mRNA_7659 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170807
Unique NamemRNA_7659
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170807 vs. uniprot
Match: A0A835ZIY5_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIY5_9STRA)

HSP 1 Score: 145 bits (366), Expect = 3.390e-44
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 
Query:    1 MDPALRKEFVLDAGKKGCTGMFWRSEPRMGATASASDWPRNGTVLHGWYVQEHPGWVRIDHPNG 192
            MDPALRKEFVLDAG KGCTGMFWRSEPRMGATASASDWPRNG+VLHGWYVQEHPGWVRIDHPNG
Sbjct:    1 MDPALRKEFVLDAGSKGCTGMFWRSEPRMGATASASDWPRNGSVLHGWYVQEHPGWVRIDHPNG 64
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BLAST of jgi.p|Trimin1|170807 vs. uniprot
Match: D7FVU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVU9_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 5.400e-30
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:    1 MDPALRKEFVLDAGKKGCTGMFWRSEPRMGATASASDWPRNGTVLHGWYVQEHPGWVRIDHPNG 192
            MD A  K F LDA   GC+GMFWR++P MG+T S+SDWPRNGT+L GWYV EHPGWV+IDHP G
Sbjct:    1 MDAAAAKSFKLDASAGGCSGMFWRTKPEMGSTTSSSDWPRNGTMLKGWYVTEHPGWVKIDHPEG 64
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BLAST of jgi.p|Trimin1|170807 vs. uniprot
Match: A0A250X2J7_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250X2J7_9CHLO)

HSP 1 Score: 97.8 bits (242), Expect = 5.340e-25
Identity = 40/55 (72.73%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   28 VLDAGKKGCTGMFWRSEPRMGATASASDWPRNGTVLHGWYVQEHPGWVRIDHPNG 192
             LDA K GCTGMFWRS+P M ATASA DWPRNGT L GW  + +PGWV+IDHPNG
Sbjct:   33 TLDASKGGCTGMFWRSKPSMNATASAPDWPRNGTELQGWISKANPGWVKIDHPNG 87
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BLAST of jgi.p|Trimin1|170807 vs. uniprot
Match: A0A7S0S545_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0S545_9CHLO)

HSP 1 Score: 92.8 bits (229), Expect = 7.910e-23
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    4 DPALRKEFVLDAGKKGCTGMFWRSEPRMGATASASDWPRNGTVLHGWYVQEHPGWVRIDHPNG 192
            D + +  F LDA + GCTGM+WRS+P M A+ SA DWPRNG  L GW    HPGWV++DHP G
Sbjct:   43 DASTKINFTLDASQNGCTGMYWRSKPDMNASVSAPDWPRNGAKLQGWKSVAHPGWVKVDHPQG 105
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BLAST of jgi.p|Trimin1|170807 vs. uniprot
Match: A0A150GII6_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GII6_GONPE)

HSP 1 Score: 91.7 bits (226), Expect = 1.810e-22
Identity = 35/52 (67.31%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   31 LDAGKKGCTGMFWRSEPRMGATASASDWPRNGTVLHGWYVQEHPGWVRIDHP 186
            +DA K GCTGMFWRS+P M A+ +A DWPRNGTV  GW   EHPGWV++DHP
Sbjct:   43 MDASKNGCTGMFWRSKPDMNASVNAPDWPRNGTVFKGWKSVEHPGWVKVDHP 94
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BLAST of jgi.p|Trimin1|170807 vs. uniprot
Match: A0A6H5KXI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI4_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 6.470e-22
Identity = 36/55 (65.45%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:    1 MDPALRKEFVLDAGKKGCTGMFWRSEPRMGATASASDWPRNGTVLHGWYVQEHPG 165
            MD A  K F LDA   GC+GMFWR++P MG+T S+ DWPRNGT+L GWYV EHPG
Sbjct:    1 MDAAAAKSFKLDASAGGCSGMFWRTKPEMGSTTSSPDWPRNGTMLKGWYVAEHPG 55
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BLAST of jgi.p|Trimin1|170807 vs. uniprot
Match: A0A7S2LE06_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LE06_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 2.790e-5
Identity = 22/55 (40.00%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   25 FVLDAGKKGCTGMFWRSEPRMGATASASDWPRNGTVLHGWYVQEHPG---WVRID 180
            + L     GCTGMFWR++PR    A + +WPR+G  L G  V + PG   ++++D
Sbjct:    5 YELKKDSPGCTGMFWRADPRDSKGAPSDNWPRDGAELKGTVV-DVPGKGKYLQVD 58
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BLAST of jgi.p|Trimin1|170807 vs. uniprot
Match: A0A1Q9C3M8_SYMMI (Uncharacterized protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9C3M8_SYMMI)

HSP 1 Score: 47.0 bits (110), Expect = 4.030e-5
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:   49 GCTGMFWRSEPRMGATASASDWPRNGTVLHG 141
            GCTGMFWR++PR G   +  +WPR+G  L G
Sbjct:   16 GCTGMFWRADPRSGQKGTMDNWPRDGAQLKG 46
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BLAST of jgi.p|Trimin1|170807 vs. uniprot
Match: A0A812RXU6_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812RXU6_9DINO)

