mRNA_12897 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350835
Unique NamemRNA_12897
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Match: A0A835YKQ4_9STRA (FYVE-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKQ4_9STRA)

HSP 1 Score: 1025 bits (2650), Expect = 0.000e+0
Identity = 660/660 (100.00%), Postives = 660/660 (100.00%), Query Frame = 1 
Query:    1 MASAVEDGSLYKSFSNTSNKGVQSPITQSRRSSSASRTGSFFGPSPLNSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAKREGYPPPGPRPRAGSSXXXSSDDSLDKGHNALNSALIKATVLXXXXXXXXXXXXXXXXXAMAREASGSSIVSLGGGLWLGDRGRSYSTSSLAETVGLGGGGLTHLRTYVWAEDERASKCCGCARPFDLFCRRHHCFDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAHTEDQGIANGDARGCGRIFCAGCSDRRLLVLDPLSAPGRRPADPRVPHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEALSRVDRLLHQDLFAPPPPSAAPALKNE 1980
            MASAVEDGSLYKSFSNTSNKGVQSPITQSRRSSSASRTGSFFGPSPLNSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAKREGYPPPGPRPRAGSSXXXSSDDSLDKGHNALNSALIKATVLXXXXXXXXXXXXXXXXXAMAREASGSSIVSLGGGLWLGDRGRSYSTSSLAETVGLGGGGLTHLRTYVWAEDERASKCCGCARPFDLFCRRHHCFDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAHTEDQGIANGDARGCGRIFCAGCSDRRLLVLDPLSAPGRRPADPRVPHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEALSRVDRLLHQDLFAPPPPSAAPALKNE
Sbjct:    1 MASAVEDGSLYKSFSNTSNKGVQSPITQSRRSSSASRTGSFFGPSPLNSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRAKREGYPPPGPRPRAGSSXXXSSDDSLDKGHNALNSALIKATVLXXXXXXXXXXXXXXXXXAMAREASGSSIVSLGGGLWLGDRGRSYSTSSLAETVGLGGGGLTHLRTYVWAEDERASKCCGCARPFDLFCRRHHCFDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAHTEDQGIANGDARGCGRIFCAGCSDRRLLVLDPLSAPGRRPADPRVPHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEALSRVDRLLHQDLFAPPPPSAAPALKNE 660
[Close]
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Match: A0A6H5KXW6_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXW6_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 6.400e-47
Identity = 129/359 (35.93%), Postives = 181/359 (50.42%), Query Frame = 1 
Query:  859 RGCGRIFCAGCSDRRLLVLDPLSAPGRRPADPRVPHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEALSRVDRLLHQDL 1935
            R CG IFC  CS  R LV +P++ PG+ P DP  PHRVC  CY D+  SQ EL++ +S A+R+N  +  + A     + P    L HEVR+SA  LN +          L+RR+G    C                 LR +    +   L  GA G+  + + +AGF+  A  G                      GLCVARLPDG+WSAP+AV M G+SWGLQ G  V D ++ L ++AA+E+ +   Q    ++A +A+G  GR   +A+    G    G+         YS+SKGLFAG  V A  +     VNERFYG QV   +LL G +  P AA+ LY +L R++ +  + +
Sbjct:  475 RCCGAIFCQTCSRHRCLVPEPVTPPGKDPLDPTRPHRVCNACYADVQASQEELLSKVSKARRHNAFNTDSAAR--HCNPPFGLDLAHEVRKSANTLNNI----------LERRQG----CDCDGMNLM---------LRPEQR--ISQSLCRGAVGLVFVTIAKAGFLYAAEAGT---------------------GLCVARLPDGNWSAPAAVQMFGLSWGLQAGCEVVDVVIPLRSEAAVEMLKCGGQAYAKLDAAVAVGPMGRSVGSAVG---GRSWPGEAPAVDFAARYSLSKGLFAGFGVGAGFIRVADRVNERFYGAQVSPRNLLGGLMPRPPAANPLYSSLGRLENVTRKQM 782
[Close]
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Match: K3X8G2_GLOUD (FYVE-type domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8G2_GLOUD)

HSP 1 Score: 166 bits (419), Expect = 4.090e-42
Identity = 132/427 (30.91%), Postives = 182/427 (42.62%), Query Frame = 1 
Query:  634 TYVWAEDERASKCCGCARPFDLFCRRHHCFDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAHTEDQGIANGDARGCGRIFCAGCSDRRLLVLDP--LSAPGRR--PADPRVPHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEAL 1902
            T  W  D   S C GC   FD   R+HHC                                              R CG +FC  C+  R L+ +   LS P R+    +   P RVC  CY  +LP QAEL  ++SNA ++N +DE     +   ++P +FTL  E+R++A ++                                    P                L+  A+GIA L V++ GFV    +G                      GL VARLPDG WSAPSA+   GV WG Q GG +TD++++L+   A++ F S+ QV++G E G+  G  GR       VA+G +            +YS SKGLF G+S+E  ++ SRP VN  FYG  V   +LLRG    P+AAS LYEA+
