mRNA_12842 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350806
Unique NamemRNA_12842
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Match: A0A836C9R8_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9R8_9STRA)

HSP 1 Score: 1005 bits (2598), Expect = 0.000e+0
Identity = 516/516 (100.00%), Postives = 516/516 (100.00%), Query Frame = 2 
Query:   23 MKLAIVAALLASAVAVLGDGNTQQEWVALVSKHASLGSKISAGALSEYTTTMKKAIRATGADITSYHPEIGMATIIGPAQSITSVKKMADVVGVFRSVKRRFIPEADKLLGGAAGGRRLHEDHDTLVDAARSAAARLLPAFKEPDYRPLQWSRKAIGADRALNAGLKGKGATVAVLDTGFYLDHPAIKRYDQSLSYNFIVDEQLAFNYTLANNPGDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSDMGFGYDPQVVGGILYAVAAGVDIISMSLGSLSNVTGSPEDGYTASDVSMWIQMYNRVFSFAHDRGVTVVVAGGNDAVQMDTQTDLFAFFAENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTGSAIDFSAPGGNNMAVNRTAGATQETCSYTLNTGVFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDLKF 1570
            MKLAIVAALLASAVAVLGDGNTQQEWVALVSKHASLGSKISAGALSEYTTTMKKAIRATGADITSYHPEIGMATIIGPAQSITSVKKMADVVGVFRSVKRRFIPEADKLLGGAAGGRRLHEDHDTLVDAARSAAARLLPAFKEPDYRPLQWSRKAIGADRALNAGLKGKGATVAVLDTGFYLDHPAIKRYDQSLSYNFIVDEQLAFNYTLANNPGDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSDMGFGYDPQVVGGILYAVAAGVDIISMSLGSLSNVTGSPEDGYTASDVSMWIQMYNRVFSFAHDRGVTVVVAGGNDAVQMDTQTDLFAFFAENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTGSAIDFSAPGGNNMAVNRTAGATQETCSYTLNTGVFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDLKF
Sbjct:    1 MKLAIVAALLASAVAVLGDGNTQQEWVALVSKHASLGSKISAGALSEYTTTMKKAIRATGADITSYHPEIGMATIIGPAQSITSVKKMADVVGVFRSVKRRFIPEADKLLGGAAGGRRLHEDHDTLVDAARSAAARLLPAFKEPDYRPLQWSRKAIGADRALNAGLKGKGATVAVLDTGFYLDHPAIKRYDQSLSYNFIVDEQLAFNYTLANNPGDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSDMGFGYDPQVVGGILYAVAAGVDIISMSLGSLSNVTGSPEDGYTASDVSMWIQMYNRVFSFAHDRGVTVVVAGGNDAVQMDTQTDLFAFFAENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTGSAIDFSAPGGNNMAVNRTAGATQETCSYTLNTGVFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDLKF 516
[Close]
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Match: A0A835YY96_9STRA (Subtilisin n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY96_9STRA)

HSP 1 Score: 778 bits (2010), Expect = 1.580e-276
Identity = 423/529 (79.96%), Postives = 455/529 (86.01%), Query Frame = 2 
Query:   23 MKLAIVAALLASAVAVLGDGNTQ--QEWVALVSKHASLGSKISAGALSEYTTTMKKAIRATGADITSYHPEIGMATIIGPAQSITSVKKMADVVGVFRSVKRRFIPEADKLLGGAAGGRRLHEDHDTLVDAA--RSAAARLLPA--FKEPDYRPLQWSRKAIGADRALNAGLKGKGATVAVLDTGFYLDHPAIKRYDQSLSYNFIVDEQLAFNYTLANNPGDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSDMGFGYDPQVVGGILYAVAAGVDIISMSLGSLSNVTGSP-------EDGYTASDVSMWIQMYNRVFSFAHDRGVTVVVAGGNDAVQMDTQTDLFAFFAENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTGSAIDFSAPGGNNMAVNRTAGATQETCSYTLNTGVFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDLKF 1570
            M+ +IVAALLAS VAVLGD +TQ  QEWVAL SKHASLGS I+A AL EYTTTMK AIRATGADIT YHPEIGMATI GPAQSITS+KKMA V GVFRSV+RRFIP  D++LGG AG RRL E+H+T VDAA  RSAAAR LPA  F+EPD+RPLQWSR AI ADRALNAGLKGKGATVAVLDT FYLDHPAIK YDQSLS NFI  EQLAFNYTLAN+P  LDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKV+SD G+G D QVV GILYAVA GVDIISMS+GSL++VTG+P       +D YTASD  MWIQMYNRV  FAH  GVTVVVA GNDAVQ+D QTDLFAFFAENKWTISVAATGPTFWAKDPK+AKL GSSS+TNTGSAI+FSAPGGN+ A +  A   Q TCSYTLNTGVFST CYRFDYVLSAALS + L S  RYG+PTRYAFV GTSMATPHVAGVAALIRGKKKGRIS DQM EYLK+CS DLGDKGKDPIYG+GL+SASKV+DLKF
Sbjct:    1 MRSSIVAALLASVVAVLGD-DTQLLQEWVALFSKHASLGSAIAASALGEYTTTMKHAIRATGADITFYHPEIGMATITGPAQSITSIKKMAGVKGVFRSVQRRFIPAPDEILGGPAG-RRLQENHNTRVDAAIRRSAAARSLPAAAFQEPDFRPLQWSRLAIDADRALNAGLKGKGATVAVLDTVFYLDHPAIKHYDQSLSCNFIEHEQLAFNYTLANDPDLLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVISDTGYGSDAQVVAGILYAVAVGVDIISMSIGSLASVTGAPHDPQTDIDDSYTASDARMWIQMYNRVVLFAHASGVTVVVAAGNDAVQLDKQTDLFAFFAENKWTISVAATGPTFWAKDPKHAKLTGSSSHTNTGSAINFSAPGGNDEAYDFNANI-QATCSYTLNTGVFSTYCYRFDYVLSAALSPDTLVSKLRYGMPTRYAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDLKF 526
[Close]
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Match: A0A836C9E9_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9E9_9STRA)

