mRNA_10576 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Match: A0A835YKZ9_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ9_9STRA) HSP 1 Score: 2157 bits (5590), Expect = 0.000e+0 Identity = 1349/1349 (100.00%), Postives = 1349/1349 (100.00%), Query Frame = 1
Query: 1 MGTGLTLVDGNVGCDGSSSSIRCSSLDLERCSDDGKKIKLVSKQNTAFNVTACAATRTFFDRVMTYASELQAHQQKQKQQRAAASTTASKDQRAPLRKPAVAAPAAFVPPRLQSHVAAKAPVVSTCRAADPLSLDDVFSANSSQKSHGSSDKVPIKAGSIGGGDGTLFGSAAAKPRTAVAGNAAVIHKKSAAQGGVATALTRGDGASGLTQPLFQRPSAHQAAQTAGRSXXXXXXXXERGSSGGGXXXXXGQIGTLAAQALGVGSQGARTAQRLPVRPTQQPSYQRWTGPRPSISSSLSRNMWPSNGTAPGLGRGLAAASAVNAAAAPRSEGFRNLGNTCYLNATLQALLGLKEFVDDLQASVWARAILAREGAPAQCAAGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQPGDAALYRALLQLALVAHGGRHGVLTPHRLKAAMDAHSDRFAGNLQQDAHEFFGDLINALQEEMEPYAPAVAQLLGLPKPPPXXXXXXPAALETPALARHAHTDDGITPVRKGFDVAASAAASDRGEAALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAATLLPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLDVVGGGGSXXXXXXXXXXXXXSVPLSRLLARFFARRKLELSCERCDDGGTAIAHYVMGALPGVLVLHIKRFRYQPNSQSFIKLSTPVDLPLTVEAAAPVTSAFGGECDELKKSKENTEAAXXXXXXXXXXXXXXXXXXXXXXACKRRVGRRGRVVRRLLQLSSARHRRRSRAGQTPVGLCGVSPLLDLDMSPYCNDATANHTRAPPLGPPCPRSAAEKWGLSLSEVEPAAXXXXXXXXXXXXXSPVLLAHGNGTFTAANSGYGGGYRNGGYAHGGGGSAAPAPAYASFPRAAESVPPRASENAFSGNCVAKKQRVMAGGSALRAGGGVGAAGLRALTEGTALQQPLQDGGASGRGAQRVTAGPAAQFRALPIDENAPAASARAPLAQPFASAPPRPGLHGGASSSAGQRTYGRGSSSRGTNLVYGIGGXXXXXXXXXPALAGGLADYHGALHASPSAAIASAHRGYLTPTPHTPPLRTPPLHAATAVPLSEEDQLKMAMQESRKIAAATETQRAADDAEELQKAMALSLADAARVCCYCDAPLPHARAEPHCAACAHVVEAAPSPPSDPMDVDPPPFDDAAAALDGDDAAAEAAQRADDGPLEEGADAGAEGKGEAEAPRPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVRSGGGAARWRRYDDSEVRDVAERDAVGGAARATCYLAFYELCE 4047
MGTGLTLVDGNVGCDGSSSSIRCSSLDLERCSDDGKKIKLVSKQNTAFNVTACAATRTFFDRVMTYASELQAHQQKQKQQRAAASTTASKDQRAPLRKPAVAAPAAFVPPRLQSHVAAKAPVVSTCRAADPLSLDDVFSANSSQKSHGSSDKVPIKAGSIGGGDGTLFGSAAAKPRTAVAGNAAVIHKKSAAQGGVATALTRGDGASGLTQPLFQRPSAHQAAQTAGRSXXXXXXXXERGSSGGGXXXXXGQIGTLAAQALGVGSQGARTAQRLPVRPTQQPSYQRWTGPRPSISSSLSRNMWPSNGTAPGLGRGLAAASAVNAAAAPRSEGFRNLGNTCYLNATLQALLGLKEFVDDLQASVWARAILAREGAPAQCAAGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQPGDAALYRALLQLALVAHGGRHGVLTPHRLKAAMDAHSDRFAGNLQQDAHEFFGDLINALQEEMEPYAPAVAQLLGLPKPPPXXXXXXPAALETPALARHAHTDDGITPVRKGFDVAASAAASDRGEAALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAATLLPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLDVVGGGGSXXXXXXXXXXXXXSVPLSRLLARFFARRKLELSCERCDDGGTAIAHYVMGALPGVLVLHIKRFRYQPNSQSFIKLSTPVDLPLTVEAAAPVTSAFGGECDELKKSKENTEAAXXXXXXXXXXXXXXXXXXXXXXACKRRVGRRGRVVRRLLQLSSARHRRRSRAGQTPVGLCGVSPLLDLDMSPYCNDATANHTRAPPLGPPCPRSAAEKWGLSLSEVEPAAXXXXXXXXXXXXXSPVLLAHGNGTFTAANSGYGGGYRNGGYAHGGGGSAAPAPAYASFPRAAESVPPRASENAFSGNCVAKKQRVMAGGSALRAGGGVGAAGLRALTEGTALQQPLQDGGASGRGAQRVTAGPAAQFRALPIDENAPAASARAPLAQPFASAPPRPGLHGGASSSAGQRTYGRGSSSRGTNLVYGIGGXXXXXXXXXPALAGGLADYHGALHASPSAAIASAHRGYLTPTPHTPPLRTPPLHAATAVPLSEEDQLKMAMQESRKIAAATETQRAADDAEELQKAMALSLADAARVCCYCDAPLPHARAEPHCAACAHVVEAAPSPPSDPMDVDPPPFDDAAAALDGDDAAAEAAQRADDGPLEEGADAGAEGKGEAEAPRPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVRSGGGAARWRRYDDSEVRDVAERDAVGGAARATCYLAFYELCE