Sbjct:   28 TVRWIPDAEVSLCFGCKLLFDWVRRKHHC----------------------------------------------RYCGYVFCDLCTTHRSLIREDQILSNPERQYLSVNGHNPQRVCDECYNALLPVQAELRETMSNAVQHNNIDEAGPKRF--LNSPYSFTLREEIRKAAYSVKNF----------------------MYQGVIKDQSIPL--------------PLITQAQGIAFLTVIKVGFVFTGRVGT---------------------GLVVARLPDGRWSAPSAIATAGVGWGAQIGGEITDFVIILNTKRAVDAFCSKGQVNLGAELGVCAGPVGR-------VASGGMEASSDLAVAPCYSYSHSKGLFVGISLEGSMILSRPDVNRAFYGRDVQVTELLRGMEPPPVAASPLYEAI 342
[Close]
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Match: A0A067CDH3_SAPPC (FYVE-type domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CDH3_SAPPC)

HSP 1 Score: 166 bits (420), Expect = 5.730e-42
Identity = 122/353 (34.56%), Postives = 173/353 (49.01%), Query Frame = 1 
Query:  859 RGCGRIFCAGCSDRRLLVLDP--LSAPGRRPADPRV--PHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEALS 1905
            R CG +FC  C+  R L+ D   L++P +R        P RVC  CY  +LP Q+ L A+ SNA + N + E     +   ++P +FTL  E+R++A ++                                       D +  D    L   LL  A+GIA L VL+ GFV    +G                      GL +A+LPDGSWSAPSA+   G+ WG Q GGGVTD++++L+  +A++ F ++ QV++G E G+A G  GR    A+    G +            +YS SKGLF G+SVE  VV +RP VN  FYG +V A DLL G+   P+AA  LY+AL+
Sbjct:   50 RYCGHVFCDLCTTFRSLIRDDKILTSPEKRYLSVNAYNPQRVCEPCYTLLLPDQSLLCATASNAVQPNSISEAGSKRF--LNSPYSFTLREEIRKAAYSVKNFMY----------------------------------DGVIKDQSIPL--PLLTNAKGIAFLTVLKVGFVVTGRVGT---------------------GLVIAKLPDGSWSAPSAIATAGIGWGAQIGGGVTDFVIILNTRSAVDTFCAQGQVNMGAELGVAAGPLGRVAAGAMEAGPGGIAP--------CYSYSHSKGLFIGISVEGSVVLARPDVNLEFYGKEVTAADLLSGRERPPVAAQPLYDALT 335
[Close]
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Match: A0A1W0A6W3_9STRA (FYVE domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6W3_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.330e-40
Identity = 131/429 (30.54%), Postives = 193/429 (44.99%), Query Frame = 1 
Query:  634 TYVWAEDERASKCCGCARPFDLFCRRHHCFDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAHTE-DQGIANG-DARGCGRIFCAGCSDRRLLVLDP--LSAPGRRPADPRV--PHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEAL 1902
            T  W  D   S C  C   FD   R+HHC                                W + E ++G     + +  G +FC  C+  R L+ +   L++P +R        P RVC  CY+ +LP QA L  + SNA + N + E     +   ++P +FTL  E+R++A ++                                       D +  D    L   L+  A+GIA L VL+AGFV    +G                      GL +A+LPDGSWSAPSA+   G+ WG Q GGGVTD++++L+  +A++ F ++ Q+++G E G+A G  GR    A+     +L  G +    +   YS SKGLF G+S+E  +V +RP VN  FYG  V A +LL G+   P+AA  LY+AL
Sbjct:    5 TIRWIPDAEVSLCRACGLLFDWVRRKHHC-------------------------RYVHVQKWRNLELNRGTNESRNIKTLGHVFCDLCTQFRCLIREDKILTSPEKRYLSVNAFNPQRVCEPCYKLLLPDQAVLCETSSNAVQPNSISESGSKRF--LNSPYSFTLREEIRKAAYSVKNFMY----------------------------------DGVIKDQSIPL--PLVTNAKGIAFLTVLKAGFVVTGRVGT---------------------GLVIAKLPDGSWSAPSAIATAGIGWGAQIGGGVTDFVIILNTRSAVDTFCAQGQINMGAELGVAAGPLGRVAAGAMEAGI-ALRPGGIAPCYS---YSHSKGLFIGISIEGSIVVARPDVNREFYGKSVTAAELLSGQERRPVAAQPLYDAL 345
[Close]
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Match: T0R042_SAPDV (Ysc84 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R042_SAPDV)

HSP 1 Score: 162 bits (409), Expect = 2.450e-40
Identity = 120/350 (34.29%), Postives = 171/350 (48.86%), Query Frame = 1 
Query:  868 GRIFCAGCSDRRLLVLDP--LSAPGRRPADPRV--PHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEALS 1905
            G +FC  C+  R L+ D   L++P +R        P RVC  CY  +LP Q+ L A+ SNA + N + E     +   ++P +FTL  E+R++A ++                                       D +  D    L   LL  A+GIA L VL+ GFV    +G                      GL +A+LPDGSWSAPSA+   G+ WG Q GGGVTD++++L+  +A++ F ++ QV++G E G+A G  GR    A+    G +            +YS SKGLF G+SVE  VV +RP VN  FYG +V A DLL G+   P+AA  LY+AL+