HSP 1 Score: 380 bits (975), Expect = 1.290e-119
Identity = 248/587 (42.25%), Postives = 329/587 (56.05%), Query Frame = 2 
Query:   20 AMKLAIVAALLASAVAVLGDGNTQQEWVALVSKHASLGSKISAGALSEYTTTMKKAIRATGADITSYHPEIGMATIIGPAQSITSVKKMADVVGVFRSVKRRFIPEADKLLGGAAGGRRLH---------------EDHDTLV--DAARSAAARLLPAFKEPDYRPLQWSRKAIGADRALNAGLKGKGATVAVLDTGFYLDHPAIKRYDQSLSYNFIVDEQLAFNYTLANNPGDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSDMGFGYDPQVVG---------------------------------------------GILYAVAAGVDIISMSLGSLSNVTGSPED-------GYTASDVSMWIQMYNRVFSFAHDRGVTVVVAGGNDAVQMDTQTDLFAFFAENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTGS--AIDFSAPGGNNMAVNRTAGATQETCSYTLNTGVFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDLK 1567
            A+ L +VA   A   A L D +T+QEW+A++         +SA AL+ +T  M   I ATGA +    PEIGM  ++G  +S +SV++M  V  V  S+ RRF+PE      G    R LH               ++H+     DA R  AA+     KEP+YRPLQWSR AI A RA  AG+KGKGA VAVLDTGFYLDHPA+K Y++ LS + +  E+L F+   AN+   LD SHGTHTAS + GADL G GT+GVAPEA+LVL+KVL D G G D +++                                              GILYA+  GVD++SMSL  +++  G+ +D        Y+AS +   I++Y RVF  A++  VTVVV+  ND      QT L++F A    TI V ATGP ++AK+ K + L+  S Y++ G    IDF+APGG   A+++     +E C Y L        C  +D+V+ A  S +A F+   YG  TRY +  G SMATPHVAGVAALI GKK  R+  DQM +YLKQCS D+G KGKD  +G+G I+A KVVDLK
Sbjct:    9 ALALVVVALFSAPGAAAL-DSSTEQEWIAVLEMDTH-DRHLSAAALNTHTALMTANI-ATGAAVIRSVPEIGMVVLVGSPESASSVQQMQGVESVIPSLTRRFLPEDP---AGIRASRELHGMPVYDDAQTDEPDTQEHEQSAGDDANRELAAK--KKLKEPNYRPLQWSRTAIKATRAAKAGIKGKGARVAVLDTGFYLDHPALKHYNKKLSKSMVKGEKLQFSAKAANDRFFLDASHGTHTASILGGADLKGVGTVGVAPEADLVLIKVLYDSGRGSDRELIEVRHQLVATVVDYAQVTSDVEATARRSADSSCAFAAQTYEIEAAMLGILYAIDVGVDVMSMSLSFVADRRGAKDDPNTPQDDSYSASYIKQLIKLYTRVFKIAYNNDVTVVVSIDNDGHNYTKQTKLYSFHAALPHTIGVTATGPVYFAKNQKTS-LDKPSGYSSFGGRDVIDFAAPGGTETALHKKP---KERCKYKLGKRTLEMPCAYYDWVIGAIGSADATFAKREYGFATRYGWFPGNSMATPHVAGVAALITGKKGKRVPPDQMFKYLKQCSDDIGAKGKDQRFGYGRINAGKVVDLK 583
[Close]
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Match: A0A835YQX2_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQX2_9STRA)

HSP 1 Score: 346 bits (887), Expect = 3.000e-103
Identity = 205/433 (47.34%), Postives = 270/433 (62.36%), Query Frame = 2 
Query:  317 KRRFIPEADKLLGGAAGGRRLHEDHDTLVDAARSAAARLLPAFKEPDYRPLQWSRKAIGADRALNAGLKGKG---ATVAVLDTGFYLDHPAIKRYDQSLSYNFIVDEQLAFNYTLANNPGDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSDMGFGYDPQVVGGILYAVAAGVDIISMSLGSLSNVTGSP--------EDGYTASDVSMWIQMYNRVFSFAHDRGVTVVVAGGNDAVQMDTQTD-LFAFFAENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTGSAIDFSAPGGNNMAVNRTAGAT---QETCSYTLNTGVFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDLKF 1570
            +R  I ++D    GA G  R H +             R L   +EP++R LQW R AI A RA  AG++G G   A VA+LDTGF+LDHP+IK Y+++LS+NF+  E L FN  L  +P   DFSHGTHT+S + GADLGG GT+GVAPEA L+L+KVLS+ GFG D  ++  I YA   GVDI+S+SLG + +  G          +D YTA D +  I++Y+ +  +A +R  T++VA GNDA +MD     L+  FA+    I+V+ATGPTF+ ++ K   L+  + Y+N+GS +DF+APGG+    N    AT   +   S+TL        C RFDYV SA  SK A+++   YG  +RYA+ AGTSMATPHVAGVAALI  K   R S  Q+ EYLKQCS D+G KGKD  +G G ISA KVVDLKF
Sbjct:  483 QRDLITDSDAAFVGAKGVARHHGE------------VRKLSVSQEPNFRSLQWGRTAIDAGRAFKAGVRGGGKRPARVAILDTGFWLDHPSIKHYNKTLSFNFVPGETLNFNLKL--DPSGSDFSHGTHTSSLMGGADLGGSGTLGVAPEAELILLKVLSERGFGDDWGIISAIKYAADNGVDILSLSLGGVLDRRGVKIDDPTTYYDDRYTAEDAAAIIEVYSSITKYAAERDATLIVAAGNDAAKMDADKPYLYRIFADVPRVIAVSATGPTFFGRNRKT-DLDKFAYYSNSGSQVDFAAPGGSFRVANTDLNATCTVRVDDSFTLQ----KFPCRRFDYVFSACCSKRAIYTQTYYGFESRYAWAAGTSMATPHVAGVAALIVAKHGKRTSPAQLLEYLKQCSDDIGAKGKDDYFGFGRISAGKVVDLKF 896
[Close]
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Match: A0A835ZEI7_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI7_9STRA)

HSP 1 Score: 334 bits (856), Expect = 2.580e-102
Identity = 210/460 (45.65%), Postives = 278/460 (60.43%), Query Frame = 2 
Query:  224 PEIGMATIIGPAQSITSVKKMA--DVVGVFRSVKRRFIPEADKLLGGAAGGRRLHEDHDTLVDAARSAAARLLPAFKEPDYRPLQWSRKAIGADRALNAGLKGKG---ATVAVLDTGFYLDHPAIKRYDQSLSYNFIVDEQLAFNYTLANNPGD--LDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSD-MGFGYDPQVVGGILYAVAAGVDIISMSLGSLSNVTGSPEDGYTASDVSMWIQMYNRVFSFAHDRGVTVVVAGG--NDAVQMDTQTDLFAFFAENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTGS-AIDFSAPGGNNMAVNRTAGATQETCSYTLNTGV-FSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDLK 1567
            P+IG+  + GP  S  ++KK A  +V  V  S    F+ +A  L    A  R +  + ++   +   +  R      EPD  PLQWSRKAI  DRA  AGLKG G   A VA++D GF+LDHPAI RY++ LS+NF+  E+L FN  L        LD SHGTHTAS V GADLGG+GTIGVAPEA LVL+KVLS+  G GYD  ++  I+YA     DII+MSLG   ++ G  E  YTA+DV    +++++    A++ GVT+V A G  + ++ MD  + L  F     + + V+ATGP FW +D ++  L+  + Y+  GS  IDF+APGGN   +     A    CSY LN       +C RFDYV+SA    +ALF +  YG  TRY ++AGTSMA+PHVAGVAALI GK   R+   ++  YLKQC+ D+GD GKD  YG G I+A KVVDLK
Sbjct:   86 PKIGVIVVDGPPNSAANIKKAAGPNVEAVVPS----FVFKAPALAFEPASRREIATNINSAEKSKSESNLRGKRVLVEPDLTPLQWSRKAIKVDRAAKAGLKGGGKRPARVAIIDGGFWLDHPAIARYNRELSFNFVPREKLMFNPALTEGGTGKGLDLSHGTHTASIVGGADLGGQGTIGVAPEAELVLLKVLSEETGSGYDYNILAAIIYATTIKADIINMSLGVTLDMRGV-EGEYTAADVQYTKRIWSQAVKDAYNSGVTIVGAAGEGDKSINMDKASYLVDFPTSVPYVVGVSATGPVFWGRD-QSTPLDKLAVYSYYGSKVIDFAAPGGNTKVLVTHPNAQ---CSYKLNAETTVDLACRRFDYVVSACCGPQALFPLDAYGFKTRYGWLAGTSMASPHVAGVAALIVGKAGRRVPPQELLGYLKQCTNDIGDAGKDAKYGFGRINAGKVVDLK 536
[Close]
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Match: A0A835ZJE0_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJE0_9STRA)

