Trimin1|350798|estExt_Genemark1.C_Ctg_720052 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350798
Unique Name	Trimin1\|350798\|estExt_Genemark1.C_Ctg_720052
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	787

Homology

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BLAST of jgi.p|Trimin1|350798 vs. uniprot
Match: A0A835YNR0_9STRA (SAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNR0_9STRA)

HSP 1 Score: 913 bits (2360), Expect = 0.000e+0
Identity = 786/786 (100.00%), Postives = 786/786 (100.00%), Query Frame = 0

Query:    1 MPSKAVPVAVVAFALCLGTHAFLSPQSCTAQRRASAAPQLSMSSGSGNGGDDMAKLRRDLAVSVAAASLFVLPAIATANEFPSGAGSSFAQEQKLLQKLLKEDTEVKAETVPDVPAAPQVEVPPWMALPEVQPVGGGLKLREPVFQKFDFTKALEGMDFKLGAPDYGKYKFNINAAAPTRWEDRPPVNVPPQLQSVLTNLAQKRAELQAAWERAPPLPADAAAALQALDDAATKALKPYLKDDVPPGFALGLLASAGVAAAGLNSAAANAGAASYKGSYGGSSXXXXXXXXXAAVAEKASAAPGGKXXXXXXXXXXXXXXXXXXXXXXATVAELATLRKELDSAVKTIKELRTDILALQGHNDQLAAELRELRRRPDPAAVAAAXXXXXXXXXKDAQEREARAKVAKEQEVLAAKMAEARAALSQGFPSMKEVTKAKTVYADETQEVRAAADAVAEATAASKQARESKTXXXXXXXXXXPKRPXXXXXXXXXXTAPAPQSSDPVKAAMDDVESKLAGKAEAEAEKLSAXXXXAARAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQQSQEPKAEITXXXXXXXXXXXXXXXXXXXEEPAAPAKXXXAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKQALGLPDGWVPSEKALDLMSVAQLKGFLKEEGLPQTGKKDDLKATIMEYFAKNANK 786
            MPSKAVPVAVVAFALCLGTHAFLSPQSCTAQRRASAAPQLSMSSGSGNGGDDMAKLRRDLAVSVAAASLFVLPAIATANEFPSGAGSSFAQEQKLLQKLLKEDTEVKAETVPDVPAAPQVEVPPWMALPEVQPVGGGLKLREPVFQKFDFTKALEGMDFKLGAPDYGKYKFNINAAAPTRWEDRPPVNVPPQLQSVLTNLAQKRAELQAAWERAPPLPADAAAALQALDDAATKALKPYLKDDVPPGFALGLLASAGVAAAGLNSAAANAGAASYKGSYGGSSXXXXXXXXXAAVAEKASAAPGGKXXXXXXXXXXXXXXXXXXXXXXATVAELATLRKELDSAVKTIKELRTDILALQGHNDQLAAELRELRRRPDPAAVAAAXXXXXXXXXKDAQEREARAKVAKEQEVLAAKMAEARAALSQGFPSMKEVTKAKTVYADETQEVRAAADAVAEATAASKQARESKTXXXXXXXXXXPKRPXXXXXXXXXXTAPAPQSSDPVKAAMDDVESKLAGKAEAEAEKLSAXXXXAARAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQQSQEPKAEITXXXXXXXXXXXXXXXXXXXEEPAAPAKXXXAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKQALGLPDGWVPSEKALDLMSVAQLKGFLKEEGLPQTGKKDDLKATIMEYFAKNANK
Sbjct:    1 MPSKAVPVAVVAFALCLGTHAFLSPQSCTAQRRASAAPQLSMSSGSGNGGDDMAKLRRDLAVSVAAASLFVLPAIATANEFPSGAGSSFAQEQKLLQKLLKEDTEVKAETVPDVPAAPQVEVPPWMALPEVQPVGGGLKLREPVFQKFDFTKALEGMDFKLGAPDYGKYKFNINAAAPTRWEDRPPVNVPPQLQSVLTNLAQKRAELQAAWERAPPLPADAAAALQALDDAATKALKPYLKDDVPPGFALGLLASAGVAAAGLNSAAANAGAASYKGSYGGSSXXXXXXXXXAAVAEKASAAPGGKXXXXXXXXXXXXXXXXXXXXXXATVAELATLRKELDSAVKTIKELRTDILALQGHNDQLAAELRELRRRPDPAAVAAAXXXXXXXXXKDAQEREARAKVAKEQEVLAAKMAEARAALSQGFPSMKEVTKAKTVYADETQEVRAAADAVAEATAASKQARESKTXXXXXXXXXXPKRPXXXXXXXXXXTAPAPQSSDPVKAAMDDVESKLAGKAEAEAEKLSAXXXXAARAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAQQSQEPKAEITXXXXXXXXXXXXXXXXXXXEEPAAPAKXXXAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKQALGLPDGWVPSEKALDLMSVAQLKGFLKEEGLPQTGKKDDLKATIMEYFAKNANK 786