Sbjct:   62 GHVFCDLCTTFRSLIRDDKILTSPEKRYLSVNAYNPQRVCEPCYTLLLPDQSLLCATASNAVQPNSISEAGSKRF--LNSPYSFTLREEIRKAAYSVKNFMY----------------------------------DGVIKDQSIPL--PLLTNAKGIAFLTVLKVGFVVTGRVGT---------------------GLVIAKLPDGSWSAPSAIATAGIGWGAQIGGGVTDFVIILNTRSAVDTFCAQGQVNMGAELGVAAGPLGRVAAGAMEAGPGGIAP--------CYSYSHSKGLFIGISVEGSVVLARPDVNLEFYGKEVTAADLLSGREPPPVAAQPLYDALT 344
[Close]
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Match: A0A5D6Y5S5_9STRA (FYVE-type domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y5S5_9STRA)

HSP 1 Score: 160 bits (405), Expect = 5.130e-40
Identity = 131/427 (30.68%), Postives = 183/427 (42.86%), Query Frame = 1 
Query:  634 TYVWAEDERASKCCGCARPFDLFCRRHHCFDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAHTEDQGIANGDARGCGRIFCAGCSDRRLLV-LDPLSAPGRRP---ADPRVPHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEAL 1902
            T  W  D   S C GC   FD   R+HHC                                              R CG +FC  C+ RR L+  D + A   R     +   P RVC  C+  +LP+QAEL  ++SNA + N LDE AGA  +  ++P +FTL  E+R++A ++                                    P                LL  A+GIA L V++ GFV    +G                      GL +ARLPDG WSAPSA+   GV WG Q GG +TD+++VL+   A++ F S+ QV++G E G++ G  GR       VA G++            +YS SKGLF GLS+E  ++ +RP +N  FYG  V   +LL G    P+ A+ LY+A+
Sbjct:   14 TVRWIPDAEVSLCFGCQLLFDWVRRKHHC----------------------------------------------RFCGHVFCDLCTPRRSLIPADQILANPERQYLSVNAHNPQRVCDDCFNALLPAQAELRGTMSNAVQENELDE-AGAKRF-LNSPYSFTLREEIRKAAYSVKNF----------------------MYQGVIKDQSIPL--------------PLLTHAKGIAFLTVIKVGFVFTGRVGT---------------------GLVIARLPDGRWSAPSAIATAGVGWGAQIGGEITDFVIVLNTKRAVDAFCSKGQVNLGAELGVSAGPVGR-------VAAGAVEASADLAVAPCYSYSHSKGLFVGLSLEGSMILARPDINRAFYGRDVQVAELLGGMEPPPVGATPLYDAI 328
[Close]
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Match: A0A024UDI5_9STRA (FYVE-type domain-containing protein n=3 Tax=Aphanomyces TaxID=100860 RepID=A0A024UDI5_9STRA)

HSP 1 Score: 161 bits (408), Expect = 5.390e-40
Identity = 130/430 (30.23%), Postives = 188/430 (43.72%), Query Frame = 1 
Query:  634 TYVWAEDERASKCCGCARPFDLFCRRHHCFDLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWAHTEDQGIANGDARGCGRIFCAGCSDRRLLVLDP--LSAPGRRPADPRV--PHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEALSRV 1911
            T  W  D   S C  C   FD   R+HHC                                              R CG++FC  C+  R L+ +   L +P +R        P RVC  C+  +LP QA L  + SNA + N ++E     ++  ++P +FTL  EVR++A ++      LE     + + +  P+                               LL  A+GIA L VL+ GFV    +G                      GL +++LPDGSWSAPSA+   G+ WG Q GG VTD++++L+  AA++ F ++ QV++G E G+A G  GR    A+    G +            +YS SKGLF G+S+E  V+ +RP VN  FYG  V A +LL G+   P+AA  LY+AL  V
Sbjct:   34 TIRWISDAEVSLCKSCGLLFDWVRRKHHC----------------------------------------------RYCGQVFCDDCTPHRSLIHEDKILISPNKRYLSVNAFSPQRVCKPCHHILLPDQAILRETASNAVQPNSINETGSKRFF--NSPYSFTLREEVRKAAYSIKNFM--LEG----VIKDQSIPL------------------------------PLLTNAQGIAFLTVLKVGFVVTGRLGT---------------------GLVLSKLPDGSWSAPSAIATAGIGWGAQVGGEVTDFVMILNTRAAVDTFCAQGQVNLGAELGVAAGPVGRVAAGAVEAGPGGIAP--------CYSYSHSKGLFIGISLEGSVIMARPDVNREFYGKDVTAAELLGGRERPPVAAQPLYDALEEV 350
[Close]
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Match: A0A1E7FJS9_9STRA (DUF500-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FJS9_9STRA)

HSP 1 Score: 163 bits (413), Expect = 5.800e-40
Identity = 122/353 (34.56%), Postives = 178/353 (50.42%), Query Frame = 1 
Query:  859 RGCGRIFCAGCSDRRLLVLDPLSAPGRRPADPRVPHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGF-VCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGS-WSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALEL-FQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEALSR 1908
            R CG+IFC  CSD+R LV              R P RVC  CY ++ P Q EL  + SNA R+N +D      +   ++PLAFTLGHEVR++A  L+ L          L +R G  +                           +   LL  A+G+AV+ V +AGF + G  +G                      GL VARL D   WSAP A+ +GG+SWG   G  V+D++ +L  DA++EL F +   + +G + G+A+G  GR  EA  + A G++          +  YS+SKGL+AG+S++ +V+ +R  VNE+FYG +V    +L G++ +P AA  LY+AL R
