mRNA_12457 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170990
Unique NamemRNA_12457
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Match: A0A836C954_9STRA (SecY/SEC61-alpha family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C954_9STRA)

HSP 1 Score: 211 bits (538), Expect = 3.160e-69
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1 
Query:    1 LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEEENTL 336
            LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEEENTL
Sbjct:    1 LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEEENTL 112
[Close]
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Match: SECY_VAULI (Protein translocase subunit SecY n=1 Tax=Vaucheria litorea TaxID=109269 RepID=SECY_VAULI)

HSP 1 Score: 176 bits (447), Expect = 1.940e-51
Identity = 91/110 (82.73%), Postives = 104/110 (94.55%), Query Frame = 1 
Query:    1 LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEEEN 330
            LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPG+ T+SYL + L+ IA+INAIFLI NI+GLQ+LESIL+LN+ ++RGLGFTSQLILVNVLIDT+KRI+SFLNEEEN
Sbjct:  325 LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGSSTRSYLSKILRFIAKINAIFLIYNIIGLQILESILNLNIINIRGLGFTSQLILVNVLIDTIKRIRSFLNEEEN 434
[Close]
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Match: A0A8F0F797_9PHAE (Preprotein translocase subunit secY n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F797_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 4.380e-32
Identity = 67/109 (61.47%), Postives = 85/109 (77.98%), Query Frame = 1 
Query:    1 LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEEE 327
            L+FFFT FYS I+LDPKD+AE+FRKNSV I GI+PG  T+ YL QTLK++A +N+ FL+  I+ L  +E +L +N  +LRG G TSQLILVNVLIDT K+I+S LN EE
Sbjct:  321 LVFFFTSFYSNILLDPKDIAEQFRKNSVSIRGINPGISTQKYLNQTLKKLAFLNSAFLLIVILLLNAVEYLLPVNNLNLRGFGLTSQLILVNVLIDTFKKIQSLLNAEE 429
[Close]
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Match: A0A7S6U9Y3_9STRA (Protein translocase subunit SecY n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6U9Y3_9STRA)

HSP 1 Score: 125 bits (314), Expect = 6.610e-32
Identity = 65/112 (58.04%), Postives = 86/112 (76.79%), Query Frame = 1 
Query:    1 LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEEENTL 336
            L+FFFT FYS IVLDPKD+A+ FRKNSV I GI  G  T+ YL +TLK + +INAIFLI  ++ L  L+ +L + V+ L+G GFTSQLILVN++IDT+++I S+L+ EEN L
Sbjct:  321 LVFFFTSFYSKIVLDPKDIAKNFRKNSVTIQGIPAGLETEKYLSRTLKHLTQINAIFLISTLLLLNGLDYLLPIKVSQLKGFGFTSQLILVNIIIDTIRKIFSYLSAEENLL 432
[Close]
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Match: D1GJR5_FUCVE (Protein translocase subunit SecY n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJR5_FUCVE)

HSP 1 Score: 124 bits (310), Expect = 2.310e-31
Identity = 64/107 (59.81%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:    4 IFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEE 324
            +FFFT FYSTI+LDPKD+ E+FRKNSV I GI+PG  T++YL  T+KR+  INAIFLI  ++ L  LE +L LN  +LRG G TSQLILVNVL+DT +++++ LN E
Sbjct:  322 VFFFTSFYSTILLDPKDITEQFRKNSVTIKGITPGITTQNYLSTTIKRLTMINAIFLIIVLILLNGLEYLLPLNKLNLRGFGLTSQLILVNVLVDTFRKVQNLLNTE 428
[Close]
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Match: D1J735_ECTSI (Protein translocase subunit SecY n=7 Tax=Ectocarpales TaxID=2877 RepID=D1J735_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 3.270e-31
Identity = 62/108 (57.41%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:    1 LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEE 324
            L+FFFT FYSTI+LDPKD+ E+FRKNSV I GI+PG PTK+YL  T+KR+  +NA+FL+  ++ L  LE +L +   +LRG G TSQLILVNVL+DT +++++ LN E
Sbjct:  322 LVFFFTSFYSTILLDPKDMTEQFRKNSVTIKGINPGKPTKNYLSITIKRLTILNAVFLVVVLILLNGLEYLLPVGDLNLRGFGLTSQLILVNVLVDTFRKVQNLLNAE 429
[Close]
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Match: A0A8F0JZP1_9PHAE (Preprotein translocase subunit secY n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZP1_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 8.750e-31
Identity = 63/109 (57.80%), Postives = 85/109 (77.98%), Query Frame = 1 
Query:    1 LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEEE 327
            L++FFT FYS I+LDPKD++E+FRKNSV I  I+PG PT++YL +T+KR+  INA FLI  ++ L  LE +L +N  +LRG G TSQLILVNVL+DT ++++S LN EE
Sbjct:  321 LVYFFTSFYSKILLDPKDISEQFRKNSVTIKEINPGMPTRNYLSKTIKRLTLINAGFLIVVLILLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQSLLNAEE 429
[Close]
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Match: A0A0R6LUW4_UNDPI (Protein translocase subunit SecY n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUW4_UNDPI)