Sbjct: 1 MGTGLTLVDGNVGCDGSSSSIRCSSLDLERCSDDGKKIKLVSKQNTAFNVTACAATRTFFDRVMTYASELQAHQQKQKQQRAAASTTASKDQRAPLRKPAVAAPAAFVPPRLQSHVAAKAPVVSTCRAADPLSLDDVFSANSSQKSHGSSDKVPIKAGSIGGGDGTLFGSAAAKPRTAVAGNAAVIHKKSAAQGGVATALTRGDGASGLTQPLFQRPSAHQAAQTAGRSXXXXXXXXERGSSGGGXXXXXGQIGTLAAQALGVGSQGARTAQRLPVRPTQQPSYQRWTGPRPSISSSLSRNMWPSNGTAPGLGRGLAAASAVNAAAAPRSEGFRNLGNTCYLNATLQALLGLKEFVDDLQASVWARAILAREGAPAQCAAGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQPGDAALYRALLQLALVAHGGRHGVLTPHRLKAAMDAHSDRFAGNLQQDAHEFFGDLINALQEEMEPYAPAVAQLLGLPKPPPXXXXXXPAALETPALARHAHTDDGITPVRKGFDVAASAAASDRGEAALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAATLLPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLDVVGGGGSXXXXXXXXXXXXXSVPLSRLLARFFARRKLELSCERCDDGGTAIAHYVMGALPGVLVLHIKRFRYQPNSQSFIKLSTPVDLPLTVEAAAPVTSAFGGECDELKKSKENTEAAXXXXXXXXXXXXXXXXXXXXXXACKRRVGRRGRVVRRLLQLSSARHRRRSRAGQTPVGLCGVSPLLDLDMSPYCNDATANHTRAPPLGPPCPRSAAEKWGLSLSEVEPAAXXXXXXXXXXXXXSPVLLAHGNGTFTAANSGYGGGYRNGGYAHGGGGSAAPAPAYASFPRAAESVPPRASENAFSGNCVAKKQRVMAGGSALRAGGGVGAAGLRALTEGTALQQPLQDGGASGRGAQRVTAGPAAQFRALPIDENAPAASARAPLAQPFASAPPRPGLHGGASSSAGQRTYGRGSSSRGTNLVYGIGGXXXXXXXXXPALAGGLADYHGALHASPSAAIASAHRGYLTPTPHTPPLRTPPLHAATAVPLSEEDQLKMAMQESRKIAAATETQRAADDAEELQKAMALSLADAARVCCYCDAPLPHARAEPHCAACAHVVEAAPSPPSDPMDVDPPPFDDAAAALDGDDAAAEAAQRADDGPLEEGADAGAEGKGEAEAPRPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVRSGGGAARWRRYDDSEVRDVAERDAVGGAARATCYLAFYELCE 1349
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Match: A0A6H5KUE2_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUE2_9PHAE) HSP 1 Score: 110 bits (275), Expect = 1.570e-20 Identity = 84/181 (46.41%), Postives = 95/181 (52.49%), Query Frame = 1
Query: 985 RSEGFRNLGNTCYLNATLQALLGLKEFVDDLQASVWARAILAREGAPAQCAAGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQPGDAALYRALLQLALVAHGGRHGVLTPHRLKAAMDAHSDRFAGNLQQDAHEFFGDLINALQEEMEPYAPAVAQLLGLP 1527
R EGFRN+GNTCYLNA LQ LL L +FV DL+ W A+L P A G G XXXXXXXXXX LY ALL+L+L A G HG++ LK AMD HSDRFAGNLQQDAHEF GDL+NAL EE +P A +G P
Sbjct: 360 RREGFRNMGNTCYLNACLQGLLSLSDFVGDLRRKCWVLAMLKP---PPPAATGGIDGDRVDVAGDGNGGGDHAIDIRDSPHRRAVAVNGDDXXXXXXXXXXXXXX--ILYEALLRLSLEARGS-HGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLGDLVNALHEETQPRLDIAAGYVGKP 534
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Match: D7G2P5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P5_ECTSI) HSP 1 Score: 110 bits (274), Expect = 2.280e-20 Identity = 85/181 (46.96%), Postives = 95/181 (52.49%), Query Frame = 1
Query: 985 RSEGFRNLGNTCYLNATLQALLGLKEFVDDLQASVWARAILAREGAPAQCAAGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQPGDAALYRALLQLALVAHGGRHGVLTPHRLKAAMDAHSDRFAGNLQQDAHEFFGDLINALQEEMEPYAPAVAQLLGLP 1527