Sbjct:  124 RLCGKIFCNKCSDQRSLVPPSFQLA-------REPLRVCTVCYEELQPLQEELRTANSNAMRFNHIDPTDPKRF--LNSPLAFTLGHEVRKAAYTLSNLLP--------LPKRMGSMI---------------------------IPARLLEEAKGVAVMTVAKAGFGLAGIEVGT---------------------GLVVARLGDHQQWSAPCAIGVGGISWGALIGAQVSDHVFLLMTDASVELMFNNNGNLQLGADIGVAIGPVGRALEADFAAAPGAMAP--------IYTYSLSKGLYAGISLDGKVIVTRNRVNEKFYGREVTGSQILTGEIPSPPAARPLYDALQR 403
[Close]
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Match: A0A1V9Z795_9STRA (FYVE-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z795_9STRA)

HSP 1 Score: 160 bits (404), Expect = 9.880e-40
Identity = 117/352 (33.24%), Postives = 171/352 (48.58%), Query Frame = 1 
Query:  859 RGCGRIFCAGCSDRRLLVLDP--LSAPGRRPADPRV--PHRVCGRCYRDMLPSQAELIASISNAQRYNPLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRRGEPVACGXXXXXXXXXXAPAADALRADGHALLRGDLLAGARGIAVLGVLRAGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAVWMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGHGRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRPGVNERFYGMQVDAGDLLRGKVTAPLAASALYEAL 1902
            R CG +FC  C++ R L+ +   L++P +R        P RVC  CY  +LP Q+ L  + SNA + N + E     +   ++P +FTL  E+R++A ++                                       D L  D    L   LL  A+GIA L VL+ GFV    +G                      GL +A+LPDG+WSAPSA+   G+ WG Q GGGVTD++++L+  +A++ F ++ QV++G E G+A G  GR    A+    G +            +YS SKGLF G+S+E  +V +RP VN  FYG +V A  LL G+   P+AA  LY+AL
Sbjct:   48 RYCGHVFCDLCTNFRSLIREDKILTSPEKRYLSVNAYNPQRVCEPCYTILLPDQSLLCETSSNAVQPNSITEAGSKRF--LNSPYSFTLREEIRKAAYSVKNFMY----------------------------------DGLIKDQSIPL--PLLTNAKGIAFLTVLKVGFVVTGRVGT---------------------GLVIAKLPDGTWSAPSAIATAGIGWGAQIGGGVTDFVIILNTRSAVDTFCAQGQVNMGAELGVAAGPLGRVAAGAMEAGPGGIAP--------CYSYSHSKGLFIGISIEGSIVVARPDVNMEFYGKEVTAAQLLSGQERRPVAAQPLYDAL 332
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350835 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKQ4_9STRA0.000e+0100.00FYVE-type domain-containing protein n=1 Tax=Tribon... [more]
A0A6H5KXW6_9PHAE6.400e-4735.93FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
K3X8G2_GLOUD4.090e-4230.91FYVE-type domain-containing protein n=1 Tax=Globis... [more]
A0A067CDH3_SAPPC5.730e-4234.56FYVE-type domain-containing protein n=2 Tax=Saprol... [more]
A0A1W0A6W3_9STRA1.330e-4030.54FYVE domain-containing protein n=1 Tax=Thraustothe... [more]
T0R042_SAPDV2.450e-4034.29Ysc84 domain-containing protein n=1 Tax=Saprolegni... [more]
A0A5D6Y5S5_9STRA5.130e-4030.68FYVE-type domain-containing protein n=1 Tax=Pythiu... [more]
A0A024UDI5_9STRA5.390e-4030.23FYVE-type domain-containing protein n=3 Tax=Aphano... [more]
A0A1E7FJS9_9STRA5.800e-4034.56DUF500-domain-containing protein n=1 Tax=Fragilari... [more]
A0A1V9Z795_9STRA9.880e-4033.24FYVE-type domain-containing protein n=1 Tax=Achlya... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_73contigContig_73:671297..679212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350835|estExt_Genemark1.C_Ctg_730067
BRITEko00000,ko04131
KEGG koko:K20523
Descriptionregulation of ruffle assembly
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2930@1|root,KOG1843@2759|Eukaryota
Evalue7.35e-43
Seed ortholog2880.D8LEA9
Hectar predicted targeting categoryother localisation
TranscriptId351157
TrackFilteredModels1
ProteinId350835
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350835gene_12897Tribonema minus UTEX_B_3156 geneContig_73 671297..679212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350835Trimin1|350835|estExt_Genemark1.C_Ctg_730067Tribonema minus UTEX_B_3156 polypeptideContig_73 671297..679212 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12897_16exon_12897_16Tribonema minus UTEX_B_3156 exonContig_73 671297..671449 -