HSP 1 Score: 310 bits (795), Expect = 4.650e-96
Identity = 183/388 (47.16%), Postives = 236/388 (60.82%), Query Frame = 2 
Query:  434 LPAFKEPDYRPLQWSRKAIGADRALNAGLKGKG---ATVAVLDTGFYLDHPAIKRYDQSLSYNFIVDEQLAFNYTLANNP--GDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSDMGFGYDPQVVGGILYAVAAGVDIISMSLGSLSNVTGSPEDGYTASDVSMWIQMYNRVFSFAHDRGVTVVVAGGNDAVQMDTQTDLFAFF-AENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTGSAIDFSAPGGNNMAVNRTAGAT---QETCSYTLNTGVFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDLKF 1570
            +    EPD+R LQW R AI ADRA NAG+KG G   A VA++D GF+LDHP+IK Y++ LS+NF+  E+L FN  + N+P  G  DFSHGTHTAS + GADLG  GT+GVAP+A L+L+KVLSD G G D  V+  I YA    VDI+S+SLG                                 D+  T++ A GN A  MD     F +  A+    I V+ATGPTFW ++ K   L+  + Y+N+GS IDF+APGG+    N    AT   +   S+T+        C R DYV+SA  S++ALF+  +YG  +RYA+V+GTSMA PHVAGVAALI  K+    S  Q+ +YLKQCS DLG KGKD ++G G I+A KVVDLKF
Sbjct:    1 MSVVNEPDFRRLQWGRTAIKADRAFNAGVKGGGKRPARVAIVDGGFWLDHPSIKHYNKKLSFNFVAGEKLNFNTEIGNDPTTGSFDFSHGTHTASIMGGADLGRSGTLGVAPKAELILLKVLSDSGHGDDWPVISAIKYAADNNVDILSLSLG---------------------------------DKKTTLIAAAGNSATNMDKDKPYFFWLLADLPHVIPVSATGPTFWGRNHKT-DLDEFAYYSNSGSQIDFAAPGGSLKVANTKPDATCTVRVDASFTIK----DFPCRRLDYVISACCSEKALFTKAQYGYKSRYAWVSGTSMAAPHVAGVAALIVAKRGKPTSPAQLLKYLKQCSDDLGTKGKDDLFGFGRINAGKVVDLKF 350
[Close]
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Match: A0A835YSW5_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSW5_9STRA)

HSP 1 Score: 317 bits (811), Expect = 1.510e-95
Identity = 218/548 (39.78%), Postives = 290/548 (52.92%), Query Frame = 2 
Query:  107 LVSKHA--SLGSKISAGALSEYTTTMKKAIRAT-GADITSYHPEIGMATIIGPAQSITSVKKMADV-------VGVFRSVKRRFIPEADKLLGGAAGGRRLHEDHDTLVDAARSA-AARLLPAFKEPDYRPLQWSRKAIGADRALNAGLKGKG---ATVAVLDTGFYLDHPAIKRYDQSLSYNFIVDEQLAFNYTLANNPGDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSDMGFGYDPQVVGGILYAVAAGVDIISMSLGSLSNVTGSPEDGYTASDVSM-------WIQMYNRVFSFAHDR------------------------------------GVTVVVAGGNDAVQMD-TQTDLFAFFAENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTGSAIDFSAPGGNNMAVNRTAGATQETCSYTLNTG--VFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDLKF 1570
            L+  HA  S+GS +   A+++ T    +A+ A  G ++ S  PEIG+  I GP  S   +K+             VF S   R +P +   + G   G  L        + +R     R L    EPDYRPLQWSR A+ ADRA NAGLKG G   A VAV+D GF+LDHP+I  Y++ LS+NF+  E+L FN        D D SHGTHT+S +AG DL G GT+G+APEA+LVL+K LSD G+G D  V+  I YAV  GVDIIS+SLG + +  G  +D YT  D S+       +I M+  +  +A+ +                                    GVT++ + GND   +D T  +     A+    I+V+ATGP FW +D         + Y+N G+ ID +APGGN  A  R   AT   C   L  G       CY FD VLSA  S  A F   +Y   TRYA++AGTSMA PH AGVAALI  K+  R++ D++  YL+QC+ D G  GKD  +G+G +SA KVVDL F
Sbjct:   38 LLYSHAAGSVGS-VGIAAMTDATQAAAQALDAIYGVNVRSAIPEIGVVFISGPPNSAAIIKRRVGQRVKAVLPTMVFSSPVVRPVPSS--FINGTGSGASLVSS-----EGSRDGNPGRTLSVVDEPDYRPLQWSRVAMDADRAFNAGLKGGGKRPARVAVIDEGFWLDHPSIAHYNKELSFNFVPGEELMFN---PKRSSDRDLSHGTHTSSILAGRDLSGHGTLGIAPEADLVLLKGLSDGGYGEDLGVMTAIKYAVEKGVDIISLSLGGVVDRRGQEDDPYTDYDESLTPEEAAAYIDMWTAITGYAYRKATTICRLADCAGCKLAKANTHPPXXXXXXXXKLDLKGVTIIASAGNDRADLDKTNPNKVYILADLPHVIAVSATGPIFWGRDQATNLDRFVTGYSNYGAPIDLAAPGGNIAAAYRDFNAT---CRVPLGEGRAALELRCYEFDAVLSACCSASATFPRAQYRRATRYAWLAGTSMAAPHAAGVAALIVAKRGARVAPDKLFAYLQQCADDRGLAGKDRRFGYGRVSAGKVVDLVF 571
[Close]
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Match: A0A836CK69_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK69_9STRA)

HSP 1 Score: 293 bits (750), Expect = 3.460e-89
Identity = 178/368 (48.37%), Postives = 227/368 (61.68%), Query Frame = 2 
Query:  497 DRALNAGLKGKG---ATVAVLDTGFYLDHPAIKRYDQSLSYNFIVDEQLAFNYTLANNPGDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSDMGFGYDPQVVGGILYAVAAGV--DIISMSLGSLSNVTGSPEDGYTASDVSMWIQMYNRVFSFAHDRGVTVVVAGGND---AVQMDTQTDLFAFFAENKW--TISVAATGPTFWAKDPKNAKLNGSSSYTNTGSAI-DFSAPGGNNMAVNRTAGATQETCSYTLNTGV-FSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDL 1564
            DRA  AGLKG G   A VAV+DTGF+LDHP+I  Y++ LS+NF+  E+L FN  L   P   D SHGTHT+S + GADLGGKGTIGVAP+A+LVL+KVL D G+G D  ++  I YA +  V  DII++SLG   N  G P   YTA+D    I+M+ R   +A+ +G TV+ A G D    + +D + +L            I V+ATGP FW +D K   L+  + Y+  GS I DF+APGGN        GA    C+Y L +    S +C  FDYVLSA  SK+ LF    +   TRY ++AGTSMA PHVAGVAALI GK   R+S D +  +LK C+ DLG  GKD  YG+G I+A KVVDL
Sbjct:    4 DRAFKAGLKGGGRMPARVAVIDTGFWLDHPSIAHYNKKLSFNFVPGEKLMFNTNLT--PDGSDLSHGTHTSSIIGGADLGGKGTIGVAPKADLVLLKVLGDGGYGDDHAILSAIAYAASDSVLADIINLSLGVTINKRGEP-GSYTAADAQFIIEMWTRTMQYAYQQGTTVIGATGEDIDGGISLDQKANLALVDIPTSLPHVIGVSATGPVFWGRDQKT-NLDAFAPYSWYGSKIIDFAAPGGNTEVSINHPGAQ---CTYKLRSKTTLSFACSNFDYVLSACCSKKTLFPRSEFNFATRYGWIAGTSMAAPHVAGVAALIVGKAGRRVSPDALLRHLKACTNDLGAAGKDAKYGNGRINAGKVVDL 364
[Close]
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Match: A0A835YV09_9STRA (Subtilisin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV09_9STRA)