HSP 1 Score: 120 bits (302), Expect = 3.300e-30
Identity = 62/108 (57.41%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    1 LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEE 324
            L+FFFT FYSTI+LDPKD+ E+FRKNSV I GI+PG  T+ YL  T+KR+  +NA+FLI  ++ L  LE +L +N  +LRG G TSQLILVNVL+DT +++++ LN E
Sbjct:  321 LVFFFTSFYSTILLDPKDMTEQFRKNSVTIKGITPGKSTQKYLSITIKRLTILNAVFLIGVLILLNGLEYLLPVNNLNLRGFGLTSQLILVNVLVDTFRKVRNLLNAE 428
[Close]
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Match: A0A8E5XRJ3_9PHAE (Protein translocase subunit SecY n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ3_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.430e-30
Identity = 61/109 (55.96%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEEE 327
            L+FFFT FYS ++LDPKD+AE+FRK+SV I G++PG  T++YL  T++R+  +NAIFL+  I+ L  LES+L +N  +LRG GFTSQLILVNV+IDT +++++ LN E+
Sbjct:  319 LVFFFTSFYSKVILDPKDIAEQFRKSSVAIKGVAPGISTQNYLSLTIRRLTLLNAIFLVTIIILLNGLESLLPVN--NLRGFGFTSQLILVNVIIDTFRQVQNLLNAED 425
[Close]
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Match: A0A141BSM4_9PHAE (Protein translocase subunit SecY n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSM4_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.550e-30
Identity = 62/108 (57.41%), Postives = 83/108 (76.85%), Query Frame = 1 
Query:    4 IFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRIARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKRIKSFLNEEE 327
            +FFFT FYS ++LDPKD+ E+FRKNSV I GI+PG  T+SYL  T+KR+  INAIFLI  ++ L  LE +L +N  +LRG G TSQLILVNVL+DT +++++ LN E+
Sbjct:  321 VFFFTSFYSAVLLDPKDITEQFRKNSVTIKGITPGINTQSYLSLTIKRLTIINAIFLIIILLLLNGLEYLLPINNLNLRGFGLTSQLILVNVLVDTFRKVQNLLNRED 428
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170990 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C954_9STRA3.160e-69100.00SecY/SEC61-alpha family n=1 Tax=Tribonema minus Ta... [more]
SECY_VAULI1.940e-5182.73Protein translocase subunit SecY n=1 Tax=Vaucheria... [more]
A0A8F0F797_9PHAE4.380e-3261.47Preprotein translocase subunit secY n=1 Tax=Protoh... [more]
A0A7S6U9Y3_9STRA6.610e-3258.04Protein translocase subunit SecY n=1 Tax=Schizocla... [more]
D1GJR5_FUCVE2.310e-3159.81Protein translocase subunit SecY n=3 Tax=Fucaceae ... [more]
D1J735_ECTSI3.270e-3157.41Protein translocase subunit SecY n=7 Tax=Ectocarpa... [more]
A0A8F0JZP1_9PHAE8.750e-3157.80Preprotein translocase subunit secY n=1 Tax=Desmar... [more]
A0A0R6LUW4_UNDPI3.300e-3057.41Protein translocase subunit SecY n=28 Tax=Laminari... [more]
A0A8E5XRJ3_9PHAE4.430e-3055.96Protein translocase subunit SecY n=1 Tax=Ishige ok... [more]
A0A141BSM4_9PHAE4.550e-3057.41Protein translocase subunit SecY n=14 Tax=Sargassa... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:199816..200154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170990|e_gw1.77.70.1
KEGG TC3.A.5.4,3.A.5.8,3.A.5.9
BRITEko00000,ko00001,ko00002,ko02044
KEGG ModuleM00401
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG koko:K10956
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006996,GO:0008150,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009657,GO:0009668,GO:0009987,GO:0010027,GO:0016020,GO:0016043,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061024,GO:0071840
Preferred namesecY
Descriptionprotein transport
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0201@1|root,2QSNV@2759|Eukaryota
Evalue5.36e-32
Seed ortholog2880.D1J735
Hectar predicted targeting categoryother localisation
TranscriptId171312
TrackFilteredModels1
ProteinId170990
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170990gene_12457Tribonema minus UTEX_B_3156 geneContig_77 199816..200154 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12457_1exon_12457_1Tribonema minus UTEX_B_3156 exonContig_77 199816..200154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12457CDS_12457Tribonema minus UTEX_B_3156 CDSContig_77 199816..200154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170990Trimin1|170990|e_gw1.77.70.1Tribonema minus UTEX_B_3156 polypeptideContig_77 199816..200154 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12457 ID=mRNA_12457|Name=jgi.p|Trimin1|170990|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_77:199816..200154+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTAATTTTCTTTTTTACGTATTTTTATTCTACTATTGTTTTAGATCCAAA
AGACGTTGCAGAGCGATTTCGTAAGAATTCAGTTGTAATTTTAGGTATAT
CACCAGGAAATCCTACCAAAAGTTATCTACGTCAAACATTAAAACGTATT
GCAAGGATTAATGCTATTTTTTTAATTTGTAATATTGTCGGCCTACAAGT
TCTTGAATCTATCTTACATCTTAATGTTACGAGTTTACGTGGTTTAGGAT
TTACTTCTCAACTTATTTTAGTAAATGTTTTAATTGACACTGTAAAAAGA
ATTAAAAGCTTCTTAAACGAAGAAGAAAATACTCTTTAA
back to top

