mRNA_13441 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350789
Unique NamemRNA_13441
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|350789 vs. uniprot
Match: A0A835YKS2_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS2_9STRA)

HSP 1 Score: 275 bits (703), Expect = 3.000e-91
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1 
Query:    1 MSALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEEDVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKEPS 417
            MSALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEEDVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKEPS
Sbjct:    1 MSALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEEDVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKEPS 139
[Close]
BLAST of jgi.p|Trimin1|350789 vs. uniprot
Match: A0A835YV63_9STRA (Dynein heavy chain, N-terminal region 1-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV63_9STRA)

HSP 1 Score: 256 bits (655), Expect = 2.490e-77
Identity = 132/136 (97.06%), Postives = 132/136 (97.06%), Query Frame = 1 
Query:    4 SALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEEDVEEPLNRFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKE 411
            SALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEE   EPLNRFGGEAAVKALMEATQTAKSISSAIGEAG LPEGVKE
Sbjct:   58 SALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEE---EPLNRFGGEAAVKALMEATQTAKSISSAIGEAGVLPEGVKE 190
[Close]
BLAST of jgi.p|Trimin1|350789 vs. uniprot
Match: A0A835ZFQ6_9STRA (EGF_3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ6_9STRA)

HSP 1 Score: 189 bits (480), Expect = 6.150e-51
Identity = 89/90 (98.89%), Postives = 89/90 (98.89%), Query Frame = 3 
Query:  411 AQLDKVMPAMRELADLCEASMPHFAVESVPSKMTWNRQETDGTCKPLFSHRKRCAPDAADALVCNKPLVRMPECGRQPTKERSLGNFQRQ 680
            AQLDKVMPAMRELADLCEASMPHFAVESVPSKMTWNRQETDGTCKPLFSHRKR APDAADALVCNKPLVRMPECGRQPTKERSLGNFQRQ
Sbjct:  195 AQLDKVMPAMRELADLCEASMPHFAVESVPSKMTWNRQETDGTCKPLFSHRKRSAPDAADALVCNKPLVRMPECGRQPTKERSLGNFQRQ 284
[Close]
BLAST of jgi.p|Trimin1|350789 vs. uniprot
Match: A0A836CE80_9STRA (SWIM-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CE80_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 3.480e-17
Identity = 50/94 (53.19%), Postives = 60/94 (63.83%), Query Frame = 1 
Query:    1 MSALQRHQHQVQFRLERGYVTPTG---DKAMGAFTCTSVKHPGSTSYSGLVGELFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHL 273
            MSAL+RH+HQV+F   +G+V P+    D   G F C S K      YSG +GEL C+CPQA R  CKHLEAAA  + FTHA   + A ALVDHL
Sbjct:  374 MSALERHEHQVRFIHSKGFVKPSVVHCDNMEGFFICKSAKDKNKI-YSGCIGELHCTCPQAQRAACKHLEAAAMVLPFTHAASAKAAAALVDHL 466
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350789 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YKS2_9STRA3.000e-91100.00SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YV63_9STRA2.490e-7797.06Dynein heavy chain, N-terminal region 1-domain-con... [more]
A0A835ZFQ6_9STRA6.150e-5198.89EGF_3 domain-containing protein n=1 Tax=Tribonema ... [more]