HSP 1 Score: 275 bits (703), Expect = 5.320e-85
Identity = 140/170 (82.35%), Postives = 151/170 (88.82%), Query Frame = 2 
Query: 1061 ENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTGSAIDFSAPGGNNMAVNRTAGATQETCSYTLNTGVFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVVDLKF 1570
            ENKWTISVAATGPTFWAKDPK+AKL GSSS+TNTGSAI+FSAPGGN+ A +  A   Q TCSYTLNTGVFST CYRFDYVLSAALS + L S  RYG+PTRYAFV GTSMATPHVAGVAALIRGKKKGRIS DQM EYLK+CS DLGDKGKDPIYG+GL+SASKV+DLKF
Sbjct:    7 ENKWTISVAATGPTFWAKDPKHAKLTGSSSHTNTGSAINFSAPGGNDEAYDFNANI-QATCSYTLNTGVFSTYCYRFDYVLSAALSPDTLVSKLRYGMPTRYAFVEGTSMATPHVAGVAALIRGKKKGRISPDQMLEYLKRCSLDLGDKGKDPIYGYGLVSASKVIDLKF 175
[Close]
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Match: UPI0009B06B4B (S8 family serine peptidase n=1 Tax=Spirosoma rigui TaxID=564064 RepID=UPI0009B06B4B)

HSP 1 Score: 232 bits (591), Expect = 1.890e-64
Identity = 163/396 (41.16%), Postives = 212/396 (53.54%), Query Frame = 2 
Query:  437 PAFKEPD-------YRPLQWSRKAIGADRALNAGLKGKGATVAVLDTGFYLDHPAIK-RYDQSLSYNFIVDEQLAFNYTLANNPGDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVLVKVLSDMGFGYDPQVVGGILYAVAAGVDIISMSLGS-------LSNVTGSPEDG---YTASD---VSMWIQMYNRVFSFAHDRGVTVVVAGGNDAVQMDTQTDLFAFFAENKWTISVAATGPTFWAKDPKNAKLNGSSSYTNTG-SAIDFSAPGGNNMAVNRTAGATQETCSYTLNTGVFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAFVAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPIYGHGLISASKVV 1558
            PAF  P        Y  LQW   AI A  A NAG +GKG  VAVLD+GF LDHP +    D   S NF+  E L +       P D  FSHGTHTA TVA AD  G G IGVAPEA L+LVKVL D G G    ++ GI++AV  G D+ISMSLG+         +  G+P+D    +  SD   V   I   N+V ++A+ +G T++ A GNDA+  +    L    A+    +S++AT P  WAK+P +  L+  +SY+N G S IDF+APGG+          TQ   +     G      Y FD V          FS    G    Y + AGTSMATPH AGVAAL+ GK  G++   +++  L+  + DLG  G+DP YGHG ++A K V
Sbjct:  131 PAFGNPPVSGDNDRYFDLQWGHDAIDAPEAWNAGYRGKGVRVAVLDSGFDLDHPDLAPNIDLGASKNFVTGEVLQY------APNDA-FSHGTHTAGTVAAAD-NGLGVIGVAPEAKLILVKVLRDSGSGDFSWILSGIVHAVNQGADVISMSLGAGIPRNGKFIDDNGTPDDASDDFIVSDTKAVQELIVAINKVTTYAYQQGTTLIAAAGNDAINGNKDRSLVQIPADAPHVLSISATTPIGWAKNPVSTFLDNLASYSNYGTSEIDFAAPGGD----------TQYPGNEVATIGGIRQPVYIFDLV----------FSTGNNG----YYWSAGTSMATPHAAGVAALVIGKNGGQLDPAKVESALRASADDLGKPGRDPAYGHGRVNAFKAV 494
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350806 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C9R8_9STRA0.000e+0100.00Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835YY96_9STRA1.580e-27679.96Subtilisin n=2 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A836C9E9_9STRA1.290e-11942.25Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835YQX2_9STRA3.000e-10347.34Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835ZEI7_9STRA2.580e-10245.65Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835ZJE0_9STRA4.650e-9647.16Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835YSW5_9STRA1.510e-9539.78Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A836CK69_9STRA3.460e-8948.37Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A835YV09_9STRA5.320e-8582.35Subtilisin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
UPI0009B06B4B1.890e-6441.16S8 family serine peptidase n=1 Tax=Spirosoma rigui... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_73contigContig_73:47123..57053 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350806|estExt_Genemark1.C_Ctg_730008
BRITEko00000,ko00001,ko01000,ko01002
KEGG Pathwayko02020,ko02024,map02020,map02024
KEGG koko:K20486
DescriptionSubtilase family
COG categoryO
Max annot lvl1297|Deinococcus-Thermus
EggNOG OGsCOG1404@1|root,COG1404@2|Bacteria,1WJ8K@1297|Deinococcus-Thermus
Evalue1.65e-59
Seed ortholog926560.KE387023_gene2504
Hectar predicted targeting categorysignal peptide
TranscriptId351128
TrackFilteredModels1
ProteinId350806
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350806gene_12842Tribonema minus UTEX_B_3156 geneContig_73 47123..57053 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350806Trimin1|350806|estExt_Genemark1.C_Ctg_730008Tribonema minus UTEX_B_3156 polypeptideContig_73 47740..57031 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12842_4exon_12842_4Tribonema minus UTEX_B_3156 exonContig_73 47123..48025 -
exon_12842_3exon_12842_3Tribonema minus UTEX_B_3156 exonContig_73 48821..49046 -
exon_12842_2exon_12842_2Tribonema minus UTEX_B_3156 exonContig_73 51147..51649 -
exon_12842_1exon_12842_1Tribonema minus UTEX_B_3156 exonContig_73 56496..57053 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12842UTR3_12842Tribonema minus UTEX_B_3156 three_prime_UTRContig_73 47123..47739 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12842CDS_12842Tribonema minus UTEX_B_3156 CDSContig_73 56496..57031 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12842UTR5_12842Tribonema minus UTEX_B_3156 five_prime_UTRContig_73 57032..57053 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12842 ID=mRNA_12842|Name=jgi.p|Trimin1|350806|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2190bp|location=Sequence derived from alignment at Contig_73:47123..57053- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCACAGCAGACCCGGCGGTGCGATGAAATTGGCTATCGTAGCGGCCTTGC
TGGCCTCGGCTGTCGCCGTTCTCGGTGATGGCAACACGCAGCAGGAGTGG
GTGGCGCTAGTTTCCAAGCACGCCAGCCTGGGCTCCAAGATTAGTGCCGG
CGCACTTAGCGAGTACACAACGACGATGAAGAAAGCAATCAGGGCTACAG
GCGCCGACATCACTTCCTACCATCCCGAGATCGGCATGGCCACCATAATT
GGTCCGGCACAGTCCATCACCAGCGTCAAGAAGATGGCGGACGTGGTTGG
CGTGTTTCGCAGCGTGAAGCGCCGCTTCATTCCAGAAGCTGACAAACTAC
TGGGGGGCGCCGCCGGCGGCCGCAGGCTACACGAGGATCATGACACGCTC
GTCGACGCGGCGAGGTCAGCGGCTGCAAGGTTGTTGCCCGCATTCAAAGA
GCCAGACTACCGGCCGCTGCAGTGGTCCAGAAAGGCCATCGGAGCTGACC
GAGCCCTCAACGCTGGCCTTAAAGGAAAGGGCGCCACCGTTGCTGTGCTG
GACACAGGGTTCTACCTCGACCACCCCGCCATCAAGCGCTACGACCAGTC
CCTCAGCTACAACTTCATCGTAGATGAGCAGCTGGCGTTCAACTACACAC
TAGCAAACAACCCTGGTGATCTGGACTTCAGCCACGGCACCCACACCGCC
AGCACAGTGGCTGGCGCTGATCTCGGTGGCAAGGGCACCATCGGCGTAGC
ACCAGAGGCAAACCTGGTGCTGGTCAAAGTGCTTTCCGATATGGGTTTTG
GCTACGACCCTCAGGTCGTGGGGGGCATACTCTACGCGGTGGCAGCGGGT
GTGGACATCATCAGCATGAGCCTGGGCTCTCTTTCCAACGTCACCGGCTC
GCCGGAGGATGGCTACACAGCTAGCGACGTCAGCATGTGGATTCAGATGT
ACAACCGGGTCTTCTCGTTTGCGCACGACCGCGGCGTTACGGTGGTGGTG
GCCGGCGGCAACGACGCTGTCCAAATGGACACGCAGACGGACTTGTTTGC
CTTCTTTGCAGAAAACAAGTGGACCATTTCGGTGGCCGCCACTGGCCCCA
CCTTCTGGGCTAAGGACCCCAAGAATGCCAAACTCAACGGGAGCTCATCA
TACACCAACACCGGCAGCGCCATTGACTTCTCCGCCCCGGGCGGCAACAA
CATGGCTGTTAACAGGACTGCGGGTGCCACGCAGGAGACGTGCAGCTACA
CCCTCAACACGGGTGTCTTCAGCACTTCCTGTTACAGGTTTGACTATGTT
CTTTCAGCGGCGCTCTCCAAGGAGGCGCTGTTCTCTATGCCGAGGTACGG
CATACCCACGCGTTATGCGTTCGTCGCAGGGACGTCAATGGCGACACCGC
ATGTAGCAGGTGTTGCTGCGCTGATTCGCGGCAAGAAGAAGGGGCGCATT
TCGGTCGACCAGATGAAGGAGTATCTCAAGCAGTGCAGCTACGACCTGGG
TGACAAGGGCAAGGACCCCATCTACGGCCATGGTCTCATCAGCGCAAGCA
AGGTCGTTGACCTCAAGTTTTAGTGCCCTCGCCCTTCTTTTTACTTAGAA
TGTTAAATGATAGGGTAAGGGTTTGGGACTAGGGTTGCAGACCCTAGCCT
TAAATGCTAAGGTTGCTACAGTACCACACTCCCTTGGCAGGCTGCTTGAG
CTGTCTGCAATTTAACACGGCGCTGCAGTCTGCGACTTCCGTCGCTCGCA
CCGCTAGCTTTGAACTAGATGATGCACCGGTAGATTTGGCAAAGACGATG
GTCGCGGAGCCATTGCCGTGCTCGCAGCGCCGCCTAAGACGTCAGCAGAT
GCATGCAGCATCACCGCAACAAACACTCAGTGCTGGACAGTCACCTCTCG
AGAAATCGAATCATCGGTAACGGTGGCTGGAAGTTGCGGTGGCGCTCATG
AGTTCACAAGTTCGCTTCAAGTTGTTTGGTACCTGTTGATTTCAGCCTGA
GCCGCTGCTGCGTCAGCTGGCAGCCACTCTGAGTCAGACGTTCCAGCTTT
AGCCTGTATGCAGCAGCTTTTTGTCAAACTAAAGTAGTACATCATATACA
CAGCGAGCACTGCTGCAGCAGGCGCTGCGAGAGTGTAGCTGTGCTGGGAG
CGTCTACTACTACTAATCAATGACTTTCATTTTTCTGCAA
back to top

