Trimin1|350789|estExt_Genemark1.C_Ctg_720026 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350789
Unique NameTrimin1|350789|estExt_Genemark1.C_Ctg_720026
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length140
Homology
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BLAST of jgi.p|Trimin1|350789 vs. uniprot
Match: A0A835YKS2_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS2_9STRA)

HSP 1 Score: 275 bits (702), Expect = 2.260e-93
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0 
Query:    1 MSALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEEDVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKEPS 139
            MSALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEEDVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKEPS
Sbjct:    1 MSALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEEDVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKEPS 139
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BLAST of jgi.p|Trimin1|350789 vs. uniprot
Match: A0A835YV63_9STRA (Dynein heavy chain, N-terminal region 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV63_9STRA)

HSP 1 Score: 256 bits (654), Expect = 1.960e-79
Identity = 132/136 (97.06%), Postives = 132/136 (97.06%), Query Frame = 0 
Query:    2 SALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEEDVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKE 137
            SALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEE   EPLNRFGGEAAVKALMEATQTAKSISSAIGEAG LPEGVKE
Sbjct:   58 SALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEE---EPLNRFGGEAAVKALMEATQTAKSISSAIGEAGVLPEGVKE 190
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BLAST of jgi.p|Trimin1|350789 vs. uniprot
Match: A0A836CE80_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE80_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 8.800e-19
Identity = 50/94 (53.19%), Postives = 60/94 (63.83%), Query Frame = 0 
Query:    1 MSALQRHQHQVQFRLERGYVTPTG---DKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHL 91
            MSAL+RH+HQV+F   +G+V P+    D   G F C S K      YSG +GEL C+CPQA R  CKHLEAAA  + FTHA   + A ALVDHL
Sbjct:  374 MSALERHEHQVRFIHSKGFVKPSVVHCDNMEGFFICKSAKDKNKI-YSGCIGELHCTCPQAQRAACKHLEAAAMVLPFTHAASAKAAAALVDHL 466
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BLAST of jgi.p|Trimin1|350789 vs. uniprot
Match: A0A835ZFQ6_9STRA (EGF_3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 4.040e-16
Identity = 58/102 (56.86%), Postives = 63/102 (61.76%), Query Frame = 0 
Query:   52 FCSCPQA-CRNVCKHLEAAATSIGFTHAMRLRT----AEALVDHLEE-----------DVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKE 137
            FC+C  +   + C HL AA     F     L T    A A ++   E           DVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKE
Sbjct:   73 FCTCLDSQLFHTCAHLLAAQLHDTFKTGCNLATYDPPAPADINERIEVRRLPPLAMPLDVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKE 174
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350789 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YKS2_9STRA2.260e-93100.00SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YV63_9STRA1.960e-7997.06Dynein heavy chain, N-terminal region 1-domain-con... [more]
A0A836CE80_9STRA8.800e-1953.19SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835ZFQ6_9STRA4.040e-1656.86EGF_3 domain-containing protein n=1 Tax=Tribonema ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 44..74
score: 8.518225

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_72contigContig_72:297848..299276 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350789mRNA_13441Tribonema minus UTEX_B_3156 mRNAContig_72 297443..299276 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350789|estExt_Genemark1.C_Ctg_720026 ID=Trimin1|350789|estExt_Genemark1.C_Ctg_720026|Name=jgi.p|Trimin1|350789|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
MSALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGE
LFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEEDVEEPLN
RFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKEPS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM