ >mRNA_15058 ID=mRNA_15058|Name=jgi.p|Trimin1|352283|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_114:155957..157442+ (Tribonema minus UTEX_B_3156 )back to top |