exon_12897_15exon_12897_15Tribonema minus UTEX_B_3156 exonContig_73 671996..672076 -
exon_12897_14exon_12897_14Tribonema minus UTEX_B_3156 exonContig_73 672605..672745 -
exon_12897_13exon_12897_13Tribonema minus UTEX_B_3156 exonContig_73 673544..673706 -
exon_12897_12exon_12897_12Tribonema minus UTEX_B_3156 exonContig_73 673818..673864 -
exon_12897_11exon_12897_11Tribonema minus UTEX_B_3156 exonContig_73 674138..674413 -
exon_12897_10exon_12897_10Tribonema minus UTEX_B_3156 exonContig_73 674854..674967 -
exon_12897_9exon_12897_9Tribonema minus UTEX_B_3156 exonContig_73 675838..675988 -
exon_12897_8exon_12897_8Tribonema minus UTEX_B_3156 exonContig_73 676456..676494 -
exon_12897_7exon_12897_7Tribonema minus UTEX_B_3156 exonContig_73 676880..676978 -
exon_12897_6exon_12897_6Tribonema minus UTEX_B_3156 exonContig_73 677309..677452 -
exon_12897_5exon_12897_5Tribonema minus UTEX_B_3156 exonContig_73 677485..677578 -
exon_12897_4exon_12897_4Tribonema minus UTEX_B_3156 exonContig_73 678021..678071 -
exon_12897_3exon_12897_3Tribonema minus UTEX_B_3156 exonContig_73 678276..678462 -
exon_12897_2exon_12897_2Tribonema minus UTEX_B_3156 exonContig_73 678495..678623 -
exon_12897_1exon_12897_1Tribonema minus UTEX_B_3156 exonContig_73 679099..679212 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12897CDS_12897Tribonema minus UTEX_B_3156 CDSContig_73 679099..679212 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12897 ID=mRNA_12897|Name=jgi.p|Trimin1|350835|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1983bp|location=Sequence derived from alignment at Contig_73:671297..679212- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGTCTGCTGTCGAGGATGGCTCCCTCTATAAATCCTTCAGCAACAC
GAGCAACAAAGGCGTGCAGAGCCCCATCACCCAGAGCCGGCGGAGCTCGT
CTGCGAGCCGCACTGGCTCCTTCTTCGGACCGTCGCCGCTGAACTCGCCG
TCCAGCAGCAGCAGCGGCAGCAGCGACGGCGGCAGCAGCAGCACCACAGA
ACACGGCCTCAGCGCCCACAGCCCCCGCCCCCCCCCCTCCCTGGCCCGCG
GGGGGGGGGGCGGGGGGGGGCGGCGCAAGATGCGGCCGCGCTCGCCGCCG
CCGCTGCGCGCGAAGCGCGAGGGGTACCCGCCGCCGGGGCCGCGGCCGCG
CGCGGGCAGCAGCGGCTCCAGCAGCAGCGACGACAGCCTGGACAAGGGCC
ACAACGCGCTCAACAGCGCGCTCATCAAAGCGACAGTGCTCAACAAGGGG
CACAACGCGCTCAGCAGCGCGCTCATCAAAGGCCAGTGGCTGGCGATGGC
GCGCGAGGCGTCGGGCAGCAGCATCGTGAGCCTGGGGGGGGGGCTATGGC
TGGGGGACAGGGGGCGCTCGTACTCCACGAGCAGCCTCGCGGAGACGGTG
GGGCTGGGGGGGGGGGGGCTCACGCACCTGCGCACGTACGTGTGGGCGGA
GGACGAGAGGGCGTCCAAGTGCTGCGGGTGCGCGCGCCCGTTCGACCTGT
TCTGCCGGCGCCACCACTGTTTTGACCTGCGCACGTACGTGTGGGCGGAG
GACGAGAGGGCGTCCAAGTGCTGCGGGTGCGCGCGCGCGTTCGACCTGTT
CTGCCGGCGCCACCACTGGGCGCACACGGAGGACCAGGGGATTGCCAACG
GCGACGCCCGCGGCTGCGGCCGCATCTTCTGCGCCGGCTGCAGCGACCGC
CGCCTGCTCGTGCTGGACCCTCTCAGCGCGCCGGGGCGGCGGCCTGCGGA
TCCGCGCGTCCCGCACCGCGTGTGCGGGCGCTGCTACCGCGACATGCTGC
CGTCACAGGCGGAGCTCATAGCCTCAATCAGCAACGCTCAGCGCTACAAC
CCCCTGGACGAGCCGGCCGGCGCGCACTGGTGGAAGGCGCACACGCCGCT
GGCGTTCACCCTGGGGCACGAGGTGCGCCGCTCCGCGCGCGCGCTCAACC
GCCTGGCGGCGCGCCTCGAGGCGTCGGCGGCGCGGCTGCAGCGGCGGCGC
GGCGAGCCCGTCGCGTGCGGCTGCGGCGGCGGCGGCAGCGGCGGCGGCGG
CGCGCCCGCGGCGGACGCGCTGCGCGCCGACGGCCACGCGCTGCTGCGCG
GCGACCTGCTCGCCGGCGCGCGCGGCATTGCCGTGCTCGGCGTGCTGCGC
GCGGGCTTCGTGTGCGGCGCGGCGATCGGCAGGCAAGCGAGCGAATTCCA
CATCGCGCTGCACCGCTCGACCGCCGCCGCCACTTCGGCGCGCGCCGGGC
TGTGCGTCGCGCGCCTGCCGGACGGCTCGTGGAGCGCGCCCTCGGCGGTC
TGGATGGGCGGCGTCAGCTGGGGGCTGCAGGGCGGCGGCGGCGTCACCGA
CTACCTGCTCGTGCTGCACAACGACGCGGCGCTGGAGCTGTTCCAGTCGC
GCGACCAGGTCAGCATAGGCGTGGAGGCAGGGCTCGCACTGGGCGGGCAC
GGGCGGCAGACGGAGGCGGCGCTGAGCGTTGCCACGGGGTCGCTCATGCG
TGGGCAGCTGCGGGAGGCGCAGGCGATGACAGCGTACAGCATCAGCAAGG
GCCTTTTTGCGGGGCTGAGCGTTGAGGCGCGTGTGGTGGCGTCGCGCCCC
GGCGTCAACGAGCGCTTCTACGGCATGCAGGTCGACGCCGGCGACCTGCT
GCGCGGCAAGGTCACCGCCCCCCTCGCGGCGAGCGCCCTGTATGAGGCCC
TGAGCCGTGTGGACCGCCTGCTGCACCAGGACCTCTTTGCGCCGCCGCCG
CCGAGTGCGGCGCCGGCGCTGAAGAACGAGTGA
back to top

protein sequence of jgi.p|Trimin1|350835

>Trimin1|350835|estExt_Genemark1.C_Ctg_730067 ID=Trimin1|350835|estExt_Genemark1.C_Ctg_730067|Name=jgi.p|Trimin1|350835|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=661bp
