mRNA_7677 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350937
Unique NamemRNA_7677
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350937 vs. uniprot
Match: A0A835YNW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW8_9STRA)

HSP 1 Score: 634 bits (1634), Expect = 7.490e-227
Identity = 385/385 (100.00%), Postives = 385/385 (100.00%), Query Frame = 1 
Query:   61 MIPLIKLVHPDFFAQEGATVSDTNESSLQKLNEVLDICQHKLIYGSETTKASRMRLKLAERYTLVFYQYELEPDAXXXXXXXXXXXXXXXXXXDAPRELSRFTCDLVFPRELVAKATDRVFRAHVEGQLERLLVAGGLSADAGAAAERAADAAAERVRQRAAAGAYVRRSAEELRELRAAQARATQRSLEYICTFTSGRAPATAAAATGATVGGRRRGAPPAPARVRGAFGGGAGALGGGGIFEARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVLTSPMAEVAXXXXXXXXXXAARGYSVREADSGSGHILLAPVNFDAGEMRAFMVDALGARLRAMAASDAVREATSAAKASRLKWE 1215
            MIPLIKLVHPDFFAQEGATVSDTNESSLQKLNEVLDICQHKLIYGSETTKASRMRLKLAERYTLVFYQYELEPDAXXXXXXXXXXXXXXXXXXDAPRELSRFTCDLVFPRELVAKATDRVFRAHVEGQLERLLVAGGLSADAGAAAERAADAAAERVRQRAAAGAYVRRSAEELRELRAAQARATQRSLEYICTFTSGRAPATAAAATGATVGGRRRGAPPAPARVRGAFGGGAGALGGGGIFEARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVLTSPMAEVAXXXXXXXXXXAARGYSVREADSGSGHILLAPVNFDAGEMRAFMVDALGARLRAMAASDAVREATSAAKASRLKWE
Sbjct:    1 MIPLIKLVHPDFFAQEGATVSDTNESSLQKLNEVLDICQHKLIYGSETTKASRMRLKLAERYTLVFYQYELEPDAXXXXXXXXXXXXXXXXXXDAPRELSRFTCDLVFPRELVAKATDRVFRAHVEGQLERLLVAGGLSADAGAAAERAADAAAERVRQRAAAGAYVRRSAEELRELRAAQARATQRSLEYICTFTSGRAPATAAAATGATVGGRRRGAPPAPARVRGAFGGGAGALGGGGIFEARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVLTSPMAEVAXXXXXXXXXXAARGYSVREADSGSGHILLAPVNFDAGEMRAFMVDALGARLRAMAASDAVREATSAAKASRLKWE 385
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BLAST of jgi.p|Trimin1|350937 vs. uniprot
Match: A0A6H5JN32_9PHAE (DUF4460 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN32_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 7.450e-6
Identity = 97/363 (26.72%), Postives = 135/363 (37.19%), Query Frame = 1 
Query:   61 MIPLIKLVHPDFFAQEGATVSDTNESSLQKLNEVLDICQH--------KLIYGSETTKASRMRLKLAERYTLVFYQYELEPDAXXXXXXXXXXXXXXXXXX---------------------DAPRELSRFTCDLVFPRELVAKATDRVFRAHVEGQLERLLVAGGLSADAGAAAERAADAAAERVRQRAAAGAYVRRSAEE-----------------------LRELRAAQARATQRSLEYICTFTSGRAPATAAAATGATVGGRRRGAPPAPARVRGAFGGGAGALGGGGI---------FEARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVL 966
            M+PLIKLVHPD F Q    V+ TN  SL+ LN ++D  +         K   GS + ++      +A  Y+L F+  +  P +                                            L   + +L FP  L +  +  + R  +  QL+ LL    +  D G A     +   E+ R+    G  VR    E                       +R  RA+  R T R      T TS          T    G      P       G FGGG G   G G+          +AR+RR +D LRSGRV F GV ++ +A AL RLH  LV  +E L L D  LW++  +VL
