mRNA_7674 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350935
Unique NamemRNA_7674
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Match: A0A835YKF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKF7_9STRA)

HSP 1 Score: 224 bits (570), Expect = 4.550e-73
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 3 
Query:  171 MAVNVTRHTVVIQPDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQRLNAAG 512
            MAVNVTRHTVVIQPDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQRLNAAG
Sbjct:    1 MAVNVTRHTVVIQPDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQRLNAAG 114
[Close]
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Match: A0A7S3HFQ8_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFQ8_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.390e-10
Identity = 32/84 (38.10%), Postives = 50/84 (59.52%), Query Frame = 3 
Query:  240 GLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLES 491
             + V A  YL  +  C+GT   R A   +K  + +++ Y E F  RD+L+YH+ WA+ RGE  E +NL  QLE + +E+D +E+
Sbjct:   27 AITVFAFFYLSAMKMCFGTYFVRTAMSNYKSNKVIRSRYYELFSSRDNLMYHISWAKSRGELEEARNLMRQLEKVDKEIDQIET 110
[Close]
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Match: W7TKY8_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TKY8_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.470e-8
Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 3 
Query:  267 LLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQRLNAAG 512
            L +L  C+GT +        +ERR L+ +Y  A+QRR+D +YH DWA+ RG  +E K L  ++E    ELD L+    N  G
Sbjct:   31 LFVLRICFGTFSLSRVLAHFEERRHLERAYALAYQRREDSIYHRDWAKSRGAFSEAKRLDAEIEETESELDSLDDTLGNPQG 112
[Close]
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Match: A0A4D9CYA4_9STRA (AAA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYA4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.240e-8
Identity = 33/82 (40.24%), Postives = 48/82 (58.54%), Query Frame = 3 
Query:  267 LLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLESQRLNAAG 512
            LL+L  C+GT +        +ERR L+ +Y  A+QRR+D +YH DWA+ RG  +E K L  ++E    ELD L+ +  N  G
Sbjct:   31 LLILRICFGTFSLSRVLAHFEERRHLERAYALAYQRREDSIYHRDWAKSRGAFSEAKRLDAEIEETESELDSLDEKIGNPQG 112
[Close]
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Match: A0A6H5L5M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5M4_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 9.470e-8
Identity = 32/93 (34.41%), Postives = 56/93 (60.22%), Query Frame = 3 
Query:  210 PDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAARRHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLEELDDLE 488
            PD  +R+++    +L  +Y+ +++ CWGT++        KER+ L+ +Y+   QRR+D+LYH+  A+QRGE  +   L  QL  +  +LD +E
Sbjct:    9 PD--VRVLLYSFLLLLGIYVSVMYTCWGTVSLSKVKAEFKERQDLERAYEATLQRREDMLYHIGGAQQRGEHQQAAVLDKQLLRVDGDLDLIE 99
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350935 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YKF7_9STRA4.550e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3HFQ8_9STRA1.390e-1038.10Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
W7TKY8_9STRA2.470e-839.02Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A4D9CYA4_9STRA5.240e-840.24AAA domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A6H5L5M4_9PHAE9.470e-834.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:607287..608778 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350935|estExt_Genemark1.C_Ctg_750086
Hectar predicted targeting categorysignal anchor
TranscriptId351257
TrackFilteredModels1
ProteinId350935
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350935gene_7674Tribonema minus UTEX_B_3156 geneContig_75 607287..608778 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350935Trimin1|350935|estExt_Genemark1.C_Ctg_750086Tribonema minus UTEX_B_3156 polypeptideContig_75 607287..608608 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7674_2exon_7674_2Tribonema minus UTEX_B_3156 exonContig_75 607287..607313 -
exon_7674_1exon_7674_1Tribonema minus UTEX_B_3156 exonContig_75 608291..608778 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7674CDS_7674Tribonema minus UTEX_B_3156 CDSContig_75 608291..608608 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7674UTR5_7674Tribonema minus UTEX_B_3156 five_prime_UTRContig_75 608609..608778 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7674 ID=mRNA_7674|Name=jgi.p|Trimin1|350935|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=515bp|location=Sequence derived from alignment at Contig_75:607287..608778- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGAGGTGAGCGGTTGATCTGGCTCCTGACTTTGTTGTTGTGGTCGGATA
TACTGGACTGAGCAACCGGCGGAATTTCGTCGTGAAGACATTGCTGCAGC
CGGCTATCTCAGGTGCGCAGGTTTGAGAAAGATCGCGTGGGTCTGGTACC
ACTGTAGAACCCTGGAGGCGATGGCGGTCAACGTGACGCGACACACCGTT
GTGATACAGCCTGACTTCCACCTGCGCATCGTGGTGGCGGGCCTGGGGGT
CCTGGCGGTAGTCTATCTTCTTCTTCTATGGCAGTGCTGGGGGACCCTCA
ACCCTCGAGCAGCAGCCAGGCGGCACAAGGAGCGAAGGGCTCTGCAAGCA
TCTTATGACGAGGCTTTTCAGCGCAGAGACGACCTGCTCTACCACTTGGA
CTGGGCCAGGCAGCGAGGGGAGAAGGCTGAAGTGAAGAACTTGCAGGGGC
AGTTGGAGGGTATGCTAGAGGAGCTGGATGATCTGGAGTCGCAGAGGCTG
AACGCCGCAGGATGA
back to top

protein sequence of jgi.p|Trimin1|350935

>Trimin1|350935|estExt_Genemark1.C_Ctg_750086 ID=Trimin1|350935|estExt_Genemark1.C_Ctg_750086|Name=jgi.p|Trimin1|350935|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=115bp
MAVNVTRHTVVIQPDFHLRIVVAGLGVLAVVYLLLLWQCWGTLNPRAAAR
RHKERRALQASYDEAFQRRDDLLYHLDWARQRGEKAEVKNLQGQLEGMLE
ELDDLESQRLNAAG*
back to top

mRNA from alignment at Contig_75:607287..608778-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7674 ID=mRNA_7674|Name=jgi.p|Trimin1|350935|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1492bp|location=Sequence derived from alignment at Contig_75:607287..608778- (Tribonema minus UTEX_B_3156 )
CAGAGGTGAGCGGTTGATCTGGCTCCTGACTTTGTTGTTGTGGTCGGATA
TACTGGACTGAGCAACCGGCGGAATTTCGTCGTGAAGACATTGCTGCAGC
CGGCTATCTCAGGTGCGCAGGTTTGAGAAAGATCGCGTGGGTCTGGTACC
ACTGTAGAACCCTGGAGGCGATGGCGGTCAACGTGACGCGACACACCGTT
GTGATACAGCCTGACTTCCACCTGCGCATCGTGGTGGCGGGCCTGGGGGT
CCTGGCGGTAGTCTATCTTCTTCTTCTATGGCAGTGCTGGGGGACCCTCA
ACCCTCGAGCAGCAGCCAGGCGGCACAAGGAGCGAAGGGCTCTGCAAGCA
TCTTATGACGAGGCTTTTCAGCGCAGAGACGACCTGCTCTACCACTTGGA
CTGGGCCAGGCAGCGAGGGGAGAAGGCTGAAGTGAAGAACTTGCAGGGGC
AGTTGGAGGGTATGCTAGAGGAGCTGGATGATCTGGAGGTACAGCTAGCA
GCTATGGACAGTAAAGGTGACAATGAGCCGTCAAAACAACAATAATGCAG
CAGCTCATGCCATACTTACGCTGCAAATGGTGCGCGCTTCTTTGTTGCGT
CTACCTCTGCTCCCACTCCTCGGATCCTTGCATGACATGGTACATTGCTC
AGCAACAACATCTAGTGGCATTTTCACACATCAGGGCTGCGCATGCGGTA
ATGCACGCGCTTAGTCATATGACATCACTGGCTCCATGCTTGTCGCTAGA
TTCTCTTACTTCTTGAAGTCATTACGTTCCTTGATGCCCGCCAGCAACCT
GTGCAAAATTGTTGCACTTGTTGTTGCAGCTGCGTACTTCGTACTACTTC
TCGCTTAGTGCGCTCAAAAGCCCAGATGATTGATTTCAAGCTTGCTACCA
AAATTGCATGTATCTTGTGACAATTTCTGTGTCCTGCGCATTGACAATCA
CTTTTAAACGACAGATGGTTTGACACCACATACTTTCTGAAGGACCGTCA
GTGACTTGTCCGGCTTTTGGCGGACGTTCGTGGAGCATGATGTTTGCTAT
GTAGTCTCACAACATACGCGGTCGTATAATGACAGCTTCTCACTCTGTGC
TGGATAAGGGTCTGCGCAATTTGCAAGGAGCTCGCTGCTGCTTCACCAGA
TGGCAGAATGATGCCCTGTTCTGCCAAGGTATACCTCCAAATAATGTAAT
TTTCTGTGTATGCTTCATGTGAAGCCACAGCCATGGGCACCTGCAGAGCA
GCAGTGCTTTGAGAATCAAGCATACGTAAAATCTTCTTTGACTTGCAAGC
CCTGGCACATGCTACATTGCTGCGCCATCAACTTCTGCAGCTGGTGCTGT
GCGGCAGCGAGCAATAGCACGAGAAAGGAGACCTGGTTCTTGAGCTTGTG
GACGTCACTATCATCATGCAGCCTGTGAGAGACCGGTGACTTTTCGTGTG
CTGCCGTTGCCCAAGTCGCAGAGGCTGAACGCCGCAGGATGA
back to top

Coding sequence (CDS) from alignment at Contig_75:607287..608778-

>mRNA_7674 ID=mRNA_7674|Name=jgi.p|Trimin1|350935|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=345bp|location=Sequence derived from alignment at Contig_75:607287..608778- (Tribonema minus UTEX_B_3156 )
ATGGCGGTCAACGTGACGCGACACACCGTTGTGATACAGCCTGACTTCCA
CCTGCGCATCGTGGTGGCGGGCCTGGGGGTCCTGGCGGTAGTCTATCTTC
TTCTTCTATGGCAGTGCTGGGGGACCCTCAACCCTCGAGCAGCAGCCAGG
CGGCACAAGGAGCGAAGGGCTCTGCAAGCATCTTATGACGAGGCTTTTCA
GCGCAGAGACGACCTGCTCTACCACTTGGACTGGGCCAGGCAGCGAGGGG
AGAAGGCTGAAGTGAAGAACTTGCAGGGGCAGTTGGAGGGTATGCTAGAG
GAGCTGGATGATCTGGAGTCGCAGAGGCTGAACGCCGCAGGATGA
back to top