R EGFRN+GNTCYLNA LQ LL L FV DL+ W A+L P A G G XXXXXXXXXXX P LY ALL+L+L A G HG++ LK AMD HSDRFAGNLQQDAHEF GDL+N L EE +P A +G P
Sbjct: 255 RREGFRNMGNTCYLNACLQGLLSLSGFVGDLRRKCWVLAMLKP---PPPAATGGVDGDRVDVAGGGDGGGDDAIDIRDSPHPRAVAVNDDXXXXXXXXXXXPLP--PILYEALLRLSLEARGS-HGLMDASPLKRAMDRHSDRFAGNLQQDAHEFLGDLVNVLHEETQPRLDIAAGYVGKP 429
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Match: A0A6H5KST6_9PHAE (RanBP2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KST6_9PHAE) HSP 1 Score: 86.3 bits (212), Expect = 2.270e-14 Identity = 49/106 (46.23%), Postives = 55/106 (51.89%), Query Frame = 1
Query: 3808 EAPRPPRDAPLKARYRLAAVLHHLGPHAFAGHYVACVRS---------------------GGGAAR-------WRRYDDSEVRDVAERDAVGGAARATCYLAFYEL 4041
+APR PR PL+ARY L +LHHLG HAFAGHYV VR GG R W RYDDS V V E +A+GG A+ TCYL FY L
Sbjct: 190 QAPRVPRKGPLRARYELRGILHHLGRHAFAGHYVTDVREERSGXXXXXXXXXXXXXXXSQGGKTEREXXXGRGWSRYDDSVVSPVTEAEALGGEAQRTCYLCFYSL 295
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Match: C1MI45_MICPC (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MI45_MICPC) HSP 1 Score: 75.9 bits (185), Expect = 5.410e-10 Identity = 135/438 (30.82%), Postives = 170/438 (38.81%), Query Frame = 1
Query: 982 PRSEGFRNLGNTCYLNATLQALLGLKEFVDDLQASVWARAILAREGAPAQCAAGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQPGDAAL--------YRALLQLALVAHGGRHGVLTPHRLKAAMDAHSDRFAGNLQQDAHEFFGDLINALQEEMEPY-----APAVAQLLGLPKPPPXXXXXXPAALETPALARHAHTDDGITPVRKGFDVAASAAASDRGEAALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAATLLPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLDVVGGGGSXXXXXXXXXXXXXSVPLSRLLARFFARRKLELSCER--CDDGGTAIAHYVMGALPGVLVLHIKRFRYQPNSQSFIKLSTPVDLPLTVEAAA 2250
PR+ G NLGNTCYLNATLQ L GL+ F D A ARA A + DAA+ Y A A G L+P +K A+ R+ G Q DAHEF + I+AL+EE+ A A G+P P XXXXX A A T + P R A + G XXXXXXXXXXXXXXXX L TL P+ R F V +L C CG T + E + S+++ G G XXXXXXXX +VPL LL FFA LE +CE+ CD ++ ++ LP VLV+H+KRFR+ + + D+ L A A
Sbjct: 368 PRTPGLTNLGNTCYLNATLQVLCGLECFARDTCADALARAPFADDSV--------------------------------YYAMRKLVKARKEKEANARRLKVNAAADAAVGLAPATFSYHTPAPGAKGAPGANQWSLSPAEVKRAVTRRHRRYEGYAQHDAHEFLCECIDALEEEVTRMYRVGELDAGAASGGVPAPXXXXXXXAAVGAYKRKAAAEATTPEQTLPKR---------ATGEDGPXXXXXXXXXXXXXXXXXXXXPSAGATIVP--------------------------LHRTLCPTRRNFTTAVAATLTCDACGDTCVKHETFRHLSVEIPVGTGXXXXXXXXXAANLGAVPLESLLNGFFAAETLERTCEKPGCDGKRATLSRKIV-RLPRVLVVHLKRFRFVESLSGANDENADADVVLGKHAGA 737
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Match: A0A7S2G917_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G917_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 5.840e-9 Identity = 50/147 (34.01%), Postives = 67/147 (45.58%), Query Frame = 1
Query: 1915 GYTRRRPEPYMDFSLDVVGGGGSXXXXXXXXXXXXXSVPLS--RLLARFFARRKLELSCERCDDGGTAIAHYVMGALPGVLVLHIKRFRYQPNSQSFIKLSTPVDLPLTVEAAA-----------PVTSAFGGECDELKKSKENTEA 2316
