mRNA_11363 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350966
Unique NamemRNA_11363
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350966 vs. uniprot
Match: A0A835YNK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNK7_9STRA)

HSP 1 Score: 176 bits (445), Expect = 9.350e-55
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 3 
Query:   45 MALRLAALRVGQVSSAALRTPAIAISTRAMNGYISFNEREKGEELVHIRQQEKELLLKLRQNKKIANVELKELLGPHQLPDDVLEKLIEWKFKQ 326
            MALRLAALRVGQVSSAALRTPAIAISTRAMNGYISFNEREKGEELVHIRQQEKELLLKLRQNKKIANVELKELLGPHQLPDDVLEKLIEWKFKQ
Sbjct:    1 MALRLAALRVGQVSSAALRTPAIAISTRAMNGYISFNEREKGEELVHIRQQEKELLLKLRQNKKIANVELKELLGPHQLPDDVLEKLIEWKFKQ 94
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BLAST of jgi.p|Trimin1|350966 vs. uniprot
Match: A0A835ZP46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP46_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.740e-19
Identity = 51/98 (52.04%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:   45 MALRLAALRVGQVSSA-ALRTPAIAISTRA-MNGYISFNEREKGEELVHIRQQEKELLLKLRQNKKIANVELKELLGPH--QLPDDVLEKLIEWKFKQ 326
            MAL     R   V++  ALR PA+A+  R  M+G+ + NEREKGEELVH+R++EK LL+KLR+N + +  ELKE+LGP+  +LP DV+EKL++WK K+
Sbjct:    1 MALTAVRARAATVAALRALRHPAMAVPARGVMDGFGNLNEREKGEELVHMRREEKLLLMKLRENLRTSRTELKEILGPYAAKLPGDVVEKLLDWKAKK 98
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BLAST of jgi.p|Trimin1|350966 vs. uniprot
Match: A0A835YLP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP2_9STRA)

HSP 1 Score: 503 bits (1296), Expect = 2.260e-178
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 1 
Query:    1 MEVTAGQVAGDGGAELHAHGLAAIIAAALVTLCXXXXXXXXXXXXXLRPPPERCASPYGSSAVCFSSPPARRAMPARDATLRHREPFEHDASGGSYDPCEYAASDGGDSYASSPPRSSSRRSAGAAATPGSKGSRNRLSVFFPRHRLSCLAMDMVEGASAHAQQPMPXXXXXXXXPWPGSCGSSGGSRRRSTRKSMRRSIVAPGLGTASPPFGADGSSXXXXXXXXXGEAADPLGRKWTMEAVHHEYPHEVELRFARKSQRNTPGSGXXXXXXXXXXXXXKETRKASHVSDLGTAQVWLSGVSVDGC 921
            MEVTAGQVAGDGGAELHAHGLAAIIAAALVTLCXXXXXXXXXXXXXLRPPPERCASPYGSSAVCFSSPPARRAMPARDATLRHREPFEHDASGGSYDPCEYAASDGGDSYASSPPRSSSRRSAGAAATPGSKGSRNRLSVFFPRHRLSCLAMDMVEGASAHAQQPMPXXXXXXXXPWPGSCGSSGGSRRRSTRKSMRRSIVAPGLGTASPPFGADGSSXXXXXXXXXGEAADPLGRKWTMEAVHHEYPHEVELRFARKSQRNTPGSGXXXXXXXXXXXXXKETRKASHVSDLGTAQVWLSGVSVDGC
Sbjct:    1 MEVTAGQVAGDGGAELHAHGLAAIIAAALVTLCXXXXXXXXXXXXXLRPPPERCASPYGSSAVCFSSPPARRAMPARDATLRHREPFEHDASGGSYDPCEYAASDGGDSYASSPPRSSSRRSAGAAATPGSKGSRNRLSVFFPRHRLSCLAMDMVEGASAHAQQPMPXXXXXXXXPWPGSCGSSGGSRRRSTRKSMRRSIVAPGLGTASPPFGADGSSXXXXXXXXXGEAADPLGRKWTMEAVHHEYPHEVELRFARKSQRNTPGSGXXXXXXXXXXXXXKETRKASHVSDLGTAQVWLSGVSVDGC 307