MASAVEDGSLYKSFSNTSNKGVQSPITQSRRSSSASRTGSFFGPSPLNSP
SSSSSGSSDGGSSSTTEHGLSAHSPRPPPSLARGGGGGGGRRKMRPRSPP
PLRAKREGYPPPGPRPRAGSSGSSSSDDSLDKGHNALNSALIKATVLNKG
HNALSSALIKGQWLAMAREASGSSIVSLGGGLWLGDRGRSYSTSSLAETV
GLGGGGLTHLRTYVWAEDERASKCCGCARPFDLFCRRHHCFDLRTYVWAE
DERASKCCGCARAFDLFCRRHHWAHTEDQGIANGDARGCGRIFCAGCSDR
RLLVLDPLSAPGRRPADPRVPHRVCGRCYRDMLPSQAELIASISNAQRYN
PLDEPAGAHWWKAHTPLAFTLGHEVRRSARALNRLAARLEASAARLQRRR
GEPVACGCGGGGSGGGGAPAADALRADGHALLRGDLLAGARGIAVLGVLR
AGFVCGAAIGRQASEFHIALHRSTAAATSARAGLCVARLPDGSWSAPSAV
WMGGVSWGLQGGGGVTDYLLVLHNDAALELFQSRDQVSIGVEAGLALGGH
GRQTEAALSVATGSLMRGQLREAQAMTAYSISKGLFAGLSVEARVVASRP
GVNERFYGMQVDAGDLLRGKVTAPLAASALYEALSRVDRLLHQDLFAPPP
PSAAPALKNE*
back to top

mRNA from alignment at Contig_73:671297..679212-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12897 ID=mRNA_12897|Name=jgi.p|Trimin1|350835|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7916bp|location=Sequence derived from alignment at Contig_73:671297..679212- (Tribonema minus UTEX_B_3156 )
ATGGCGTCTGCTGTCGAGGATGGCTCCCTCTATAAATCCTTCAGCAACAC
GAGCAACAAAGGCGTGCAGAGCCCCATCACCCAGAGCCGGCGGAGCTCGT
CTGCGAGCCGCACTGTGAGTGCTTTGGCCTGGCGTAATGTTGCACACTTG
CGTGCTTGTTCATGCTTTACCGCGCCCATAACGTTCTATACATTTCTGTC
CTGTAAAGACCTAATTTTGGCTGTCACGAAGGAGACGCAGTGGCACAGAC
GTTAAAATATCATCTTGTGTGCTTTTTGTGAAGCAACCAGGCAGCTGCCA
GTACGTACAATCCTCTATGACCGCTGCCCAACGTTTGATACAATGGATTA
CTGCCGTCTTTGAGAGTGTTTGGCTTAGCCGACATGACCCGTTTCATGAC
CCTTGTTCTTTGCGCCAAGTCACACACATGCGCTGCTATTGAACGTGCAC
ACTGAAACGAAGCGTCTGCAAGGCAGAAAGATGCCACCTTCCTTCTATTC
TTTTCCGTGTACCTTATCCCCCCCTTCCCCCCCCCCCCCGCCGCCCCCCC
CCCGCACCCCCACCCCCCCATCCGCTGCGCCCAAAGCAGGGCTCCTTCTT
CGGACCGTCGCCGCTGAACTCGCCGTCCAGCAGCAGCAGCGGCAGCAGCG
ACGGCGGCAGCAGCAGCACCACAGAACACGGCCTCAGCGCCCACAGCCCC
CGCCCCCCCCCCTCCCTGGTGGCCGCGCACGCCCCCTCCTCCTCCAGCAG
GCCCGCGGGGGGGGGGGCGGGGGGGGGCGGCGCAAGATGCGGCCGCGCTC
GCCGCCGCCGCTGCGCGCGAAGCGCGAGGGGTACCCGCCGCCGGGGCCGC
GGCCGCGCGCGGGCAGCAGCGGCTCCAGCAGCAGCGACGACAGCCTGGAC
AAGGGCCACAACGCGCTCAACAGCGCGCTCATCAAAGGTAGGTGCAGATG
GTAGCGCGTCTCTGCACCTACTTCATGCACACAGAGGCTGGAACCCAGGT
TCCCGCTCGTTTACTAGTGAGCAGCAGTGCCCCACAAGGGGCACAACGCG
CTCAACAGCGCACTCATCAAAGGTGCGGATGGTGACGTGTCTGTCTTAAA
CGCAGAGGCTGGAACCCCGGTTCCTGCTCGTTTACTTTGAGCGACAGTGC
TCAACAAGGGGCACAACGCGCTCAGCAGCGCGCTCATCAAAGGTGCGGAT
GGCAGCGCGTCTGTGCACCTGTCTCGAACGCAGAGGCTGGAACCCAGGTT
CCTGCTCGTTTGTTAGTGAGCAGCAGTGCTCAACAAGAGGCACAACGCGC
TCAACGGCGCGCTCATCAAAGGTGCAGATATGGTCGGGGGGGGGGCGGGG
GGGTAGTGTGTGTGCGCGCAGAGGCCGTCTGCAGCGCTTTGCTGCATGCG
ACACACTTTCGGACATCAGCTTCACTGCCTTGACACCTCAAAATTCACTG
CATGCAAACACACCAGACCCCTGGGTACGCTCCGGTCTCAAATGCTGAGG
CTGGAACCCCCGGGCGCCCGCTCGTGCGTACCCATCAGCAGCAGTGCTCA
ACATGAAACCGACATCCGGAAGTCACTCATGCGCGCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCGGCTTGCACTCGCAGGCCAGTGGCTGGCGAT
GGCGCGCGAGGCGTCGGGCAGCAGCATCGTGAGCCTGGGGGGGGGGCTAT
GGCTGGGGGACAGGGGGCGCTCGTACTCGTCCGGGGGGGGCTGCGGCCCT
CGGGGCCGAGCACGAGCAGCCTCGCGGAGACGGTGGGGCTGGGGGGGGGG
GGGCTCACGCACCTGCGCACGTACGTGTGGGCGGAGGACGAGAGGGCGTC
CAAGTGCTGCGGGTGCGCGCGCCCGTTCGACCTGTTCTGCCGGCGCCACC
ACTGGTGAGGCTCTCACACTCACTCTCACTCGTGTAGTTCAAGTTGAGGT
TGGTACTGTTGTCCGAGTGCTTGCGGGTGCGCGCGCCCGTTCGACCTGTT
CTGCCGACGTCACCACTGCTGAGGCGCGGAGCGTGCTCTCACACATGTAC
TTGGAGGTGAGGTCGATGCTGTTGTTGAAGTGTTGACCTGCGCACGTACG
TGTGGGCGGAGAATGATAGGGCGGCCAAGTGCTGCGGATGTGCGCGCCCG
TTCGACCTGTTCTGCCGGCGCCACCACTGGTGAGTGGAGCATACACACGC
GCGTTTACTTTTGAGGTTGATGATGTTGTTGAAGTTTTGACCTGCGCACG
TACGTGTGGGCGGAGGACGAGAGGGCGTCCAAGTGCTGCGGGTGCGCGCG
CGCGTTCGACCTGTTCTGCCGGCGCCACCACTGGTGAGGCTCTCACGCGT
GTACTTCAAGTTGAGGTTGGTGCTGTTGTCCAAGTGCTGCAAGTGCGCGC
GGCCGTTCGACCTGTTCTGCCGCGCCACCACTGGTGAGCGGAGCGCTCGC
GCATGTACTTCAAGTTGATGTTGAAGTTTTGTTGACCTCTGTAGTGTGAA
GGTGGACGGAGCGCTCACGCGTGTACTTAAAGTTCATGGTGTGCTGTCGT
TGTAGTTCCGTAGCGTAACAGTAGATGGAGTGCTCACGCGTGTACTTGAA
ATTGGCGTTGCTGCTGTTGTTGAAGTTTTGTCGAGCAACAGTTGATGTCG
GAGCTGCCGTTCCGTATAGTGTTGGCGGAGGCAGTTGGGCAGCGGTCCTC