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350798 vs. uniprot

BLAST of jgi.p|Trimin1|350798 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YNR0_9STRA	0.000e+0	100.00	SAP domain-containing protein n=1 Tax=Tribonema mi...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 516..536
None	No IPR available	COILS	Coil	Coil	coord: 380..409
None	No IPR available	COILS	Coil	Coil	coord: 334..375
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 484..739
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..324
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 507..531
None	No IPR available	PANTHER	PTHR12706:SF30	UNNAMED PRODUCT	coord: 84..489
IPR036361	SAP domain superfamily	GENE3D	1.10.720.30	SAP domain	coord: 746..786 e-value: 5.1E-6 score: 28.0
IPR036361	SAP domain superfamily	SUPERFAMILY	68906	SAP domain	coord: 743..780
IPR003034	SAP domain	PFAM	PF02037	SAP	coord: 747..779 e-value: 8.5E-9 score: 35.0
IPR003034	SAP domain	PROSITE	PS50800	SAP	coord: 746..780 score: 9.846269
IPR026741	Protein strawberry notch	PANTHER	PTHR12706	STRAWBERRY NOTCH-RELATED	coord: 84..489

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_72	contig	Contig_72:530819..536685 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350798	mRNA_13462	Tribonema minus UTEX_B_3156	mRNA	Contig_72 530758..537257 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350798|estExt_Genemark1.C_Ctg_720052 ID=Trimin1|350798|estExt_Genemark1.C_Ctg_720052|Name=jgi.p|Trimin1|350798|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=787bp
MPSKAVPVAVVAFALCLGTHAFLSPQSCTAQRRASAAPQLSMSSGSGNGG
DDMAKLRRDLAVSVAAASLFVLPAIATANEFPSGAGSSFAQEQKLLQKLL
KEDTEVKAETVPDVPAAPQVEVPPWMALPEVQPVGGGLKLREPVFQKFDF
TKALEGMDFKLGAPDYGKYKFNINAAAPTRWEDRPPVNVPPQLQSVLTNL
AQKRAELQAAWERAPPLPADAAAALQALDDAATKALKPYLKDDVPPGFAL
GLLASAGVAAAGLNSAAANAGAASYKGSYGGSSGGGSGGGGGAAVAEKAS
AAPGGKGKEEEEGEGDAEVPVSASSGAGATVAELATLRKELDSAVKTIKE
LRTDILALQGHNDQLAAELRELRRRPDPAAVAAAAEAAAAQQEKDAQERE
ARAKVAKEQEVLAAKMAEARAALSQGFPSMKEVTKAKTVYADETQEVRAA
ADAVAEATAASKQARESKTSAAAAAAAAAPKRPAAAAKKAAAATAPAPQS
SDPVKAAMDDVESKLAGKAEAEAEKLSADAEKAARAVAAKAPAKPRAKKA
AAAAAPAAKAAPAQAAAAAAPAAAAAAPAAAAAVAQQSQEPKAEITAAAE
PAAAPAVAQQAEVRKEEPAAPAKPAAAAKPAAAAKPAAAKPAAAAKPAAA
AKPAAAAKPAPAKRAAAKSAAAKPAAAKRAAAKPAASAKRSAAAKPAEAA
DAAAAAQPAAAAKPAAAAKPAAASPAAARKQALGLPDGWVPSEKALDLMS
VAQLKGFLKEEGLPQTGKKDDLKATIMEYFAKNANK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR036361	SAP_dom_sf
IPR003034	SAP_dom
IPR026741	SNO