protein sequence of jgi.p|Trimin1|170990

>Trimin1|170990|e_gw1.77.70.1 ID=Trimin1|170990|e_gw1.77.70.1|Name=jgi.p|Trimin1|170990|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=113bp
LIFFFTYFYSTIVLDPKDVAERFRKNSVVILGISPGNPTKSYLRQTLKRI
ARINAIFLICNIVGLQVLESILHLNVTSLRGLGFTSQLILVNVLIDTVKR
IKSFLNEEENTL*
back to top

mRNA from alignment at Contig_77:199816..200154+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12457 ID=mRNA_12457|Name=jgi.p|Trimin1|170990|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=339bp|location=Sequence derived from alignment at Contig_77:199816..200154+ (Tribonema minus UTEX_B_3156 )
TTAATTTTCTTTTTTACGTATTTTTATTCTACTATTGTTTTAGATCCAAA
AGACGTTGCAGAGCGATTTCGTAAGAATTCAGTTGTAATTTTAGGTATAT
CACCAGGAAATCCTACCAAAAGTTATCTACGTCAAACATTAAAACGTATT
GCAAGGATTAATGCTATTTTTTTAATTTGTAATATTGTCGGCCTACAAGT
TCTTGAATCTATCTTACATCTTAATGTTACGAGTTTACGTGGTTTAGGAT
TTACTTCTCAACTTATTTTAGTAAATGTTTTAATTGACACTGTAAAAAGA
ATTAAAAGCTTCTTAAACGAAGAAGAAAATACTCTTTAA
back to top

Coding sequence (CDS) from alignment at Contig_77:199816..200154+

>mRNA_12457 ID=mRNA_12457|Name=jgi.p|Trimin1|170990|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=339bp|location=Sequence derived from alignment at Contig_77:199816..200154+ (Tribonema minus UTEX_B_3156 )
TTAATTTTCTTTTTTACGTATTTTTATTCTACTATTGTTTTAGATCCAAA
AGACGTTGCAGAGCGATTTCGTAAGAATTCAGTTGTAATTTTAGGTATAT
CACCAGGAAATCCTACCAAAAGTTATCTACGTCAAACATTAAAACGTATT
GCAAGGATTAATGCTATTTTTTTAATTTGTAATATTGTCGGCCTACAAGT
TCTTGAATCTATCTTACATCTTAATGTTACGAGTTTACGTGGTTTAGGAT
TTACTTCTCAACTTATTTTAGTAAATGTTTTAATTGACACTGTAAAAAGA
ATTAAAAGCTTCTTAAACGAAGAAGAAAATACTCTTTAA
back to top