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350966 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YNK7_9STRA9.350e-55100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZP46_9STRA1.740e-1952.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|350966 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YLP2_9STRA2.260e-178100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_76contigContig_76:382322..384371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350966|estExt_Genemark1.C_Ctg_760048
Hectar predicted targeting categorymitochondrion
TranscriptId351288
TrackFilteredModels1
ProteinId350966
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350966gene_11363Tribonema minus UTEX_B_3156 geneContig_76 382322..384371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350966Trimin1|350966|estExt_Genemark1.C_Ctg_760048Tribonema minus UTEX_B_3156 polypeptideContig_76 382606..384266 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11363_1exon_11363_1Tribonema minus UTEX_B_3156 exonContig_76 382322..382355 +
exon_11363_2exon_11363_2Tribonema minus UTEX_B_3156 exonContig_76 382596..382758 +
exon_11363_3exon_11363_3Tribonema minus UTEX_B_3156 exonContig_76 384135..384371 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11363UTR5_11363Tribonema minus UTEX_B_3156 five_prime_UTRContig_76 382322..382355 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11363CDS_11363Tribonema minus UTEX_B_3156 CDSContig_76 382606..382758 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11363UTR3_11363Tribonema minus UTEX_B_3156 three_prime_UTRContig_76 384267..384371 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11363 ID=mRNA_11363|Name=jgi.p|Trimin1|350966|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=434bp|location=Sequence derived from alignment at Contig_76:382322..384371+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGAAGGAGGCCCACGCACGGTTTCTTACGTACAGGGATAGTACCATGGCG
CTCAGGCTTGCAGCACTGCGTGTTGGGCAGGTGTCCAGCGCAGCTTTGAG
GACCCCCGCTATCGCGATATCGACCCGTGCGATGAACGGCTATATCTCTT
TCAACGAGAGGGAGAAGGGAGAGGAGCTGGTACACATCCGCCAGCAGGAG
AAGGAGCTCCTGCTGAAGCTCAGGCAGAACAAGAAGATCGCAAACGTCGA
GCTCAAGGAGCTGCTGGGGCCACACCAGCTGCCGGACGACGTCCTGGAGA
AGTTGATAGAGTGGAAGTTCAAGCAGTAGGCGACGCTCCCATGTAGCTAG
GGTTAGGGCTAGGGTGAGGGTTACTAACCCTAACCCTAAGGCACGTACAC
CATTTACGAGAGGCGGCGATGGCGGCGGGGGCGG
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protein sequence of jgi.p|Trimin1|350966

>Trimin1|350966|estExt_Genemark1.C_Ctg_760048 ID=Trimin1|350966|estExt_Genemark1.C_Ctg_760048|Name=jgi.p|Trimin1|350966|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=95bp
MALRLAALRVGQVSSAALRTPAIAISTRAMNGYISFNEREKGEELVHIRQ
QEKELLLKLRQNKKIANVELKELLGPHQLPDDVLEKLIEWKFKQ*
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mRNA from alignment at Contig_76:382322..384371+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11363 ID=mRNA_11363|Name=jgi.p|Trimin1|350966|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2050bp|location=Sequence derived from alignment at Contig_76:382322..384371+ (Tribonema minus UTEX_B_3156 )