Sbjct:    1 MMPLIKLVHPDMFGQYPPDVASTNSKSLKDLNTLIDAAEALXXXXXXAKPANGSGSVRSPAPPPTVAPFYSLTFFHLKQNPASSDNEDPNTNADKAWRQSGRNDTTXXXXXXXXXXXXXXXXXXXXXLVELSAELRFPPTLSSDPSGSL-RGQLRRQLDGLLRRASVGHDYGKAGGGNEETEDEQARRAMGDGVRVREGETEEAFYGEAFGVGRRRRRGGPPRDGIRTERAS--RTTDRDQGDAPTMTSEELREL----TIEHAGDNHHVDPWDAGAGSGFFGGGLGXXXGRGVRRFGGAEAASQARSRRVDDLLRSGRVQFAGVPVSREAAALLRLHRTLVKHFEHLELHDRGLWSTVVLVL 356
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BLAST of jgi.p|Trimin1|350937 vs. uniprot
Match: D7G1D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D8_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.870e-5
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1 
Query:  790 EARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVL 966
            +AR+RR +D LRSGRV F GV ++ +A AL RLH  LV  +E L L D  LW++  +VL
Sbjct:  234 QARSRRVDDLLRSGRVQFAGVPVSREAAALLRLHQTLVKHFEHLELHDRGLWSTVVLVL 292
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350937 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YNW8_9STRA7.490e-227100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JN32_9PHAE7.450e-626.72DUF4460 domain-containing protein n=1 Tax=Ectocarp... [more]
D7G1D8_ECTSI5.870e-550.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:618414..619643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350937|estExt_Genemark1.C_Ctg_750089
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_001930.1
TranscriptId351259
TrackFilteredModels1
ProteinId350937
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350937gene_7677Tribonema minus UTEX_B_3156 geneContig_75 618414..619643 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7677_1exon_7677_1Tribonema minus UTEX_B_3156 exonContig_75 618414..619643 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7677UTR3_7677Tribonema minus UTEX_B_3156 three_prime_UTRContig_75 618414..618425 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7677CDS_7677Tribonema minus UTEX_B_3156 CDSContig_75 618426..619583 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7677UTR5_7677Tribonema minus UTEX_B_3156 five_prime_UTRContig_75 619584..619643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350937Trimin1|350937|estExt_Genemark1.C_Ctg_750089Tribonema minus UTEX_B_3156 polypeptideContig_75 618426..619583 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7677 ID=mRNA_7677|Name=jgi.p|Trimin1|350937|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1230bp|location=Sequence derived from alignment at Contig_75:618414..619643- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGGCAGCAAGCACAGCAGCTCAAGATGAAAGCACTAAGGTGCCGCACCT
