Trimin1|350797|estExt_Genemark1.C_Ctg_720046 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350797
Unique Name	Trimin1\|350797\|estExt_Genemark1.C_Ctg_720046
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	590

Homology

[Close]

BLAST of jgi.p|Trimin1|350797 vs. uniprot
Match: A0A835YV73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV73_9STRA)

HSP 1 Score: 838 bits (2164), Expect = 3.450e-301
Identity = 589/589 (100.00%), Postives = 589/589 (100.00%), Query Frame = 0

Query:    1 MASSSTNRILQLEGSPQAAPTEWRDALSAFASEHSTSAGILQACGEAAKDKVVAAVLQAMQPQKRADAAALSLQAAALSAAKVLLREAQGSAPLMTMEASEVYLKAAQESRDADEGFAVATAGVSCLVNLLVHEAAAPKPVVAANMLVALPRASTAPRSXXXXXXXXXXXXXXXLLGGARPAPLLHNSXXXXXXXXXXXXXXXXXXXXXXXXXXXLAARALYRLCATRAPAAAVVREGCAXXXXXXXXXXXXXAGTGDCGKTLVILVSLLAWCVRCEDPPFPQGAGVAPLATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLKLLYFLASTGAVDVERAQGAAREVITVLGQALLLRLGQVLAEALLLPHDRAEAYECKLHVVNLLMHMPATYALYLSENGILPSLVRITELQLLACEFEADTFDPAVGLAPILAVLAAAAGSAAEPRRILKALIFPAETDAQWEQYQRRPAAQDEAEAKAERERRMHPADAPPGSLRARLIACLTMVESTSRRFAGELLWALCEGSAGEDXXXXXXXXXXXXXXXXXYRVGFGSGVGLLRTRGLLGAIAGGSAPQ 589
            MASSSTNRILQLEGSPQAAPTEWRDALSAFASEHSTSAGILQACGEAAKDKVVAAVLQAMQPQKRADAAALSLQAAALSAAKVLLREAQGSAPLMTMEASEVYLKAAQESRDADEGFAVATAGVSCLVNLLVHEAAAPKPVVAANMLVALPRASTAPRSXXXXXXXXXXXXXXXLLGGARPAPLLHNSXXXXXXXXXXXXXXXXXXXXXXXXXXXLAARALYRLCATRAPAAAVVREGCAXXXXXXXXXXXXXAGTGDCGKTLVILVSLLAWCVRCEDPPFPQGAGVAPLATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLKLLYFLASTGAVDVERAQGAAREVITVLGQALLLRLGQVLAEALLLPHDRAEAYECKLHVVNLLMHMPATYALYLSENGILPSLVRITELQLLACEFEADTFDPAVGLAPILAVLAAAAGSAAEPRRILKALIFPAETDAQWEQYQRRPAAQDEAEAKAERERRMHPADAPPGSLRARLIACLTMVESTSRRFAGELLWALCEGSAGEDXXXXXXXXXXXXXXXXXYRVGFGSGVGLLRTRGLLGAIAGGSAPQ
Sbjct:    1 MASSSTNRILQLEGSPQAAPTEWRDALSAFASEHSTSAGILQACGEAAKDKVVAAVLQAMQPQKRADAAALSLQAAALSAAKVLLREAQGSAPLMTMEASEVYLKAAQESRDADEGFAVATAGVSCLVNLLVHEAAAPKPVVAANMLVALPRASTAPRSXXXXXXXXXXXXXXXLLGGARPAPLLHNSXXXXXXXXXXXXXXXXXXXXXXXXXXXLAARALYRLCATRAPAAAVVREGCAXXXXXXXXXXXXXAGTGDCGKTLVILVSLLAWCVRCEDPPFPQGAGVAPLATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLKLLYFLASTGAVDVERAQGAAREVITVLGQALLLRLGQVLAEALLLPHDRAEAYECKLHVVNLLMHMPATYALYLSENGILPSLVRITELQLLACEFEADTFDPAVGLAPILAVLAAAAGSAAEPRRILKALIFPAETDAQWEQYQRRPAAQDEAEAKAERERRMHPADAPPGSLRARLIACLTMVESTSRRFAGELLWALCEGSAGEDXXXXXXXXXXXXXXXXXYRVGFGSGVGLLRTRGLLGAIAGGSAPQ 589

[Close]

BLAST of jgi.p|Trimin1|350797 vs. uniprot
Match: D7FRM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRM4_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 9.100e-25
Identity = 151/576 (26.22%), Postives = 224/576 (38.89%), Query Frame = 0