HSP 1 Score: 47.0 bits (110), Expect = 6.380e-5
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:   49 GCTGMFWRSEPRMGATASASDWPRNGTVLHG 141
            GCTGMFWR++PR G   +  +WPR+G  L G
Sbjct:   39 GCTGMFWRADPRSGQKGTMDNWPRDGAQLKG 69
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BLAST of jgi.p|Trimin1|170807 vs. uniprot
Match: A0A7S3PNV4_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PNV4_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 9.860e-5
Identity = 20/41 (48.78%), Postives = 27/41 (65.85%), Query Frame = 1 
Query:   25 FVLDAGKKGCTGMFWRSEPRMG--ATASASDWPRNGTVLHG 141
            + L+    GCTGMFWR +PR G  ++ S S+WPR+G  L G
Sbjct:  184 YSLEKNSAGCTGMFWRPDPRPGQKSSGSGSNWPRDGAQLKG 224
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170807 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A835ZIY5_9STRA3.390e-4496.88Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
D7FVU9_ECTSI5.400e-3068.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A250X2J7_9CHLO5.340e-2572.73Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A7S0S545_9CHLO7.910e-2357.14Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A150GII6_GONPE1.810e-2267.31Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A6H5KXI4_9PHAE6.470e-2265.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2LE06_9STRA2.790e-540.00Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1Q9C3M8_SYMMI4.030e-554.84Uncharacterized protein n=1 Tax=Symbiodinium micro... [more]
A0A812RXU6_9DINO6.380e-554.84Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP... [more]
A0A7S3PNV4_9STRA9.860e-548.78Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:534570..534776 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170807|e_gw1.75.151.1
Max annot lvl2759|Eukaryota
EggNOG OGs2C7IW@1|root,2SCDY@2759|Eukaryota
Evalue8.85e-31
Seed ortholog2880.D7FVU9
Hectar predicted targeting categoryother localisation
TranscriptId171129
TrackFilteredModels1
ProteinId170807
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170807gene_7659Tribonema minus UTEX_B_3156 geneContig_75 534570..534776 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7659_1exon_7659_1Tribonema minus UTEX_B_3156 exonContig_75 534570..534776 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7659CDS_7659Tribonema minus UTEX_B_3156 CDSContig_75 534570..534776 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170807Trimin1|170807|e_gw1.75.151.1Tribonema minus UTEX_B_3156 polypeptideContig_75 534570..534776 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7659 ID=mRNA_7659|Name=jgi.p|Trimin1|170807|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=207bp|location=Sequence derived from alignment at Contig_75:534570..534776- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGACCCCGCCCTGCGAAAAGAATTTGTGCTCGATGCTGGCAAGAAGGG
CTGCACCGGCATGTTCTGGCGCTCTGAGCCCCGCATGGGGGCCACTGCCA
GTGCGTCCGACTGGCCGCGCAATGGCACCGTCCTTCACGGCTGGTACGTG
CAGGAGCACCCTGGGTGGGTGAGGATTGACCACCCCAATGGCACTGAATG
CCAGTAG
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protein sequence of jgi.p|Trimin1|170807

>Trimin1|170807|e_gw1.75.151.1 ID=Trimin1|170807|e_gw1.75.151.1|Name=jgi.p|Trimin1|170807|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=69bp
MDPALRKEFVLDAGKKGCTGMFWRSEPRMGATASASDWPRNGTVLHGWYV
QEHPGWVRIDHPNGTECQ*
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mRNA from alignment at Contig_75:534570..534776-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7659 ID=mRNA_7659|Name=jgi.p|Trimin1|170807|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=207bp|location=Sequence derived from alignment at Contig_75:534570..534776- (Tribonema minus UTEX_B_3156 )
ATGGACCCCGCCCTGCGAAAAGAATTTGTGCTCGATGCTGGCAAGAAGGG
CTGCACCGGCATGTTCTGGCGCTCTGAGCCCCGCATGGGGGCCACTGCCA
GTGCGTCCGACTGGCCGCGCAATGGCACCGTCCTTCACGGCTGGTACGTG
CAGGAGCACCCTGGGTGGGTGAGGATTGACCACCCCAATGGCACTGAATG
CCAGTAG
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Coding sequence (CDS) from alignment at Contig_75:534570..534776-

>mRNA_7659 ID=mRNA_7659|Name=jgi.p|Trimin1|170807|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=207bp|location=Sequence derived from alignment at Contig_75:534570..534776- (Tribonema minus UTEX_B_3156 )
ATGGACCCCGCCCTGCGAAAAGAATTTGTGCTCGATGCTGGCAAGAAGGG
CTGCACCGGCATGTTCTGGCGCTCTGAGCCCCGCATGGGGGCCACTGCCA
GTGCGTCCGACTGGCCGCGCAATGGCACCGTCCTTCACGGCTGGTACGTG
CAGGAGCACCCTGGGTGGGTGAGGATTGACCACCCCAATGGCACTGAATG
CCAGTAG
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