mRNA_7671 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|334234
Unique NamemRNA_7671
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|334234 vs. uniprot
Match: A0A835YKK5_9STRA (Ankyrin repeat-containing domain protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKK5_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.780e-40
Identity = 63/63 (100.00%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 WWQCHLQVGSIAVHRLAGRQPYAVVHAPHSAGHTPLHLACRYGHVSVALALLIKGCDIDACDS 189
            WWQCHLQVGSIAVHRLAGRQPYAVVHAPHSAGHTPLHLACRYGHVSVALALLIKGCDIDACDS
Sbjct:    1 WWQCHLQVGSIAVHRLAGRQPYAVVHAPHSAGHTPLHLACRYGHVSVALALLIKGCDIDACDS 63
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|334234 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YKK5_9STRA2.780e-40100.00Ankyrin repeat-containing domain protein (Fragment... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:597732..598052 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|334234|MIX42997_2_32
Hectar predicted targeting categoryother localisation
TranscriptId334556
TrackFilteredModels1
ProteinId334234
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|334234gene_7671Tribonema minus UTEX_B_3156 geneContig_75 597732..598052 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7671_1exon_7671_1Tribonema minus UTEX_B_3156 exonContig_75 597732..598052 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7671CDS_7671Tribonema minus UTEX_B_3156 CDSContig_75 597732..598052 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|334234Trimin1|334234|MIX42997_2_32Tribonema minus UTEX_B_3156 polypeptideContig_75 597732..598052 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7671 ID=mRNA_7671|Name=jgi.p|Trimin1|334234|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_75:597732..598052+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGGTGGCAATGCCACCTGCAAGTCGGTAGCATCGCCGTTCATCGATTGGC
GGGGCGCCAACCTTATGCTGTGGTGCATGCTCCCCATTCCGCAGGGCATA
CACCCCTGCATTTGGCCTGTCGGTATGGACACGTGTCCGTGGCACTGGCA
CTGCTCATCAAGGGTTGCGATATAGACGCGTGCGATAGCGAAGGCAACAC
GCCGCTGCACAAGGCGGCCTCCAACAACCACGCTGCGTTGTGCAAGGAGC
TTGTGCGACGCGGCGCGGACTTGGCTAGGGCAAACAACAGCAGATTCACA
GCGCTTCATTGGGCAGCATAC
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protein sequence of jgi.p|Trimin1|334234

>Trimin1|334234|MIX42997_2_32 ID=Trimin1|334234|MIX42997_2_32|Name=jgi.p|Trimin1|334234|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
WWQCHLQVGSIAVHRLAGRQPYAVVHAPHSAGHTPLHLACRYGHVSVALA
LLIKGCDIDACDSEGNTPLHKAASNNHAALCKELVRRGADLARANNSRFT
ALHWAAY
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mRNA from alignment at Contig_75:597732..598052+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7671 ID=mRNA_7671|Name=jgi.p|Trimin1|334234|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_75:597732..598052+ (Tribonema minus UTEX_B_3156 )
TGGTGGCAATGCCACCTGCAAGTCGGTAGCATCGCCGTTCATCGATTGGC
GGGGCGCCAACCTTATGCTGTGGTGCATGCTCCCCATTCCGCAGGGCATA
CACCCCTGCATTTGGCCTGTCGGTATGGACACGTGTCCGTGGCACTGGCA
CTGCTCATCAAGGGTTGCGATATAGACGCGTGCGATAGCGAAGGCAACAC
GCCGCTGCACAAGGCGGCCTCCAACAACCACGCTGCGTTGTGCAAGGAGC
TTGTGCGACGCGGCGCGGACTTGGCTAGGGCAAACAACAGCAGATTCACA
GCGCTTCATTGGGCAGCATAC
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Coding sequence (CDS) from alignment at Contig_75:597732..598052+

>mRNA_7671 ID=mRNA_7671|Name=jgi.p|Trimin1|334234|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_75:597732..598052+ (Tribonema minus UTEX_B_3156 )
TGGTGGCAATGCCACCTGCAAGTCGGTAGCATCGCCGTTCATCGATTGGC
GGGGCGCCAACCTTATGCTGTGGTGCATGCTCCCCATTCCGCAGGGCATA
CACCCCTGCATTTGGCCTGTCGGTATGGACACGTGTCCGTGGCACTGGCA
CTGCTCATCAAGGGTTGCGATATAGACGCGTGCGATAGCGAAGGCAACAC
GCCGCTGCACAAGGCGGCCTCCAACAACCACGCTGCGTTGTGCAAGGAGC
TTGTGCGACGCGGCGCGGACTTGGCTAGGGCAAACAACAGCAGATTCACA
GCGCTTCATTGGGCAGCATAC
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