GCACACCTGCGCACGCAGGGCGCACACGGAGGACCAGGGGATTGCCAACG
GCGACGCGTGCGATCGTTTGCCCGGTCTGTGCTGCCGACGACACCGCTGG
TCAGCATGTGACGCTGCAGCTGCATTGTAGCCTGCAATACTCCCAAGTAG
AAGCAGCGTTTGAGGCACCATGAACACCTGCTGTGCCAGGCAAGACGGCA
GAAACTGCCTGCGAATACTGTGCACGCGCCCATCCATTTGACGCCCATTT
CCAAATGCTTCACTGCTGACAACTGCTTTGCTACTGACTGAATCACACGG
AGATCGGGCGCTGCTGGTGGAGTCATTTGCGGAGCCGCGTCACGGGTGCT
CCTCACTAACCTCGCGGAAGCGCGCGGCGCATGCGCGCAGCTGCGGCGGC
GGCCTCGCCCTCCATGCCAACCGCCAGCCCCACTCGCGCTACTCAAATGC
ACTGTCGTTACATACAGCAGAAGCAACAAACTTCAAGTGTGACATTTGCG
CTGTGCCGCTGCTTGCTGCTGCAGCCGCGGCTGCGGCCGCATCTTCTGCG
CCGGCTGCAGCGACCGCCGCCTGCTCGTGCTGGACCCTCTCAGCGCGCCG
GGGCGGCGGCCTGCGGATCCGCGCGTCCCGCACCGCGTGTGCGGGCGCTG
CTACCGCGACATGCTGCCGTCACAGGTGCGGTCGGCGCTCCTGCGCGTCG
TTATTATTGTTGGAAACGAATCAGAAGATCGCAGAGCTCTAGGTGACGAG
GGATGGTCAGCCGCCTTATTACTGTTTTGCACCTCCTGTAGGTACAGTAC
TTCGGCGGCGACATGCTGCTGTCACAAGTGCAGTCGGTGCACTGGCGCGT
TGTTTTGACTAGTGTTTTGCACCTGTACTTCGGCATCATGCCGCCATTGC
AGGTGCGGCCGGCGCTCTTGCGCATCATTATCATCAGTTTTCTGTAACCC
ATACTTCAGCGACTTAGGGACGTCACAGGTGCAGCCGCCGCGCTCTTTCT
TGCATTTTGTTGTGTTTTACACCTACTTCAAGTGCATCTACTGCACTGGA
GCTTTGATATCAATCATCTGGGCTTCTTCACGCCCCGAGCGAGAATTGAC
AACAAAGAAATAGAAGTATACTTTAGGGACATGCTGCCGTCGCAGATGCG
GCCATCCGGCTCACGCTCCGAGTTGCTGCACGACTGCCCCCCCCCCCTTG
GGTTAGAGCGGGTGACGTGCTGGATTCGGCGCGTCGGACGTGGCTGATGA
GGGAAGCCCTGCTGCATGTGCTACGTTTGCGCTGATTGCACTGGGCGCCT
CTCCTGCATCTATCAGTTGAGGTACACGCGATGCCCCTTGGCACCGGTAC
TTTCGCAGCGGCTGCAAAGCCAGACTGCGCGTTGGCACACCCTTACATGA
CGCAGTTGAAGTAGCGATGCCCCTCGCCAGCAGCGTTCGCAGCACCGTCG
AGACCGCAGTCGCGAGTTTCGTCGCGCTCTCGTGGACGGCGCCCTGCTCT
GACCATACCTACATACCCTTTAGCCCCCCCCCCCCCCCCCCGCAGGCGGA
GCTCATAGCCTCAATCAGCAACGCTCAGCGCTACAACCCCCTGGACGAGC
CGGCCGGCGCGCACTGGTGGAAGGCGCACACGCCGCTGGCGTTCACCCTG
GGGCACGAGGTGCGCATGCCTTCTAATATAATGTACTATTATTGAAATCA
CAACAATACATGCAGCGGCGACCACGGTCATTGGTGGAAGCTACTTCAGC
TAACCACACCTTGCCACCTAGAGCTCTACTATCTTGTGGTTTGTTTCCGA
TCATAGTATCCTATGCGTCCTTGCCGCCCTACGCGGGCGGGCCTCATGGG
CGCTGCCGACCGGTTTTGTGAGCTGCTGATGCCAGACGGCCTTAGCGTGT
CGCGCCTCCGCATTGCCCCATTGTGTGCGGCCGTCGGCGGGCCCCCCGCC
GCGTCGCTCCCGGCACATGAACTTCACGCACTTCCCTCACTATCAACCAC
TGCGTCAGCGTCGACGAGCGAAGCCAGACCCCAGCCGCTGACCTCACGCC
GCCGACGATGCACGCGCTGCCGCCGCCGCCGCCGCCGCTGCCGCCACAGG
TGCGCCGCTCCGCGCGCGCGCTCAACCGCCTGGCGGCGCGCCTCGAGGCG
TCGGCGGCGCGGCTGCAGCGGCGGCGCGGCGAGCCCGTCGCGTGCGGCTG
CGGCGGCGGCGGCAGCGGCGGCGGCGGCGCGCCCGCGGCGGACGCGCTGC
GCGCCGACGGCCACGCGCTGCTGCGCGGCGACCTGCTCGCCGGCGCGCGC
GGCATTGCCGTGCTCGGCGTGCTGCGCGCGGGCTTCGTGTGCGGCGCGGC
GATCGGCAGGCAAGCGAGCGAATTCGTGCTGTGCGGGGAGTGTAGGTGTT
GCCCGGCGGCTGCGGCAGGACCGCGCACGCGTGCGGGCGCCGCCAGCGCT
GCACGCGTCGTGATTGCGAGCACCGCACGCAGATCACCTTCTGCAACATG
CTCGTGCCTCGCATTGCCGCCCGCTGATCCCGAGCGCTACGCCCCCTGCG
CAAACATAGTTTCCAACGGCACAGCCCGCTCTCTGCGTCGCGCGGAGCGC
GCACGCGTCGCTGTCACAACCCCCCCCCCCCCCCACCCCCGTGCTTAGCA
CATCGCGCTGCACCGCTCGACCGCCGCCGCCACTTCGGCGCGCGCGTCGC
GTGGCCTCCAGACGGCTGCACGCGTCGCTGTCGCAACCACGCCTCAGCGC
TCACCTCATGCGCGCCGCGCTGTCGTCCGTCGTCGCTGCGCCGCCCGTCG
CCGCAGCGGGCTGTGCGTCGCGCGCCTGCCGGACGGCTCGTGGAGCGCGC
CCTCGGCGGTCTGGATGGGCGGCGTCAGCTGGGGGCTGCAGGGCGGCGGC
GGCGTCACCGACTACCTGCTCGTGCTGCACAACGACGCGGCGCTGGAGCT
GTTCCAGTCGCGCGACCAGGTGAGCGCTGAGCGCTGCCGCCGCCGCCGGC
AGCAGTGCTCAGCAAGAGGCAGGCGCACGCGCGCTCGCTGCGCGACGCTG
CGCGCCTGCCGCTGGCTGTAAGTCCGCAGTTCCCAGCACCAGGGGATTGC
ATGCAGGCCTGCTGCGGGACGTGCTGGGTGTGTGGCCTGCCGCCTGGCAG
TGAGTCCGCAGTTCGGAGCAAAAAGAACTTACTTCGTAGTTGCCTTTAAG
CTCGCTGTGTGGCGCGCTCCTAGCGCGGGCTGCGTGTGTTCCTCAGAATG
CGGCGCAACGGTCGCGAGCACGACGCCTTGCACTGACTGCGGAGCCCCTG
CCGGCAGCAGCGGCGCTCCGCTGATGTTGCAGCGCCGCGGCTGGCTGCGG
AGCTGAACGTACAGTAGTTCAGAGGTGCGCAGCAGAGTTTGTGCGTACTG
CGGCAAGGGCGGGGCAGAGTTCATGTGTACTGTGTGGCGTGCACGAAGGC
GCTCAGCGCCTGCTCTTGCTGCACAACATCTGGCGCTGCGACGCTTCCTT
CGGTTCACAATTGCATCACAACGGGTGTCGTGTACCTGGAAACGGTGCCT
GGCAGTAGGTTGAAAGATAAGCACCCCTTCTTTCGATCATGACACAGGCG
CAGCAGCGGGGCTTGCGCCAAGAAACGGCCGTCGGCGGCAGCGGCACTGT
CATCCAAGTTAGGGTTAAACCCTAGTGTTTGGGCTGAACCCTCGGTTGAG
GGCTGAACGCAAAGGATGGCGGTGACTCTCACCCCCCCTGCCCCATCCAT