GGAAGGAGGCCCACGCACGGTTTCTTACGTACAGGTGAGGCTATAATCCT
TTGTTGCTTCATCGCTGCAGCTACAGCCCATCTGGCTATCCCGCTGTGGT
CGCCACATTGTCTGCTCCTTGCACAGTGTCAGATCAAGATCACACCTGGG
TTGATGCATGCTGTGGAAGCGCTCATGCCCGAGCTGTCTCAAGAGCCACA
GCTGCGGTACCGTTTTCCTCCGTCCCTGCCTGTCATCGACAATTTTCTTC
CCACGATGTCTGCCAAGCTCGCAGGGATAGTACCATGGCGCTCAGGCTTG
CAGCACTGCGTGTTGGGCAGGTGTCCAGCGCAGCTTTGAGGACCCCCGCT
ATCGCGATATCGACCCGTGCGATGAACGGCTATATCTCTTTCAACGAGAG
GGAGAAGGGAGAGGAGCTGGTACACATCCGCCAGCAGGTGAGTTGGCCGA
TTTGAGACGACATATGATTCGGTCGCGAGAAGCTGTCAATTAGTCACGAG
ATAAACGTAATGAATGAATGCCCGCATTCAAAAAATGTACAGGCAAGTAA
GTTTCAATCGCTTATCAGACGGACATCTCCTTACTTCCATGGTGCATGCA
GCACCAATTTGGTGGGCGGTAAAGCCCTCCCTTTCTGCACTAGCACTTCC
AATCGCTTTCAGACTTCAGAAGCAGCTTCTTTTCAGTTAAAAATACTGCA
GCGGTGTGGAACGTTGCAGTTTTTCAAAGTGGAGGAGCGGCAGATTGAAC
CTCTGTTGCAGAGTATGTTTGCCTTCAGGGTCACATGGTGCTGCGCGTGC
AAAGCGAGAAGTGAATTTATTTTTTAGGCAAACTTTGGTGATGCGCAGGA
CATGTTCTGCTGACATTGCACGATATGCAACATTTGCGACCTGTTTCAGA
CACCGCCAAAAATTATGGCGCACCTACATGTCAATGTCTATGAAACGTCT
GTATGATTATACTGCATTATTCTATGAGGGGCTGTGGGAATGCCATTTCA
TCACTTGGCAATCGAATGCACTCCCACATCCACATACTTCTGTCGCTAGC
AGTATGCACCCGGTGCACAATGTATCACGCCCCTGCCTACCCGCCTATGA
TTCCTCAACGTAACCGTTGCACACACAAAGGAATCAATATTCCGCAAATC
TACCTAGTCCCGCCCCACACATAGCCCTGCTGTACGCAGCCCACCTCCGT
GCACACTCTATCTGAACATTGAATACTTCAGAAGTTGCAGAAGAGGTCAT
TGCGAAGGGCGCAAAACTGGCTATGATGTGACTCAGCCATGACGTATGGG
GGGCACACGGCGCTAAACACTGATGCTGGCGAGGCAGGGATTGTCGCTAA
GCAAAAGCTCATCTCCCCGTAGATGCAAACTCTCGTTTTTGTTTTCAATC
AGCACCGATTGCTGTTGCCTATGAGCCAGTAGATTTGACGGGCGCAGTCA
GGACCTACCAATGTAGCTCGTCCGTTGTGTTGATGCACTTCCGCATGCGC
ACTTATCTGCACTGCACAGTCTTGACTTAGTATGCAGTGGTTGCAGTACC
GCGTTGCTGAGGTGTGCTCGAAGTGGTCACGGTAGCGTCTGCTAAGGTGG
GACAGGGAGAGCGTATGTTTGTAAGAAGTGATCATTGCCCCACACAGCCG
AGACCTGTGCTGCCAACATAGCTGCCATGTTGTGCTCTTGTTGCGCGCCT
CCGCATATCAAGACGACGCAAGCGCGCACAAACTTGACTCAGCAGTGCGC
CAGGTGCGGCACCACTTGCTGAGCATCCGCTGCGCGCGCCCCCCGCTGCC
CCCGCGCCCGCAGGAGAAGGAGCTCCTGCTGAAGCTCAGGCAGAACAAGA
AGATCGCAAACGTCGAGCTCAAGGAGCTGCTGGGGCCACACCAGCTGCCG
GACGACGTCCTGGAGAAGTTGATAGAGTGGAAGTTCAAGCAGTAGGCGAC
GCTCCCATGTAGCTAGGGTTAGGGCTAGGGTGAGGGTTACTAACCCTAAC
CCTAAGGCACGTACACCATTTACGAGAGGCGGCGATGGCGGCGGGGGCGG
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Coding sequence (CDS) from alignment at Contig_76:382322..384371+

>mRNA_11363 ID=mRNA_11363|Name=jgi.p|Trimin1|350966|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=285bp|location=Sequence derived from alignment at Contig_76:382322..384371+ (Tribonema minus UTEX_B_3156 )
ATGGCGCTCAGGCTTGCAGCACTGCGTGTTGGGCAGGTGTCCAGCGCAGC
TTTGAGGACCCCCGCTATCGCGATATCGACCCGTGCGATGAACGGCTATA
TCTCTTTCAACGAGAGGGAGAAGGGAGAGGAGCTGGTACACATCCGCCAG
CAGGAGAAGGAGCTCCTGCTGAAGCTCAGGCAGAACAAGAAGATCGCAAA
CGTCGAGCTCAAGGAGCTGCTGGGGCCACACCAGCTGCCGGACGACGTCC
TGGAGAAGTTGATAGAGTGGAAGTTCAAGCAGTAG
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