A0A836CE80_9STRA3.480e-1753.19SWIM-type domain-containing protein n=1 Tax=Tribon... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_72contigContig_72:297443..299276 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350789|estExt_Genemark1.C_Ctg_720026
DescriptionMULE transposase domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28MET@1|root,2QTYA@2759|Eukaryota,37XPJ@33090|Viridiplantae,34KC8@3041|Chlorophyta
Evalue5.55e-07
Seed ortholog554065.XP_005843545.1
Hectar predicted targeting categoryother localisation
TranscriptId351111
TrackFilteredModels1
ProteinId350789
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350789gene_13441Tribonema minus UTEX_B_3156 geneContig_72 297443..299276 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13441_3exon_13441_3Tribonema minus UTEX_B_3156 exonContig_72 297443..297856 -
exon_13441_2exon_13441_2Tribonema minus UTEX_B_3156 exonContig_72 297918..298049 -
exon_13441_1exon_13441_1Tribonema minus UTEX_B_3156 exonContig_72 298998..299276 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13441UTR3_13441Tribonema minus UTEX_B_3156 three_prime_UTRContig_72 297443..297847 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13441CDS_13441Tribonema minus UTEX_B_3156 CDSContig_72 298998..299276 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350789Trimin1|350789|estExt_Genemark1.C_Ctg_720026Tribonema minus UTEX_B_3156 polypeptideContig_72 297848..299276 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13441 ID=mRNA_13441|Name=jgi.p|Trimin1|350789|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=825bp|location=Sequence derived from alignment at Contig_72:297443..299276- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCACTGCAGCGCCACCAGCACCAAGTCCAGTTCAGACTCGAACG
CGGCTACGTCACTCCAACTGGAGACAAGGCCATGGGGGCGTTCACATGCA
CGAGCGTCAAGCACCCCGGTTCCACCAGCTACTCTGGACTTGTGGGAGAG
CTTTTCTGCTCGTGCCCTCAGGCATGCCGCAATGTATGCAAGCACCTCGA
GGCCGCCGCCACCAGCATTGGATTCACGCACGCTATGCGGCTGCGCACTG
CTGAGGCGCTCGTGGACCACTTGGAGGAGGACGTTGAGGAGCCGCTCAAC
AGGTTTGGGGGGGAGGCTGCGGTGAAGGCACTGATGGAGGCGACACAGAC
CGCCAAGTCCATCAGCAGTGCAATTGGGGAGGCAGGCGCGCTGCCTGAGG
GGGTAAAAGAGCCCAGTTAGACAAGGTTATGCCGGCCATGCGTGAACTGG
CAGATCTTTGCGAGGCATCAATGCCGCACTTTGCAGTCGAATCAGTTCCT
AGCAAGATGACATGGAACAGGCAAGAGACGGACGGGACTTGCAAGCCTTT
GTTTAGTCACCGAAAGCGGTGTGCGCCCGACGCCGCGGATGCGCTTGTTT
GCAACAAGCCACTGGTGCGCATGCCAGAGTGTGGGCGCCAACCCACAAAG
GAACGGTCGCTGGGTAACTTCCAGCGACAGAGTAAGGCATGTTATCCCAA
GCGAAAAACGCGGCAGAAAAGTGGCCCTGCAAACCCACCTCCAGTTTGAC
TTTATCCAGCGCTGCTGTACGTTCACACTGTCATTGCTGCTACTCCCGCA
AATTTCAATTTCTGTTTTCTACCAA
back to top

protein sequence of jgi.p|Trimin1|350789

>Trimin1|350789|estExt_Genemark1.C_Ctg_720026 ID=Trimin1|350789|estExt_Genemark1.C_Ctg_720026|Name=jgi.p|Trimin1|350789|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=140bp
MSALQRHQHQVQFRLERGYVTPTGDKAMGAFTCTSVKHPGSTSYSGLVGE
LFCSCPQACRNVCKHLEAAATSIGFTHAMRLRTAEALVDHLEEDVEEPLN
RFGGEAAVKALMEATQTAKSISSAIGEAGALPEGVKEPS*
back to top