protein sequence of jgi.p|Trimin1|350806

>Trimin1|350806|estExt_Genemark1.C_Ctg_730008 ID=Trimin1|350806|estExt_Genemark1.C_Ctg_730008|Name=jgi.p|Trimin1|350806|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=517bp
MKLAIVAALLASAVAVLGDGNTQQEWVALVSKHASLGSKISAGALSEYTT
TMKKAIRATGADITSYHPEIGMATIIGPAQSITSVKKMADVVGVFRSVKR
RFIPEADKLLGGAAGGRRLHEDHDTLVDAARSAAARLLPAFKEPDYRPLQ
WSRKAIGADRALNAGLKGKGATVAVLDTGFYLDHPAIKRYDQSLSYNFIV
DEQLAFNYTLANNPGDLDFSHGTHTASTVAGADLGGKGTIGVAPEANLVL
VKVLSDMGFGYDPQVVGGILYAVAAGVDIISMSLGSLSNVTGSPEDGYTA
SDVSMWIQMYNRVFSFAHDRGVTVVVAGGNDAVQMDTQTDLFAFFAENKW
TISVAATGPTFWAKDPKNAKLNGSSSYTNTGSAIDFSAPGGNNMAVNRTA
GATQETCSYTLNTGVFSTSCYRFDYVLSAALSKEALFSMPRYGIPTRYAF
VAGTSMATPHVAGVAALIRGKKKGRISVDQMKEYLKQCSYDLGDKGKDPI
YGHGLISASKVVDLKF*
back to top

mRNA from alignment at Contig_73:47123..57053-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12842 ID=mRNA_12842|Name=jgi.p|Trimin1|350806|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9931bp|location=Sequence derived from alignment at Contig_73:47123..57053- (Tribonema minus UTEX_B_3156 )
GCACAGCAGACCCGGCGGTGCGATGAAATTGGCTATCGTAGCGGCCTTGC
TGGCCTCGGCTGTCGCCGTTCTCGGTGATGGCAACACGCAGCAGGAGTGG
GTGGCGCTAGTTTCCAAGCACGCCAGCCTGGGCTCCAAGATTAGTGCCGG
CGCACTTAGCGAGTACACAACGACGATGAAGAAAGCAATCAGGGCTACAG
GCGCCGACATCACTTCCTACCATCCCGAGATCGGCATGGCCACCATAATT
GGTCCGGCACAGTCCATCACCAGCGTCAAGAAGATGGCGGACGTGGTTGG
CGTGTTTCGCAGCGTGAAGCGCCGCTTCATTCCAGAAGCTGACAAACTAC
TGGGGGGCGCCGCCGGCGGCCGCAGGCTACACGAGGATCATGACACGCTC
GTCGACGCGGCGAGGTCAGCGGCTGCAAGGTTGTTGCCCGCATTCAAAGA
GCCAGACTACCGGCCGCTGCAGTGGTCCAGAAAGGCCATCGGAGCTGACC
GAGCCCTCAACGCTGGCCTTAAAGGAAAGGGCGCCACCGTTGCTGTGCTG
GACACAGGGTGAGTGCAGCGAACACCACGACAATGATGCCATTGGCAACT
TCAGTAATCTTAAAAACTACTGTAGTAACTGTTACTGTACTAGCAGTTAC
TTTAACAGTTTTTAAATTCAATTCCTGCTGACCACAGGGACTGACTGCAG
CAGCTGCCAGTGGATTCAGATTCTGAATTTTTGAACCTGAATTGCAGAGG
TGCTCCGTACTGCCATCATTGATTGCACCAGTTGCGCGTAGCGCGAAAAC
ATTTTCAACCGGTACCGGTACCGGTACACAACAACAGAATTGCGACTTTT
TTGACAGACTGAGTGTAGGGGGTGACTCAGAGGTATGCCCGATCAGGATT
CGGGTCGAAATATATTTCAAAAATGCCACCAGTGGGTCAATCAGTCGACT
CAAACCGAATTGTAACAGTTTCAAAGTTTGTCAAACCGACATCGGCCAAT
TTGAAAGTCGACTACAGTGGCGGCTATGATATAAGAGCGCTCGATGTAAG
AGCGGTCACGGTATAAGAGCGGTCTGACGGCTGAACACGGATCTGGTCGA
TATAAGAGCGGTTTGGTGCAGCTCGGGGCTGCCGCAGACCGCTCTTATAT
CGTGTCCACCAACCACTAGCCGCCTCACGAAAGATGCTTGAACAGCGGAT
TTTGCGTGACACTCAACAACGCTCAAGCGCATATAAAATCAATCAGTCAC
AGCGTATAGCGCACGGTGCGGTTGCTTTCCGGCTTAATTCAAAGCCAACT
GCAACTGTTGGTACACTAAACCTGCTTAAATACTTCAAACCCTAAGTCTA
GGACTAGGGTTACCCTAGGGTTAAGCCCTAACCCTAGTTAAGCCCCAGGA
CGATATAAGAGCGGTCACAGTATAAGAGCGGTGAGGCTGGCGGGACGGAC
CCGCTCTTATATCGTGACCCCCCCTCAGGCTGTATATTCAGTGATGTCCC
GGACCGGTGAAAACTACTGGCATTCAATAACTTAAAGTTAGTATTACGAA
GCTGCTGCCTGATAATATAACCTCCACCGGCAGCCTGACGCATGGCTCAG
AACAGGTGTTGAAGTTTGAAAGTCACTTCCAAAGTTCAAGAAGTTCATGA
ATTTATAATTTAAAAGTTATGGGTGTCAGTGTCACACACAGTGTCCTTCG
GGTCCCATTTCAAAAATGGGATTCGGGTTGATGCACAACCCAAGTTTTCG
GCCCCAGGCCAGACAAATCTGAGGCTCGAACGCTGAGTCTCTCAAACCTC
AAGAACCTCAACAACCTTGCATTATCAGCTCCCTTGCCGTGCACAGCTAA
GCTGTCGTTGGTGTAGTCCAAGAATCGATGGAGTCGAACTTCTCGTTATT
AATTTAGCATGCTGAGCACAGCAGCAGCTGCTGTCATCATGGAATCGCCC
CAATGGCAAACTGATTTATAATAGCACGGCCGGGTCCACATAACTGTTAC
AGTTACTGTAGCTGTGCGCTAATAAGCTGCTGCATCATCAAATGCAGGCA
ATTCTCAGACTGTTTACTGTCAAAGTCTTAAACTTTGATCGGCAACTCTG
TCACTGGCTGGTGCCACAGTGCGCGCCAGGCAAAACGGAAATCACTATGC
CCTGTCCCGAGCGCAAGTTGAACCTCGAGCGGGAGAAAGTGAACTTGAAG
GTGGCACAAATTGTGCAGACTGCCAGATATTGGGAGCTGACCAGGCTGCA
GGGGATACGGTTTATCAGGTTTATCAGATGAAGCACGCTGGCAGCAGTGT
TACAGTAACAATGATAGTGACTGTGTCTCCACTAATAGTGACTGTCTCCA
CTGTTGACAATTCTTGCGCAATCATTTCACGACGATATCCAATTCGGTAC
CCGATGCCGTCAAGCGGAAAGTTCCTACAATTCCCACTACAGTTACACCG
TGAAAGGAGCTTCAAGATGAGCGAGCACTCAGTCTCCAATAGTGCCACCA
GTGGTGTGGCAGCAAACCGTTCAGCTTTTCATATTTTTAATTTTGTAGCT
GCCAGTGGGTGCGCAACGCCTCCAAAAGCCTGGGTCACGGTGCAGTCATG
ATGTGTCCGACAATGCATCGAGAATGCCCGACATTTCCCAAAATCATGAT
TATCCTCAGGCTGGTTATTATGATATCGAATCCAAAGATCGTAGAGCTTT
AGGTGACCAGGAGTAATTTAACTTAGCCGCAAGTGCCTTCCACCAATAAC
CGTCACGGTGGTCCGAGTCGCCGCTGTTGCAGTCATTGGCCACGAGTCAA
ACAGTGCCACAATATTACTGTGAGTAGTCTAGTCAAAAGACTTCAGAATC
TGACAGTCTGTGTGGAAGCTGTTTAGTACTACTAGTATTCCAGGCGTGGG
TGCACTGATCAAGCTTTTCAATGAGCAGCCTCAGGCTGGTATAAGTATAC
GTTACAGTAGTTGGCGACGTGACTAAAACGCGCTGGCACACAATGCCACA
CACACACACAGTGTCATGTCCTTAGACTGAATGAGCGCACAATGTCATCT
ACTCTTAGCATTCAATGTAAGTTACTAATTGTAAGAGCCTACGCAAAAAC
TGATAGACTAAGTCTAATACTTCTTATTTACTCAGTCAGACTTAGTCTGC
TGGATGACATTGTCTACAAACAAAAATTGATTTGCAAAACACAAGCTTTG
ATTTAAATACAGTAACTGAATTCAAAACGGGATCAAAAGGTGTGGACCCT
CCAGTGGACTTCAGAATCTGCCAAACTCTGATGATATATTATATCTAGTA
TCATGGCATTACCTAGAACTTAATTATAATATAATAATATTACAATTCAA
TCATACAATTATGCATGTAGCAAGTTTAAAGACAAAAACAATAATTCATT
TTATGCTCGTTCGGATCGCGAGGTAGTAGTGTTACAGTAGGGCGTAGTGC
AGACTAGGCTGCTGCGTTGACACAAACAATTCAAATGCATTGGCGACCCC
GCCTCCATTCAAGTTGCCAATGTGCCTTTATAAATACAAGTCCACAAACG
CTGTTGCAGTAACAGTAACTCGAGTCCATACTGACTCTTTTAAAATTAGA
ACTTGGACTTGTCCGACAATGAGAACATTGAGCTCAACTTCAACTTTAAA
TTTTGCTTATTGGCAAGTGTCAACTTCAAACGAAGTGTGCAATGTGTTTA
GCCTGAACGCTCACCATGGCCATGTAATAGGCATCTCCAGGAACAAAAAA
ATTAAGTGAAGCAAAAGATTCTTTTTACGCTCAGGATCTTGAGATATGCC
ATGTTGACCCACTGGCAGTTGGACTTGAACATTAACCTCAACTGTGAGCT
TTGGGTAAGTACAGGAGTTCAACTCCAAATTGAAGTTTTTAATATGCTCA
GTGCTTATCGTGGAATCCTAACCAGCTTCAACACTGGTGCCTTTGCCTAA
CACCCTCGACATCATGTTGAAATCGAGCATTGAACGTTGGCAGGGTTCAA
CCAGACTTTGCCGAATCGTCAAAGTGGTTTGATGCTGGGTCCTGTTTTCC
CGATTCATTGACAGGTCCCATTTTTCGCAGTTCGATCCTCCAGCCTTAAC
TCTCACTGACAGGCTTTGCCTGGTCCTTCACCTAATAACCTCAACTGTTA
CATCATGTCGAAATGCTGCAGCGAACGCTGGCAGCCTGTCAGTGAGCCTG
AGTAAAGTTCAACCAGGCTTGAAGTTAAACTTTACAAATTGTCAATGACT
CAGTTTGAAAGTGATTTGATGCTATTAGCCTCAAGCGGCTTGTCTAGTAG
GTCAATGTACTGGCAGGTCCTGTTTCTTGCAATTTAAACCTCTGAGCAAC
ATGCAGTCTGCCAGTGAGACACTCTGCGTTCGAATTGCATGAGAACCGTG
CAAGTTCAAGTTCAAGCGACAATCCACTTGTAAGAGCTTAATAATAACAA
GCTCTCAAGTGCACCGTAGATATGAAGCAAAAGTCGCGTAGTACCAGGCT
GTATCAGGGTGATCAGTGAGGTCTCATTGGCAGACACTTAGAGTGTCCAA
ACAATGTCCGACTCGTGACTCATTATGATCTCGTTCACCGTCACGGTGGT
ACTAGTAGGCTTTGATGCTCCCACAACGGCTTTCACATACCGTCACGGTC
TTCAAAAGTTATCCGATATAATAACAGACAACTTGAAGGCAGCCTTTCCT
GACACGCACTATGCCTGCTACGCTACCGCTCGTAGGTGAGGCAACAAGAA
TGCTACGGATAGCTCGTGCTAAACAACCTGGAGCCTTCGTGTCGCCGCAC