CGTCCCCCGTCATGCAGGTCAGCATAGGCGTGGAGGCAGGGCTCGCACTG
GGCGGGCACGGGCGGCAGACGGAGGCGGCGCTGAGCGTTGCCACGGGGTC
GCTCATGCGTGGGCAGCTGCGGGAGGCGCAGGCGATGACAGCGTACAGCA
TCAGCAAGGTGCGTACTTCCATTCAAGTCCATTTGTGGCTGTGGAATGCC
ATGCTGTGTGGTGTTTCTCCTTGTGCTCACTTTTGAATGTAGCATGCAAA
GCTTCACTCACTACAACGCACCCGCAAGCGACTGTCCCACATATGCTACT
TCAAGCTGAAGTACACATACTTCACAAGGAGCATCACACTTCAGTACAGT
CGCCGGGGAATCAGCCAGTTGCCATAGCATGTCGCGACTGGTTTCATGGC
TCGAGGGCCAGGCCAAGAAAGGGGGGGGGAGGGAGGGGGCATGTGGTGCT
TCGTCAACTGGTGCGGCGCGCGGCCATGCGAGCCTGCATACGCATGCAGA
TGTTCGATGATCGCCCTCTGCGCCTCGGCCTTTCTGCTGGCGCATCGCTG
CTGCTTCCACAGCTGCAGCAGGTTGACACTGTACTTTTCTTCTAGTAGTA
CGCTGTCGGCTTGGCTCACGCTGCTGCGTCTCGCCGTGCGTGCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCTGCGCGCGCGCGCAGGGCCTTTTTGCGGG
GCTGAGCGTTGAGGCGCGTGTGGTGGCGTCGCGCCCCGGCGTCAACGAGC
GCTTCTACGGCATGCAGGTGAGCCCGGGCAACTTCAACCCTAACCCTAAT
GCTCAGCTAACCTACATCTAACCCCGTCCCCCGCCCAAACCCTAATCGTC
AGCTGACGCTAACCCTAATCCCGTTCCGTTCAAATGGGCGCTGCTGCTGA
TTGGGTGGAGCGCGCCGCTCTGCTGCTTGCGCGTCGTCGGCTGCTGTCGG
CATGCAGCCGCTTAGTTTCTGCAAGATAGATTTAGGGCTGGGCTGGCATC
AGGCAGGGCTAGGGTATGGGTGAGATGAGCTCGACAGAAGAGGTCGAACG
CGGCATCAGCATCGTGACGATACTGCTGGCGCACCCTGCTCATTTGACAG
ACGTGAATGCCCACCAATTCAATGTGGAACCTCAATACGCGGCGTGAACT
GGAGCGCTGCCTCGCTGGCATCCACGACGCTGCTGACGCACCTCGATCAT
TCATAGTGATTGTTCCCCCACAACTTCGATGTGCAACCTCAACAAAACTT
CAATGTGCAACCTCAAACACAAGGAAAGCGGAGCGCTGCCTTGCTGTCAT
CCACAACGCTCAGGTCGACGCCGGCGACCTGCTGCGCGGCAAGGTCACCG
CCCCCCTCGCGGCGAGCGCCCTGTATGAGGCCCTGAGCCGTGTGGACCGC
CTGCTGCACCAGGACCTCTTTGCGCCGCCGCCGCCGAGTGCGGCGCCGGC
GCTGAAGAACGAGTGA
back to top

Coding sequence (CDS) from alignment at Contig_73:671297..679212-

>mRNA_12897 ID=mRNA_12897|Name=jgi.p|Trimin1|350835|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1983bp|location=Sequence derived from alignment at Contig_73:671297..679212- (Tribonema minus UTEX_B_3156 )
ATGGCGTCTGCTGTCGAGGATGGCTCCCTCTATAAATCCTTCAGCAACAC
GAGCAACAAAGGCGTGCAGAGCCCCATCACCCAGAGCCGGCGGAGCTCGT
CTGCGAGCCGCACTGGCTCCTTCTTCGGACCGTCGCCGCTGAACTCGCCG
TCCAGCAGCAGCAGCGGCAGCAGCGACGGCGGCAGCAGCAGCACCACAGA
ACACGGCCTCAGCGCCCACAGCCCCCGCCCCCCCCCCTCCCTGGCCCGCG
GGGGGGGGGGCGGGGGGGGGCGGCGCAAGATGCGGCCGCGCTCGCCGCCG
CCGCTGCGCGCGAAGCGCGAGGGGTACCCGCCGCCGGGGCCGCGGCCGCG
CGCGGGCAGCAGCGGCTCCAGCAGCAGCGACGACAGCCTGGACAAGGGCC
ACAACGCGCTCAACAGCGCGCTCATCAAAGCGACAGTGCTCAACAAGGGG
CACAACGCGCTCAGCAGCGCGCTCATCAAAGGCCAGTGGCTGGCGATGGC
GCGCGAGGCGTCGGGCAGCAGCATCGTGAGCCTGGGGGGGGGGCTATGGC
TGGGGGACAGGGGGCGCTCGTACTCCACGAGCAGCCTCGCGGAGACGGTG
GGGCTGGGGGGGGGGGGGCTCACGCACCTGCGCACGTACGTGTGGGCGGA
GGACGAGAGGGCGTCCAAGTGCTGCGGGTGCGCGCGCCCGTTCGACCTGT
TCTGCCGGCGCCACCACTGTTTTGACCTGCGCACGTACGTGTGGGCGGAG
GACGAGAGGGCGTCCAAGTGCTGCGGGTGCGCGCGCGCGTTCGACCTGTT
CTGCCGGCGCCACCACTGGGCGCACACGGAGGACCAGGGGATTGCCAACG
GCGACGCCCGCGGCTGCGGCCGCATCTTCTGCGCCGGCTGCAGCGACCGC
CGCCTGCTCGTGCTGGACCCTCTCAGCGCGCCGGGGCGGCGGCCTGCGGA
TCCGCGCGTCCCGCACCGCGTGTGCGGGCGCTGCTACCGCGACATGCTGC
CGTCACAGGCGGAGCTCATAGCCTCAATCAGCAACGCTCAGCGCTACAAC
CCCCTGGACGAGCCGGCCGGCGCGCACTGGTGGAAGGCGCACACGCCGCT
GGCGTTCACCCTGGGGCACGAGGTGCGCCGCTCCGCGCGCGCGCTCAACC
GCCTGGCGGCGCGCCTCGAGGCGTCGGCGGCGCGGCTGCAGCGGCGGCGC
GGCGAGCCCGTCGCGTGCGGCTGCGGCGGCGGCGGCAGCGGCGGCGGCGG
CGCGCCCGCGGCGGACGCGCTGCGCGCCGACGGCCACGCGCTGCTGCGCG
GCGACCTGCTCGCCGGCGCGCGCGGCATTGCCGTGCTCGGCGTGCTGCGC
GCGGGCTTCGTGTGCGGCGCGGCGATCGGCAGGCAAGCGAGCGAATTCCA
CATCGCGCTGCACCGCTCGACCGCCGCCGCCACTTCGGCGCGCGCCGGGC
TGTGCGTCGCGCGCCTGCCGGACGGCTCGTGGAGCGCGCCCTCGGCGGTC
TGGATGGGCGGCGTCAGCTGGGGGCTGCAGGGCGGCGGCGGCGTCACCGA
CTACCTGCTCGTGCTGCACAACGACGCGGCGCTGGAGCTGTTCCAGTCGC
GCGACCAGGTCAGCATAGGCGTGGAGGCAGGGCTCGCACTGGGCGGGCAC
GGGCGGCAGACGGAGGCGGCGCTGAGCGTTGCCACGGGGTCGCTCATGCG
TGGGCAGCTGCGGGAGGCGCAGGCGATGACAGCGTACAGCATCAGCAAGG
GCCTTTTTGCGGGGCTGAGCGTTGAGGCGCGTGTGGTGGCGTCGCGCCCC
GGCGTCAACGAGCGCTTCTACGGCATGCAGGTCGACGCCGGCGACCTGCT
GCGCGGCAAGGTCACCGCCCCCCTCGCGGCGAGCGCCCTGTATGAGGCCC
TGAGCCGTGTGGACCGCCTGCTGCACCAGGACCTCTTTGCGCCGCCGCCG
CCGAGTGCGGCGCCGGCGCTGAAGAACGAGTGA
back to top