Trimin1|350937|estExt_Genemark1.C_Ctg_750089 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350937
Unique NameTrimin1|350937|estExt_Genemark1.C_Ctg_750089
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length386
Homology
BLAST of jgi.p|Trimin1|350937 vs. uniprot
Match: A0A835YNW8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNW8_9STRA)

HSP 1 Score: 634 bits (1635), Expect = 2.050e-227
Identity = 385/385 (100.00%), Postives = 385/385 (100.00%), Query Frame = 0
Query:    1 MIPLIKLVHPDFFAQEGATVSDTNESSLQKLNEVLDICQHKLIYGSETTKASRMRLKLAERYTLVFYQYELEPDAXXXXXXXXXXXXXXXXXXDAPRELSRFTCDLVFPRELVAKATDRVFRAHVEGQLERLLVAGGLSADAGAAAERAADAAAERVRQRAAAGAYVRRSAEELRELRAAQARATQRSLEYICTFTSGRAPATAAAATGATVGGRRRGAPPAPARVRGAFGGGAGALGGGGIFEARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVLTSPMAEVAXXXXXXXXXXAARGYSVREADSGSGHILLAPVNFDAGEMRAFMVDALGARLRAMAASDAVREATSAAKASRLKWE 385
            MIPLIKLVHPDFFAQEGATVSDTNESSLQKLNEVLDICQHKLIYGSETTKASRMRLKLAERYTLVFYQYELEPDAXXXXXXXXXXXXXXXXXXDAPRELSRFTCDLVFPRELVAKATDRVFRAHVEGQLERLLVAGGLSADAGAAAERAADAAAERVRQRAAAGAYVRRSAEELRELRAAQARATQRSLEYICTFTSGRAPATAAAATGATVGGRRRGAPPAPARVRGAFGGGAGALGGGGIFEARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVLTSPMAEVAXXXXXXXXXXAARGYSVREADSGSGHILLAPVNFDAGEMRAFMVDALGARLRAMAASDAVREATSAAKASRLKWE
Sbjct:    1 MIPLIKLVHPDFFAQEGATVSDTNESSLQKLNEVLDICQHKLIYGSETTKASRMRLKLAERYTLVFYQYELEPDAXXXXXXXXXXXXXXXXXXDAPRELSRFTCDLVFPRELVAKATDRVFRAHVEGQLERLLVAGGLSADAGAAAERAADAAAERVRQRAAAGAYVRRSAEELRELRAAQARATQRSLEYICTFTSGRAPATAAAATGATVGGRRRGAPPAPARVRGAFGGGAGALGGGGIFEARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVLTSPMAEVAXXXXXXXXXXAARGYSVREADSGSGHILLAPVNFDAGEMRAFMVDALGARLRAMAASDAVREATSAAKASRLKWE 385          
BLAST of jgi.p|Trimin1|350937 vs. uniprot
Match: A0A6H5JN32_9PHAE (DUF4460 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN32_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 6.560e-6
Identity = 97/363 (26.72%), Postives = 135/363 (37.19%), Query Frame = 0
Query:    1 MIPLIKLVHPDFFAQEGATVSDTNESSLQKLNEVLDICQH--------KLIYGSETTKASRMRLKLAERYTLVFYQYELEPDAXXXXXXXXXXXXXXXXXX---------------------DAPRELSRFTCDLVFPRELVAKATDRVFRAHVEGQLERLLVAGGLSADAGAAAERAADAAAERVRQRAAAGAYVRRSAEE-----------------------LRELRAAQARATQRSLEYICTFTSGRAPATAAAATGATVGGRRRGAPPAPARVRGAFGGGAGALGGGGI---------FEARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVL 302
            M+PLIKLVHPD F Q    V+ TN  SL+ LN ++D  +         K   GS + ++      +A  Y+L F+  +  P +                                            L   + +L FP  L +  +  + R  +  QL+ LL    +  D G A     +   E+ R+    G  VR    E                       +R  RA+  R T R      T TS          T    G      P       G FGGG G   G G+          +AR+RR +D LRSGRV F GV ++ +A AL RLH  LV  +E L L D  LW++  +VL
Sbjct:    1 MMPLIKLVHPDMFGQYPPDVASTNSKSLKDLNTLIDAAEALXXXXXXAKPANGSGSVRSPAPPPTVAPFYSLTFFHLKQNPASSDNEDPNTNADKAWRQSGRNDTTXXXXXXXXXXXXXXXXXXXXXLVELSAELRFPPTLSSDPSGSL-RGQLRRQLDGLLRRASVGHDYGKAGGGNEETEDEQARRAMGDGVRVREGETEEAFYGEAFGVGRRRRRGGPPRDGIRTERAS--RTTDRDQGDAPTMTSEELREL----TIEHAGDNHHVDPWDAGAGSGFFGGGLGXXXGRGVRRFGGAEAASQARSRRVDDLLRSGRVQFAGVPVSREAAALLRLHRTLVKHFEHLELHDRGLWSTVVLVL 356          
BLAST of jgi.p|Trimin1|350937 vs. uniprot
Match: D7G1D8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1D8_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 5.240e-5
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 0
Query:  244 EARARRANDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAVVL 302
            +AR+RR +D LRSGRV F GV ++ +A AL RLH  LV  +E L L D  LW++  +VL
Sbjct:  234 QARSRRVDDLLRSGRVQFAGVPVSREAAALLRLHQTLVKHFEHLELHDRGLWSTVVLVL 292          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350937 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YNW8_9STRA2.050e-227100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JN32_9PHAE6.560e-626.72DUF4460 domain-containing protein n=1 Tax=Ectocarp... [more]
D7G1D8_ECTSI5.240e-550.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 167..187
NoneNo IPR availableCOILSCoilCoilcoord: 381..385

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:618426..619583 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350937mRNA_7677Tribonema minus UTEX_B_3156 mRNAContig_75 618414..619643 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350937|estExt_Genemark1.C_Ctg_750089 ID=Trimin1|350937|estExt_Genemark1.C_Ctg_750089|Name=jgi.p|Trimin1|350937|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=386bp
MIPLIKLVHPDFFAQEGATVSDTNESSLQKLNEVLDICQHKLIYGSETTK
ASRMRLKLAERYTLVFYQYELEPDAAAAAAALEPDKAPPPPPPDAPRELS
RFTCDLVFPRELVAKATDRVFRAHVEGQLERLLVAGGLSADAGAAAERAA
DAAAERVRQRAAAGAYVRRSAEELRELRAAQARATQRSLEYICTFTSGRA
PATAAAATGATVGGRRRGAPPAPARVRGAFGGGAGALGGGGIFEARARRA
NDFLRSGRVLFRGVALAAQARALRRLHALLVDAYEALRLDDDALWASTAV
VLTSPMAEVAAAAQAGGGGGAARGYSVREADSGSGHILLAPVNFDAGEMR
AFMVDALGARLRAMAASDAVREATSAAKASRLKWE*
back to top