mRNA_12498 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170956
Unique NamemRNA_12498
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170956 vs. uniprot
Match: A0A835YLC7_9STRA (Bromo domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLC7_9STRA)

HSP 1 Score: 125 bits (315), Expect = 7.140e-37
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 RVRAQVNWHHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCNTVEEVSHR 174
            RVRAQVNWHHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCNTVEEVSHR
Sbjct:    1 RVRAQVNWHHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCNTVEEVSHR 58
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BLAST of jgi.p|Trimin1|170956 vs. uniprot
Match: I2CQH5_NANGC (Bromo domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQH5_NANGC)

HSP 1 Score: 63.2 bits (152), Expect = 6.090e-12
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 1 
Query:    1 RVRAQVNWHHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCNTV 156
            RV  +VN H  AG FR PV E DAPGY K++KEP+DL +I++++ DGS  T+
Sbjct:    2 RVWNKVNLHRVAGTFRHPVSEADAPGYFKVIKEPLDLYSIKRQVEDGSIGTL 53
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BLAST of jgi.p|Trimin1|170956 vs. uniprot
Match: D8LKC4_ECTSI (Bromo domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKC4_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.350e-9
Identity = 28/52 (53.85%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:   13 QVNWHHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCNTVEEVS 168
            +V  H +A IFRK V  KDAPGY +I+KEPMDL  IR+RIM G+  +++++S
Sbjct:  307 RVYRHKFAIIFRKAVNPKDAPGYEEIIKEPMDLSLIRERIMSGALLSLDDMS 358
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BLAST of jgi.p|Trimin1|170956 vs. uniprot
Match: A0A397TZ03_9GLOM (Bromo domain-containing protein (Fragment) n=1 Tax=Gigaspora rosea TaxID=44941 RepID=A0A397TZ03_9GLOM)

HSP 1 Score: 58.5 bits (140), Expect = 1.530e-8
Identity = 22/45 (48.89%), Postives = 34/45 (75.56%), Query Frame = 1 
Query:   13 QVNWHHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSC 147
            ++  H +A +F+ P+ E+DAPGY  IVK+PMDL T+++R+ DG C
Sbjct:  427 EIGNHKFASVFQNPIKEQDAPGYYSIVKQPMDLKTLKKRLRDGVC 471
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BLAST of jgi.p|Trimin1|170956 vs. uniprot
Match: A0A397J629_9GLOM (Bromo domain-containing protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J629_9GLOM)

HSP 1 Score: 58.5 bits (140), Expect = 1.540e-8
Identity = 22/50 (44.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   13 QVNWHHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCNTVEE 162
            +++ H YA +F+ P+ E+DAPGY  IVK+PMDL T+++R+ DG  +  ++
Sbjct:  553 EISNHRYASVFQNPIREQDAPGYYDIVKQPMDLRTLKKRLRDGIVHDTDQ 602
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BLAST of jgi.p|Trimin1|170956 vs. uniprot
Match: A0A397SPP5_9GLOM (Bromo domain-containing protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SPP5_9GLOM)

HSP 1 Score: 57.8 bits (138), Expect = 2.870e-8
Identity = 21/46 (45.65%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:   13 QVNWHHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCN 150
            ++N H +A +F+ P+ E+DAPGY +IVK+PMDL T+++R+ +G+ +
Sbjct:  510 EINNHRFASVFQNPIREQDAPGYYEIVKQPMDLRTLKKRLREGTIH 555
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BLAST of jgi.p|Trimin1|170956 vs. uniprot
Match: A0A2W1B266_HELAM (Bromo domain-containing protein (Fragment) n=1 Tax=Helicoverpa armigera TaxID=29058 RepID=A0A2W1B266_HELAM)

HSP 1 Score: 55.8 bits (133), Expect = 3.540e-8
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   25 HHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCNTVEE 162
            H YA +F +P+ + +APGYS +VK PMDL TIR+ I +G   T E+
Sbjct:    4 HKYASLFLRPISDDEAPGYSMVVKRPMDLSTIRRNIDNGVIRTTEQ 49
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BLAST of jgi.p|Trimin1|170956 vs. uniprot
Match: UPI001ABDF54C (bromodomain-containing protein 8-like n=2 Tax=Bufo TaxID=8383 RepID=UPI001ABDF54C)

HSP 1 Score: 57.0 bits (136), Expect = 5.300e-8
Identity = 24/46 (52.17%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   25 HHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCNTVEE 162
            H YAG FRKP+ +K+APGY +IVK P DL TI++ ++ G+  T  E
Sbjct:  308 HRYAGPFRKPLTDKEAPGYKEIVKRPTDLSTIKRGLIKGNIRTSAE 353
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BLAST of jgi.p|Trimin1|170956 vs. uniprot
Match: A0A0D2VKM9_CAPO3 (Brd8 protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2VKM9_CAPO3)