GTTGATTCAGATTTGAAACCCGCTCACCACCTTGAAGTTCTACACTTAGT
CTACGCGCATTCAAGAGCGCTGTCAGTAGCTGCCAGCAGTGCTGCACCTC
CTCAGGCTGTGTTGGGCTACGAGTGCCAGCTGGAGCTGGCCTACCGAACA
CGTGACACCTTTCCGTACTGAAGACACGCTCTCACAACTATAAGTGACTA
GTATAACAGTAACTGTGACAGCTTGCACTTACTGTACCTTAACTGCAGTG
CAGCTGACTAGTCATTGAGAACTATATTTTTTCAACTTCACAGATTGGCA
ATGTGTGCTCTCTCCACACCGGGTCCCGGTCCATTATGATAGTCAGCTGC
TATCATAGTAATACTATCATGGTTGCAGGCAGTTGCAGACAGTCTGAGTT
CACTTCAAAAAATTTGATGGCTGCTGTCACCACAATTTTTAAATTAGAAT
AGTGGTCTCACAGAAGTTAAAGTTAAGTTGCAAGACTGGATGACGGTTCA
CGTTTTTGTGTTTTTGATCCTGGAGCACTGGCAGCACCGTGACACAATTT
CATTATTTCATTCATCGTCTGAAGTTGCTGCATTGCATGCACTGCCACTG
GCAGGTTCTACCTCGACCACCCCGCCATCAAGCGCTACGACCAGTCCCTC
AGCTACAACTTCATCGTAGATGAGCAGCTGGCGTTCAACTACACACTAGC
AAACAACCCTGGTGATCTGGACTTCAGCCACGGCACCCACACCGCCAGCA
CAGTGGCTGGCGCTGATCTCGGTGGCAAGGGCACCATCGGCGTAGCACCA
GAGGCAAACCTGGTGCTGGTCAAAGTGCTTTCCGATATGGGTTTTGGCTA
CGACCCTCAGGTCGTGGGGGGCATACTCTACGCGGTGGCAGCGGGTGTGG
ACATCATCAGCATGAGCCTGGGCTCTCTTTCCAACGTCACCGGCTCGCCG
GAGGATGGCTACACAGCTAGCGACGTCAGCATGTGGATTCAGATGTACAA
CCGGGTCTTCTCGTTTGCGCACGACCGCGGCGTTACGGTGGTGGTGGCCG
GCGGCAACGACGCTGTCCAAATGGACACGCAGACGGACTTGTTTGCCTTC
TTTGCAGGTGAGACTCAGAGTAGCCAAAGGGTTGCACAAAACGTACTACT
TGGCCACACAAATACGGCGCATTTGAGGCATATTTGGCAAGTTGAACCAG
GAATACTATGTCTTGAGCAAACCTCAACATTATAACATGCTGCGCTAAAA
GCGTATTTTGAAGCATGTGCCACCAGACTCAGAGGCTCTGAGTCAGTCAC
TTTTTGAATTGCAAAAAACGGGACCTGAATTCAAAACTTGACCTACAGCC
TGAGGCCCTCTGGGGTGAACTCTGCAAGACTTAATGACCTTTTCTCAATT
ATGATGATGTGGATGTGTTAGTTATCCCCAGAAATATGTAATGCGGCGCA
ACTTTGAAAGATTTTTTTTACCATCAGGATCTCGAGATATACCATACTGA
AGTCGGACTTTAACTGTAACATTGACCTCAACTGTCAATTTTGGCAAAGT
ACATAAGTTCGATCCACATTGAAGTTTGAAAAGTGCTCAGTGCTCATCAC
GGAATCCTAATCAACTCCAATACCGGTCAATTCACCTAAAAACCTCAACA
TCATGTTGAACTTGAGCAGCGAACGCTGACAGGGTTCAACCAGACTTCGC
CAAAGTTTCAGACTGACTTTCAAATTGCAGTATCATACTATCATGTCATT
GATATGCTGGACAATTGTCAAAAACCGAAGCCACTCATATCAGCATCATG
ATATCTGCAAATTCGCAGAGCTGTTCCCGCCAGTCACTGCATCATGATTA
GGATTGCATACACCTTATACCGTAGTACATATATATGCCTTAAATGAATC
ATTACATTATATAAAAAACAATTTCAATATACGCTTTTGATGATAAGTAA
TGCCTGCTTCGCCACCTACTAGGTGTTTCCGCAAAGCGGAAGCAGTGCAG
AGGTGCTGCCGCATCATGATGCTCCTGTTTTAAACTTTAAAAACTAAACA
TTTAAAAGTCGGTACATCTTGACCTCCGAGTCAGAGTCTGTTACTTCAAC
AGCTGCAGGCTGTAGTCAGTGACTTGTGCTCACTTACCCATTCAATCAAC
TGCAATCGAGACCTCCCAGTACATTGTCAGCTGCCAGTGGCTTCAAGCGG
CTTGCTGTTCAACAGCTGCCTCCTCTACGCATAGTGACACTATGCACAGC
GAATGTAAGGCTACGGTCATCATCAGCTATGTGAACTCTTTGAAACCTCT
GCAGCTATGGTGGTGTATGGGGTGTGCGCTGTGGTCGTGCAAGTGACGAA
CCAGAAGTTCCGAGATCAGATTCTGATATATATTCAACACAATGTGACAT
TCAATTTGCCAAGAAAACACCAAGTTGACCGTTTCTTCGCAAGCAGCTCT
GGTAACTTAAAGCTGCTTAGGTCAATGAGTTTGTGAACGACAAAGAGGAG
TTGCAGAGCTTAGTTCTGAGGTCGCGCTTGGTGCCTGAACCGGGCGACGA
TTACTGTTGAGATGGATCAAATATGTTGCGAAATTCAATACAGTGCACTG
CAGCAGCTGAGCTGACACCTCTTGATGTAACAGTTGGAACTGCTGCAGGT
GACTGGCCCAGGGTGTGATGCACCTGAAAGTTACTTGTGTGATGCACCTG
AAAGTCACTGTTTGCATATTTATATACTCAATTTTACATGTGAGTGTGCT
TACAAACTTGAAGTTCAATGTCAACTACTAGTTGCTTAAACCTTTTGACA
AGCCGGCCCTCATCATAATGGCAGGAGGAGTCATTTAAAATAATGCTTAA
GCCCTGGCCCTTATCACAATCGTTATGGCAGAAGGTCCTGGTCCAAGAGT
TATATCATGGCCATAGCAAATATTCTTGAGCCCCGACACGCTATGAGACG
CTGTGCAGCTGAAGACATGAGTATGCCAATGTCACTGATGGCAAAAGATA
CCTGCATGCAACTTCGAAGTCCGCTATGGTAACCCCTTGAACGTACAAGT
GAGCACCAGAACAGACTGGTCCAGGATCTGCGGTCGCTTCTTCCACTGGC
AGTGGGGCTCCGAGCCCCTGGGCCAGGCCTCGCATCCATCCACAATGTGC
GTTAACAATAAGCTCGCCATTTCTTCTGATGTGTTGCTGATGTTTCTTTT
CGACCAGAAAACAAGTGGACCATTTCGGTGGCCGCCACTGGCCCCACCTT
CTGGGCTAAGGACCCCAAGAATGCCAAACTCAACGGGAGCTCATCATACA
CCAACACCGGCAGCGCCATTGACTTCTCCGCCCCGGGCGGCAACAACATG
GCTGTTAACAGGACTGCGGGTGCCACGCAGGAGACGTGCAGCTACACCCT
CAACACGGGTGTCTTCAGCACTTCCTGTTACAGGTGCGACTACCGTAACG
TCAGTTGCCATAGTTTTACACACAGATAGTGAATGACTCAGAGGTACTGC
TTGCGCCACAATGTCTTTGATGTCACACAGCTCCCTATGCTGGGCTCTCA
TGATGCGAAGCATACAGAGCACGCACAGGCTCTGAGCACAATGGCGCACT
CAATACTAGTAGCTCCAATGCCAGCAGCACACCAGCACAGTGTGTCATGC
CAACAGGTAGTAGAACAGCAGGCATGCAGGTCATCCAGGGCCTGTGGGGC
CCCCAACGAACACATACAGCAGCCTGAGCAAAAAAGTTTCTGAGTGCTTT
ACAGCATAGCTGAAGCCTTATTACATTCACATGAGCGTCATGGTGTGCCA
GTGGACTGCCATGCCAGTACTGCCTTGATCAGCGCGTTCTCAGCATTGAA
CCGCAAGTGTAACATATGTAGGCATGCATATTTACGTTACATGTGCACTC
ATCAAAATGTCAAAGCCCATATGCTCTACGGTATACGTTTTGAGATGCAT
CATGTGGCTTTGTAGCCGTTCCGGCAGGACACAGGTGCTTGTACTGTGGT
GCCTGGCAGTGCATTCGATTGCGCCTACTAACACAGTGTGACTCATGCCG
TATTTTGCCAGTCAAATAGTAGTGTATACGTTGCTATGCGCAGTATCAGG
TATGATAGAGTCACATTATATGATTATATTATATGCAGTTTATTTTTCTC
ATTGAATGCTGGCACACATCCCTACGTGTTCTGCACTGTCACGAACACCC
ATGAATCTCATTTTGTTGTTCTTGTCAGGTTTGACTATGTTCTTTCAGCG
GCGCTCTCCAAGGAGGCGCTGTTCTCTATGCCGAGGTACGGCATACCCAC
GCGTTATGCGTTCGTCGCAGGGACGTCAATGGCGACACCGCATGTAGCAG
GTGTTGCTGCGCTGATTCGCGGCAAGAAGAAGGGGCGCATTTCGGTCGAC
CAGATGAAGGAGTATCTCAAGCAGTGCAGCTACGACCTGGGTGACAAGGG
CAAGGACCCCATCTACGGCCATGGTCTCATCAGCGCAAGCAAGGTCGTTG
ACCTCAAGTTTTAGTGCCCTCGCCCTTCTTTTTACTTAGAATGTTAAATG
ATAGGGTAAGGGTTTGGGACTAGGGTTGCAGACCCTAGCCTTAAATGCTA
AGGTTGCTACAGTACCACACTCCCTTGGCAGGCTGCTTGAGCTGTCTGCA
ATTTAACACGGCGCTGCAGTCTGCGACTTCCGTCGCTCGCACCGCTAGCT
TTGAACTAGATGATGCACCGGTAGATTTGGCAAAGACGATGGTCGCGGAG
CCATTGCCGTGCTCGCAGCGCCGCCTAAGACGTCAGCAGATGCATGCAGC
ATCACCGCAACAAACACTCAGTGCTGGACAGTCACCTCTCGAGAAATCGA
ATCATCGGTAACGGTGGCTGGAAGTTGCGGTGGCGCTCATGAGTTCACAA
GTTCGCTTCAAGTTGTTTGGTACCTGTTGATTTCAGCCTGAGCCGCTGCT
GCGTCAGCTGGCAGCCACTCTGAGTCAGACGTTCCAGCTTTAGCCTGTAT
GCAGCAGCTTTTTGTCAAACTAAAGTAGTACATCATATACACAGCGAGCA
CTGCTGCAGCAGGCGCTGCGAGAGTGTAGCTGTGCTGGGAGCGTCTACTA
CTACTAATCAATGACTTTCATTTTTCTGCAA
back to top