GCGTCGCCGGATGATCCCCCTGATCAAACTGGTTCACCCTGATTTCTTCG
CTCAAGAAGGGGCGACAGTGAGTGACACGAATGAGAGCTCTCTCCAAAAG
CTCAATGAAGTCCTAGACATATGCCAGCACAAGTTGATCTATGGCTCCGA
AACAACGAAAGCCAGCCGCATGCGCCTCAAGCTGGCGGAGCGATACACCC
TCGTCTTCTACCAGTACGAGCTGGAGCCGGACGCAGCAGCAGCAGCGGCG
GCGCTCGAGCCAGACAAGGCACCACCGCCGCCGCCGCCGGACGCGCCCAG
AGAGCTGAGCAGGTTCACCTGCGACCTGGTCTTCCCCAGGGAGCTCGTCG
CCAAAGCCACAGACCGCGTCTTCCGCGCGCACGTGGAGGGCCAGCTGGAG
CGGCTGCTGGTGGCGGGCGGGCTCAGCGCGGACGCCGGCGCCGCCGCGGA
GCGCGCCGCCGACGCCGCCGCAGAGCGCGTGCGGCAGCGCGCCGCCGCGG
GCGCGTACGTACGCCGCAGCGCCGAGGAGCTGCGCGAGCTGCGCGCGGCG
CAGGCGCGGGCGACGCAGCGCTCGCTCGAGTACATCTGCACGTTCACCTC
GGGCCGCGCGCCCGCGACCGCCGCCGCGGCGACGGGGGCCACCGTCGGCG
GGCGCAGGAGGGGGGCGCCGCCGGCGCCGGCGCGCGTCAGGGGGGCGTTT
GGCGGCGGCGCGGGGGCGCTGGGGGGCGGGGGGATCTTCGAGGCGCGCGC
GCGCCGCGCCAACGACTTCCTGCGCAGCGGGCGCGTGCTGTTCCGCGGCG
TCGCACTGGCGGCGCAGGCGCGCGCGCTGCGGCGGCTGCACGCGCTGCTG
GTGGACGCGTACGAGGCGCTGCGGCTCGACGACGACGCGCTGTGGGCGAG
CACTGCCGTGGTGCTGACGTCACCGATGGCGGAAGTGGCGGCGGCGGCGC
AAGCGGGCGGCGGCGGCGGCGCAGCGCGCGGCTACTCCGTGAGAGAGGCC
GACAGCGGCAGCGGCCACATACTGCTGGCGCCGGTGAATTTCGACGCCGG
CGAGATGCGCGCATTCATGGTGGACGCGCTCGGCGCGCGGTTGCGCGCGA
TGGCGGCGAGCGACGCCGTGCGCGAGGCGACGTCTGCCGCCAAAGCGTCG
CGGCTAAAATGGGAATGAGTTTTGTCATGA
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protein sequence of jgi.p|Trimin1|350937

>Trimin1|350937|estExt_Genemark1.C_Ctg_750089 ID=Trimin1|350937|estExt_Genemark1.C_Ctg_750089|Name=jgi.p|Trimin1|350937|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=386bp
MIPLIKLVHPDFFAQEGATVSDTNESSLQKLNEVLDICQHKLIYGSETTK
ASRMRLKLAERYTLVFYQYELEPDAAAAAAALEPDKAPPPPPPDAPRELS
RFTCDLVFPRELVAKATDRVFRAHVEGQLERLLVAGGLSADAGAAAERAA
DAAAERVRQRAAAGAYVRRSAEELRELRAAQARATQRSLEYICTFTSGRA
PATAAAATGATVGGRRRGAPPAPARVRGAFGGGAGALGGGGIFEARARRA
NDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAV
VLTSPMAEVAAAAQAGGGGGAARGYSVREADSGSGHILLAPVNFDAGEMR
AFMVDALGARLRAMAASDAVREATSAAKASRLKWE*
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mRNA from alignment at Contig_75:618414..619643-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7677 ID=mRNA_7677|Name=jgi.p|Trimin1|350937|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1230bp|location=Sequence derived from alignment at Contig_75:618414..619643- (Tribonema minus UTEX_B_3156 )
AGGGCAGCAAGCACAGCAGCTCAAGATGAAAGCACTAAGGTGCCGCACCT
GCGTCGCCGGATGATCCCCCTGATCAAACTGGTTCACCCTGATTTCTTCG
CTCAAGAAGGGGCGACAGTGAGTGACACGAATGAGAGCTCTCTCCAAAAG
CTCAATGAAGTCCTAGACATATGCCAGCACAAGTTGATCTATGGCTCCGA
AACAACGAAAGCCAGCCGCATGCGCCTCAAGCTGGCGGAGCGATACACCC