HSP 1 Score: 57.0 bits (136), Expect = 5.350e-8
Identity = 22/49 (44.90%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:   16 VNWHHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCNTVEE 162
            ++ H YA +F +PV + + PGYS ++K PMDL TIR+RI DG+  +  +
Sbjct:  374 ISNHRYANVFLRPVTDDEVPGYSSVIKRPMDLTTIRKRIDDGTIRSTRD 422
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BLAST of jgi.p|Trimin1|170956 vs. uniprot
Match: A0A1E1WLI2_PECGO (Bromo domain-containing protein (Fragment) n=1 Tax=Pectinophora gossypiella TaxID=13191 RepID=A0A1E1WLI2_PECGO)

HSP 1 Score: 56.6 bits (135), Expect = 7.180e-8
Identity = 24/46 (52.17%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:   25 HHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCNTVEE 162
            H YA IF +P+ +++APGYS +VK PMDL TIR+ I  G+  T  E
Sbjct:  279 HKYASIFLRPITDEEAPGYSMVVKRPMDLTTIRRNIDSGAIRTTAE 324
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170956 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLC7_9STRA7.140e-37100.00Bromo domain-containing protein n=1 Tax=Tribonema ... [more]
I2CQH5_NANGC6.090e-1253.85Bromo domain-containing protein (Fragment) n=1 Tax... [more]
D8LKC4_ECTSI2.350e-953.85Bromo domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A397TZ03_9GLOM1.530e-848.89Bromo domain-containing protein (Fragment) n=1 Tax... [more]
A0A397J629_9GLOM1.540e-844.00Bromo domain-containing protein n=1 Tax=Diversispo... [more]
A0A397SPP5_9GLOM2.870e-845.65Bromo domain-containing protein n=1 Tax=Glomus cer... [more]
A0A2W1B266_HELAM3.540e-850.00Bromo domain-containing protein (Fragment) n=1 Tax... [more]
UPI001ABDF54C5.300e-852.17bromodomain-containing protein 8-like n=2 Tax=Bufo... [more]
A0A0D2VKM9_CAPO35.350e-844.90Brd8 protein n=1 Tax=Capsaspora owczarzaki (strain... [more]
A0A1E1WLI2_PECGO7.180e-852.17Bromo domain-containing protein (Fragment) n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:653022..653198 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170956|e_gw1.77.79.1
BRITEko00000,ko00001,ko00002,ko03032,ko03036
KEGG ModuleM00284
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG koko:K02606,ko:K11348,ko:K11380
Descriptionchromatin organization
COG categoryP
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5141@1|root,KOG0955@2759|Eukaryota
Evalue3.85e-10
Seed ortholog2880.D8LKC4
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId171278
TrackFilteredModels1
ProteinId170956
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170956gene_12498Tribonema minus UTEX_B_3156 geneContig_77 653022..653198 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12498_1exon_12498_1Tribonema minus UTEX_B_3156 exonContig_77 653022..653198 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12498CDS_12498Tribonema minus UTEX_B_3156 CDSContig_77 653022..653198 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170956Trimin1|170956|e_gw1.77.79.1Tribonema minus UTEX_B_3156 polypeptideContig_77 653022..653198 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12498 ID=mRNA_12498|Name=jgi.p|Trimin1|170956|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_77:653022..653198+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCGTCCGCGCGCAGGTGAACTGGCACCACTATGCGGGAATTTTCCGCAA
GCCCGTGCTGGAGAAAGACGCGCCGGGCTACAGCAAGATCGTCAAGGAGC
CCATGGACCTGGGCACGATCCGCCAGCGCATCATGGACGGCTCGTGCAAC
ACCGTGGAGGAAGTGAGTCACCGTTGA
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protein sequence of jgi.p|Trimin1|170956

>Trimin1|170956|e_gw1.77.79.1 ID=Trimin1|170956|e_gw1.77.79.1|Name=jgi.p|Trimin1|170956|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=59bp
RVRAQVNWHHYAGIFRKPVLEKDAPGYSKIVKEPMDLGTIRQRIMDGSCN
TVEEVSHR*
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mRNA from alignment at Contig_77:653022..653198+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12498 ID=mRNA_12498|Name=jgi.p|Trimin1|170956|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=177bp|location=Sequence derived from alignment at Contig_77:653022..653198+ (Tribonema minus UTEX_B_3156 )
CGCGTCCGCGCGCAGGTGAACTGGCACCACTATGCGGGAATTTTCCGCAA
GCCCGTGCTGGAGAAAGACGCGCCGGGCTACAGCAAGATCGTCAAGGAGC
CCATGGACCTGGGCACGATCCGCCAGCGCATCATGGACGGCTCGTGCAAC
ACCGTGGAGGAAGTGAGTCACCGTTGA
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Coding sequence (CDS) from alignment at Contig_77:653022..653198+

>mRNA_12498 ID=mRNA_12498|Name=jgi.p|Trimin1|170956|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=177bp|location=Sequence derived from alignment at Contig_77:653022..653198+ (Tribonema minus UTEX_B_3156 )
CGCGTCCGCGCGCAGGTGAACTGGCACCACTATGCGGGAATTTTCCGCAA
GCCCGTGCTGGAGAAAGACGCGCCGGGCTACAGCAAGATCGTCAAGGAGC
CCATGGACCTGGGCACGATCCGCCAGCGCATCATGGACGGCTCGTGCAAC
ACCGTGGAGGAAGTGAGTCACCGTTGA
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