Coding sequence (CDS) from alignment at Contig_73:47123..57053-

>mRNA_12842 ID=mRNA_12842|Name=jgi.p|Trimin1|350806|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1551bp|location=Sequence derived from alignment at Contig_73:47123..57053- (Tribonema minus UTEX_B_3156 )
ATGAAATTGGCTATCGTAGCGGCCTTGCTGGCCTCGGCTGTCGCCGTTCT
CGGTGATGGCAACACGCAGCAGGAGTGGGTGGCGCTAGTTTCCAAGCACG
CCAGCCTGGGCTCCAAGATTAGTGCCGGCGCACTTAGCGAGTACACAACG
ACGATGAAGAAAGCAATCAGGGCTACAGGCGCCGACATCACTTCCTACCA
TCCCGAGATCGGCATGGCCACCATAATTGGTCCGGCACAGTCCATCACCA
GCGTCAAGAAGATGGCGGACGTGGTTGGCGTGTTTCGCAGCGTGAAGCGC
CGCTTCATTCCAGAAGCTGACAAACTACTGGGGGGCGCCGCCGGCGGCCG
CAGGCTACACGAGGATCATGACACGCTCGTCGACGCGGCGAGGTCAGCGG
CTGCAAGGTTGTTGCCCGCATTCAAAGAGCCAGACTACCGGCCGCTGCAG
TGGTCCAGAAAGGCCATCGGAGCTGACCGAGCCCTCAACGCTGGCCTTAA
AGGAAAGGGCGCCACCGTTGCTGTGCTGGACACAGGGTTCTACCTCGACC
ACCCCGCCATCAAGCGCTACGACCAGTCCCTCAGCTACAACTTCATCGTA
GATGAGCAGCTGGCGTTCAACTACACACTAGCAAACAACCCTGGTGATCT
GGACTTCAGCCACGGCACCCACACCGCCAGCACAGTGGCTGGCGCTGATC
TCGGTGGCAAGGGCACCATCGGCGTAGCACCAGAGGCAAACCTGGTGCTG
GTCAAAGTGCTTTCCGATATGGGTTTTGGCTACGACCCTCAGGTCGTGGG
GGGCATACTCTACGCGGTGGCAGCGGGTGTGGACATCATCAGCATGAGCC
TGGGCTCTCTTTCCAACGTCACCGGCTCGCCGGAGGATGGCTACACAGCT
AGCGACGTCAGCATGTGGATTCAGATGTACAACCGGGTCTTCTCGTTTGC
GCACGACCGCGGCGTTACGGTGGTGGTGGCCGGCGGCAACGACGCTGTCC
AAATGGACACGCAGACGGACTTGTTTGCCTTCTTTGCAGAAAACAAGTGG
ACCATTTCGGTGGCCGCCACTGGCCCCACCTTCTGGGCTAAGGACCCCAA
GAATGCCAAACTCAACGGGAGCTCATCATACACCAACACCGGCAGCGCCA
TTGACTTCTCCGCCCCGGGCGGCAACAACATGGCTGTTAACAGGACTGCG
GGTGCCACGCAGGAGACGTGCAGCTACACCCTCAACACGGGTGTCTTCAG
CACTTCCTGTTACAGGTTTGACTATGTTCTTTCAGCGGCGCTCTCCAAGG
AGGCGCTGTTCTCTATGCCGAGGTACGGCATACCCACGCGTTATGCGTTC
GTCGCAGGGACGTCAATGGCGACACCGCATGTAGCAGGTGTTGCTGCGCT
GATTCGCGGCAAGAAGAAGGGGCGCATTTCGGTCGACCAGATGAAGGAGT
ATCTCAAGCAGTGCAGCTACGACCTGGGTGACAAGGGCAAGGACCCCATC
TACGGCCATGGTCTCATCAGCGCAAGCAAGGTCGTTGACCTCAAGTTTTA
G
back to top