Query:   22 EWRDALSAFASEHSTSAGILQACGEAAKDKVVAAVLQ------AMQPQKRADAAALSLQAAALSAAKVLLREAQGSAPLMTMEASEVYLKAAQESRDADEGFAVATAGVSCLVNLLVHEAAAPKPVVAANMLVALPRASTAPRSXXXXXXXXXXXXXXXLLGGARPAPLLHNSXXXXXXXXXXXXXXXXXXXXXXXXXXXLAARALYRLCATRAPAAAVVREGCAXXXXXXXXXXXXXAGTGDCGKT---LVILVSLLAWCVRCEDPPFPQGAGVAPLATEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVLKLLYFLASTGAVDVERAQGAAREVITVLGQALLLRLGQVLAEALLLPHDRAEAYECKLHVVNLLMHMPATYALYLSENGILPSLVRITELQLLACEFEADTFDPAVGLAPILAVLAAAAGSAAEPRRILKALIFPAETDAQWEQYQRRPAAQ---------DEAEAKAERERRMHPADAPPGSLRARLIACLTMVESTSRRFAGELLWALCEGSAGEDXXXXXXXXXXXXXXXXXYRVGFGSGVGLLRTRGLL 579
            +W   L  F++ H  +  +   CG   K  +V  V++       +  + R+      ++A AL AA++LLRE +G+  LM  EA E Y KAAQE  DA  GF V+   + CL N +  +                      P+                LL  +RPA +L+                              A R ++ +  +  P A                         +  K    L++L+S+LA CVRC  PPFP G     L  +                                         L+ L+ L   G    +  +  A E  T      + RLG VL + L L H   + +  KL V+NLL+ MP  +A  L E+G LP +V++ ELQL+  EF+    D A  L P L VL     ++ E +  +K  IFP E D  W+Q   R   +           AE K  +++R+HP DAP G+LRAR +  +T  ES+S+    +LL+ LC     E+                  R GFG+ V  LR RG++
Sbjct:   19 QWVAILRRFSTAHEATWAVSPVCGLDNKRILVRVVVELLHHTVGLNGRHRSRTLGPGVEAEALLAARILLREREGAERLMDQEALETYTKAAQEDGDAACGFRVSLMALKCLNNAVWDQ----------------------PKGQISFVQLGGLDMLVGLLQASRPASVLY-----------------------------FACR-IFNVVGSSNPTA-----------------------FNELKKKQDLLLLLLSVLAGCVRCTHPPFPGGEDRVKLMVQ----------------------------------------ALQGLFLL---GVRFTQEEKKKALEGDT------MKRLGYVLVDILHLDHAEIDVFMAKLQVLNLLLDMPGGFAEVLLEHGCLPRVVQLVELQLVRQEFQDGGVDAAAELTPGLLVLNKMVLASEESKMAVKRAIFPPEADEVWKQRLEREKRELASLTGDNYKRAE-KISKDKRVHPVDAPKGTLRARFLKQMTATESSSKTAVSDLLFNLC---VDEEEFTT--------------RCGFGNAVNTLRLRGMI 452

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350797 vs. uniprot

BLAST of jgi.p|Trimin1|350797 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YV73_9STRA	3.450e-301	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FRM4_ECTSI	9.100e-25	26.22	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 484..503
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 480..503
None	No IPR available	PANTHER	PTHR12425:SF5	SYNEMBRYN	coord: 19..174 coord: 545..585 coord: 329..541
IPR019318	Guanine nucleotide exchange factor, Ric8	PANTHER	PTHR12425	SYNEMBRYN	coord: 19..174 coord: 329..541
IPR019318	Guanine nucleotide exchange factor, Ric8	PANTHER	PTHR12425	SYNEMBRYN	coord: 545..585

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_72	contig	Contig_72:478315..491268 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350797	mRNA_13459	Tribonema minus UTEX_B_3156	mRNA	Contig_72 477546..491268 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350797|estExt_Genemark1.C_Ctg_720046 ID=Trimin1|350797|estExt_Genemark1.C_Ctg_720046|Name=jgi.p|Trimin1|350797|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=590bp
MASSSTNRILQLEGSPQAAPTEWRDALSAFASEHSTSAGILQACGEAAKD
KVVAAVLQAMQPQKRADAAALSLQAAALSAAKVLLREAQGSAPLMTMEAS
EVYLKAAQESRDADEGFAVATAGVSCLVNLLVHEAAAPKPVVAANMLVAL
PRASTAPRSAAAPEPVVVAKVLVALLGGARPAPLLHNSTAAPQPVVAAKV
LVALLGGARPAPLLHLAARALYRLCATRAPAAAVVREGCAPVAELVHEGC
APVAGTGDCGKTLVILVSLLAWCVRCEDPPFPQGAGVAPLATEGAGMAPL
ATEGAGVASLATEGAGMAPLATEGAGVASLATEVLKLLYFLASTGAVDVE
RAQGAAREVITVLGQALLLRLGQVLAEALLLPHDRAEAYECKLHVVNLLM
HMPATYALYLSENGILPSLVRITELQLLACEFEADTFDPAVGLAPILAVL
AAAAGSAAEPRRILKALIFPAETDAQWEQYQRRPAAQDEAEAKAERERRM
HPADAPPGSLRARLIACLTMVESTSRRFAGELLWALCEGSAGEDELLWAL
CEGSAGEDEFVYRVGFGSGVGLLRTRGLLGAIAGGSAPQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019318	Gua_nucleotide_exch_fac_Ric8