GY R R E Y DFSLD+ G S P S LL FF+ +L+L CE+C ++ + ALPGVLVLH+KRF+ N SF+K + PV++ V+ A P + FG + S T A
Sbjct: 1 GYKRMRVEHYRDFSLDIPG-------------VDEASTPFSITSLLRSFFSSTQLDLQCEKCMCQSVR-SYRRLSALPGVLVLHLKRFQADLNLTSFVKNARPVEVEEHVDVAEYCTKYSTNPLRPAPNVFGPRSTKYADSHAETTA 133
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Match: A0A7S0K999_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0K999_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 9.560e-8 Identity = 111/426 (26.06%), Postives = 150/426 (35.21%), Query Frame = 1
Query: 991 EGFRNLGNTCYLNATLQALLGLKEFVDDLQASVWARAI-----------LAREGAPAQCAAGSSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKQPGDAALYRALLQLA----------------LVAHGGRHGVLTPHRLKAAMDAHSDRFAGNLQQDAHEFFGDLINALQEEMEPYAPAVAQLLGLPKPPPXXXXXXPAALETPALARHAHTDDGITPVRKGFDVAASAAASDRGEAALSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAATLLPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLDVVGGGGSXXXXXXXXXXXXXSVPLSRLLARFFARRKLELSCERCDDGGTAIAHYVMGALPGVLVLHIKRFRYQPN 2187
+G RNLGNTCYLN+ LQAL L F DL +A+ + EG GS + ++LYR+LL +A L+ V+ P +K A+D + F G LQQDAHEF +LI+ L +E+E + P T + D+G + + A R + + XXXXXXXXXXXX + +L P+ R F EV++SL C C YTR R E Y SLDVVG S + RFF+ +KL L CE+C +AI + L L+LH+KRF N
Sbjct: 86 KGLRNLGNTCYLNSGLQALFALPNFCRDLAQLELVKAVYDGFIDRSKMKVQEEGKKENVNEGSGNECENKHEEAQRVESNEGNNKYDDMWM------------------------SSLYRSLLIVAVGLGRINVSNTPYLSTLLNLSASEEVVDPRVVKDAIDRVTSNFIGYLQQDAHEFLTELIDRLHDELEDVLSTKDCVTSESTLAPEGRVGEEM---TSSKILSTEQDEGFVMINHKQEEPEEAHERLRSLSEVLISEKLXXXXXXXXXXXXMNVEQIRELLHSDSNDGRKRNSNNDKDNICKSQTYSPSLFPTQRNFATEVEVSLTCCSCMYTRTRKELYRHLSLDVVGNSSSPSVIEDG-------------IRRFFSPQKLCLKCEKCFCD-SAIQKMEISKLSNGLLLHLKRFEVTLN 470
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Match: A0A329SZM9_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZM9_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 1.200e-7 Identity = 54/223 (24.22%), Postives = 81/223 (36.32%), Query Frame = 1
Query: 1855 LPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLD---------------------------------VVGGGGSXXXXXXXXXXXXX----------------------------------------SVPLSRLLARFFARRKLELSCERCDDGGTAIAHYVMGALPGVLVLHIKRFRYQPNSQSFIKLSTPVDLPLTVEAAAPV--TSAFGGECDELKKS 2298
LP A+ F AE++ +L CR CGY+R++ E + DFSLD V G G+ + L L+ + F LEL+CE+C DG A + Y + +LP VLV H+KRF P++ + K PV P ++ + T+ GG+ + KS
Sbjct: 557 LPPAKCFRAELNRTLTCRKCGYSRKQAETFYDFSLDLPYHSIPEPEPTAEQEPQAPPSPERQCFCNLTPVTSGEGNGRYYCCPKASCSYREKYVESEEPAQSPAKATDTVMKPAVTPSTPAPGWPARPPQIELETLIQKQFETEVLELTCEKCTDGKEAESAYQVKSLPSVLVFHLKRFEVNPHTGALFKRCDPVVPPAVIDPTRSINYTAPSGGDSRYVLKS 779
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Match: W2NL18_PHYPR (Ubiquitin carboxyl-terminal hydrolase n=7 Tax=Phytophthora TaxID=4783 RepID=W2NL18_PHYPR) HSP 1 Score: 65.1 bits (157), Expect = 1.060e-6 Identity = 50/204 (24.51%), Postives = 72/204 (35.29%), Query Frame = 1