TCGTCTTCTACCAGTACGAGCTGGAGCCGGACGCAGCAGCAGCAGCGGCG
GCGCTCGAGCCAGACAAGGCACCACCGCCGCCGCCGCCGGACGCGCCCAG
AGAGCTGAGCAGGTTCACCTGCGACCTGGTCTTCCCCAGGGAGCTCGTCG
CCAAAGCCACAGACCGCGTCTTCCGCGCGCACGTGGAGGGCCAGCTGGAG
CGGCTGCTGGTGGCGGGCGGGCTCAGCGCGGACGCCGGCGCCGCCGCGGA
GCGCGCCGCCGACGCCGCCGCAGAGCGCGTGCGGCAGCGCGCCGCCGCGG
GCGCGTACGTACGCCGCAGCGCCGAGGAGCTGCGCGAGCTGCGCGCGGCG
CAGGCGCGGGCGACGCAGCGCTCGCTCGAGTACATCTGCACGTTCACCTC
GGGCCGCGCGCCCGCGACCGCCGCCGCGGCGACGGGGGCCACCGTCGGCG
GGCGCAGGAGGGGGGCGCCGCCGGCGCCGGCGCGCGTCAGGGGGGCGTTT
GGCGGCGGCGCGGGGGCGCTGGGGGGCGGGGGGATCTTCGAGGCGCGCGC
GCGCCGCGCCAACGACTTCCTGCGCAGCGGGCGCGTGCTGTTCCGCGGCG
TCGCACTGGCGGCGCAGGCGCGCGCGCTGCGGCGGCTGCACGCGCTGCTG
GTGGACGCGTACGAGGCGCTGCGGCTCGACGACGACGCGCTGTGGGCGAG
CACTGCCGTGGTGCTGACGTCACCGATGGCGGAAGTGGCGGCGGCGGCGC
AAGCGGGCGGCGGCGGCGGCGCAGCGCGCGGCTACTCCGTGAGAGAGGCC
GACAGCGGCAGCGGCCACATACTGCTGGCGCCGGTGAATTTCGACGCCGG
CGAGATGCGCGCATTCATGGTGGACGCGCTCGGCGCGCGGTTGCGCGCGA
TGGCGGCGAGCGACGCCGTGCGCGAGGCGACGTCTGCCGCCAAAGCGTCG
CGGCTAAAATGGGAATGAGTTTTGTCATGA
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Coding sequence (CDS) from alignment at Contig_75:618414..619643-

>mRNA_7677 ID=mRNA_7677|Name=jgi.p|Trimin1|350937|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1158bp|location=Sequence derived from alignment at Contig_75:618414..619643- (Tribonema minus UTEX_B_3156 )
ATGATCCCCCTGATCAAACTGGTTCACCCTGATTTCTTCGCTCAAGAAGG
GGCGACAGTGAGTGACACGAATGAGAGCTCTCTCCAAAAGCTCAATGAAG
TCCTAGACATATGCCAGCACAAGTTGATCTATGGCTCCGAAACAACGAAA
GCCAGCCGCATGCGCCTCAAGCTGGCGGAGCGATACACCCTCGTCTTCTA
CCAGTACGAGCTGGAGCCGGACGCAGCAGCAGCAGCGGCGGCGCTCGAGC
CAGACAAGGCACCACCGCCGCCGCCGCCGGACGCGCCCAGAGAGCTGAGC
AGGTTCACCTGCGACCTGGTCTTCCCCAGGGAGCTCGTCGCCAAAGCCAC
AGACCGCGTCTTCCGCGCGCACGTGGAGGGCCAGCTGGAGCGGCTGCTGG
TGGCGGGCGGGCTCAGCGCGGACGCCGGCGCCGCCGCGGAGCGCGCCGCC
GACGCCGCCGCAGAGCGCGTGCGGCAGCGCGCCGCCGCGGGCGCGTACGT
ACGCCGCAGCGCCGAGGAGCTGCGCGAGCTGCGCGCGGCGCAGGCGCGGG
CGACGCAGCGCTCGCTCGAGTACATCTGCACGTTCACCTCGGGCCGCGCG
CCCGCGACCGCCGCCGCGGCGACGGGGGCCACCGTCGGCGGGCGCAGGAG
GGGGGCGCCGCCGGCGCCGGCGCGCGTCAGGGGGGCGTTTGGCGGCGGCG
CGGGGGCGCTGGGGGGCGGGGGGATCTTCGAGGCGCGCGCGCGCCGCGCC
AACGACTTCCTGCGCAGCGGGCGCGTGCTGTTCCGCGGCGTCGCACTGGC
GGCGCAGGCGCGCGCGCTGCGGCGGCTGCACGCGCTGCTGGTGGACGCGT
ACGAGGCGCTGCGGCTCGACGACGACGCGCTGTGGGCGAGCACTGCCGTG
GTGCTGACGTCACCGATGGCGGAAGTGGCGGCGGCGGCGCAAGCGGGCGG
CGGCGGCGGCGCAGCGCGCGGCTACTCCGTGAGAGAGGCCGACAGCGGCA
GCGGCCACATACTGCTGGCGCCGGTGAATTTCGACGCCGGCGAGATGCGC
GCATTCATGGTGGACGCGCTCGGCGCGCGGTTGCGCGCGATGGCGGCGAG
CGACGCCGTGCGCGAGGCGACGTCTGCCGCCAAAGCGTCGCGGCTAAAAT
GGGAATGA
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