Query: 1855 LPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLD---------------------------------VVGGGG------------------------------------------SXXXXXXXXXXXXXSVPLSRLLARFFARRKLELSCERCDDGGTAIAHYVMGALPGVLVLHIKRFRYQPNSQSFIKLSTPVDLPLTVE 2241
LP A+ F AE++ +L CR CGY+R++ E + DFSLD V G G S + L L+ + F LEL+CE+C DG A + Y + +LP VLV H+KRF P++ + K PV P ++
Sbjct: 558 LPPAKCFRAELNRTLTCRKCGYSRKKAETFYDFSLDLPYHSIPAPEPTAEQEPQAPPSPERQCFCNLTPVTSGEGNERYYCCPKASCSYRDRYVESGEPARSPAKTTDTMVKSAAAPSSTLAARGWPARPPQIELETLVQKQFETEVLELTCEKCKDGKEAESAYQIKSLPSVLVFHLKRFEVNPHTGALFKRCDPVIPPAVID 761
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Match: A0A2P4XMS7_9STRA (Ubiquitin-specific protease n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XMS7_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.160e-6 Identity = 54/222 (24.32%), Postives = 79/222 (35.59%), Query Frame = 1
Query: 1855 LPSARAFHAEVDMSLRCRGCGYTRRRPEPYMDFSLD---------------------------------VVGGGG---------------------------------------SXXXXXXXXXXXXXSVPLSRLLARFFARRKLELSCERCDDGGTAIAHYVMGALPGVLVLHIKRFRYQPNSQSFIKLSTPVDLPLTVEAAAPVT--SAFGGECDELKKS 2298
LP A+ F AE++ +L CR CGY+R++ E + DFSLD V G G S + L L+ + F LEL+CE+C DG A + Y + +LP VLV H+KRF P++ + K PV P ++ + S G E + +S
Sbjct: 801 LPPAKCFRAELNRTLTCRKCGYSRKKTETFYDFSLDLPYYPVLEQEPTAEEXXQAPPSPERQCFCNHTPVQTGEGIERYYCCPKASCSYREKIVESEESTSPTKSSDTVMKNALSPSTPAPGLQPRPHPIELETLIRKQFETEVLELTCEKCKDGKEAESAYQVQSLPSVLVFHLKRFEVNPHTGALFKRCDPVVPPAVIDPTHSINNCSPSGSEARYVLRS 1022 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350868 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 18
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10576 ID=mRNA_10576|Name=jgi.p|Trimin1|350868|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4282bp|location=Sequence derived from alignment at Contig_74:586087..594786- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGCACGGGCCTGACTCTAGTGGACGGGAATGTGGGGTGCGATGGCAGback to top protein sequence of jgi.p|Trimin1|350868 >Trimin1|350868|estExt_Genemark1.C_Ctg_740060 ID=Trimin1|350868|estExt_Genemark1.C_Ctg_740060|Name=jgi.p|Trimin1|350868|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1350bp MGTGLTLVDGNVGCDGSSSSIRCSSLDLERCSDDGKKIKLVSKQNTAFNVback to top mRNA from alignment at Contig_74:586087..594786- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10576 ID=mRNA_10576|Name=jgi.p|Trimin1|350868|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8700bp|location=Sequence derived from alignment at Contig_74:586087..594786- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_74:586087..594786- >mRNA_10576 ID=mRNA_10576|Name=jgi.p|Trimin1|350868|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=4050bp|location=Sequence derived from alignment at Contig_74:586087..594786- (Tribonema minus UTEX_B_3156 )back to top |