mRNA from alignment at Contig_72:297443..299276-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13441 ID=mRNA_13441|Name=jgi.p|Trimin1|350789|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1834bp|location=Sequence derived from alignment at Contig_72:297443..299276- (Tribonema minus UTEX_B_3156 )
ATGTCAGCACTGCAGCGCCACCAGCACCAAGTCCAGTTCAGACTCGAACG
CGGCTACGTCACTCCAACTGGAGACAAGGCCATGGGGGCGTTCACATGCA
CGAGCGTCAAGCACCCCGGTTCCACCAGCTACTCTGGACTTGTGGGAGAG
CTTTTCTGCTCGTGCCCTCAGGCATGCCGCAATGTATGCAAGCACCTCGA
GGCCGCCGCCACCAGCATTGGATTCACGCACGCTATGCGGCTGCGCACTG
CTGAGGCGCTCGTGGACCACTTGGAGGAGGTCGACTTGAGCAGCGGTGTA
CTTCAATGCAGGCAAGAGAAATACTTTGGTCTTACACTCACTCACTGGCC
GCAATAGTATTTAGCATACCTTGCTAGGGCAGCTATTTGGACGTCACCAT
TTCCGCTTGAGCAGGGCAACTGTCACAGTGGCCCTCATAAATCGCATGCT
GGTTGTAGTCGTGCAGCGATGGCCATGACGGTCGTAGGCCAATTTTATCT
TGCCATTGGTACTCAGTTCTTAAGTTGCCGTTGCGCTGCTAATGGCTGGG
GAAACTAATTTTTCAACACTGCGATTGCCACACTGTTGGGTCATGGCAAA
GTACTATTGATTTTTTTTGCGTTCAGCTTGAAGAAAAAGGAGCTTTGTCA
CCACAGTAATTAGTACTTGGATTATTTTTTGGTGTGTGATGGGACGTAAT
TCCTGACATATTACTTCTAGAAGTAGCATATTGCGTATTGTGATTTTATG
ATGCAGCTGTATTTTCATTGCACACCAGTAGTAAACGCGGCACCCCCGCC
TCCCCTTATGGGGTGTCATGTCACCACATACACTTGACAACGTTTGTTGT
TTAAATTTGTGCACAAACATGATGAGCATCGACTGTTGAGCTGTGAACAT
CAACCTTCCGCTGCAGAGAGCTTCTCACATACTTAGTATACTGTCAGCAA
TATCATGCTGACATATGGCTTTCCCCGTCTGCCTTCTCCCAGGCGGCTCT
GCCCAGCGGCTCCAACAGCTGCTTCATGCACCCTCAACATCTACACCTGG
TTCTGCACATGCCTGGACTCGCAGCTGTTCCACACATGCGCCCATCTTCT
GGCAGCACAGCTACACGATACATTTTTCAAGACCGGGTGCAACCTCGCCA
CCTACGATCCTCCGGCGCCTGCTGACATCAATGAGCGCATTGAAGTGCGG
CGACTCCCACCCCTAGCAATGCTGCAGGACGTTGAGGAGCCGCTCAACAG
GTTTGGGGGGGAGGCTGCGGTGAAGGCACTGATGGAGGCGACACAGACCG
CCAAGTCCATCAGCAGTGCAATTGGGGAGGCAGGCGCGCTGCCTGAGGGG
GTAAAAGAGGTCAGGCGCTGCGCAGCAGTTTTTCGCCAGTTTGCAAACAA
TGCACAGTTGGTTGCGCCAGCCCAGTTAGACAAGGTTATGCCGGCCATGC
GTGAACTGGCAGATCTTTGCGAGGCATCAATGCCGCACTTTGCAGTCGAA
TCAGTTCCTAGCAAGATGACATGGAACAGGCAAGAGACGGACGGGACTTG
CAAGCCTTTGTTTAGTCACCGAAAGCGGTGTGCGCCCGACGCCGCGGATG
CGCTTGTTTGCAACAAGCCACTGGTGCGCATGCCAGAGTGTGGGCGCCAA
CCCACAAAGGAACGGTCGCTGGGTAACTTCCAGCGACAGAGTAAGGCATG
TTATCCCAAGCGAAAAACGCGGCAGAAAAGTGGCCCTGCAAACCCACCTC
CAGTTTGACTTTATCCAGCGCTGCTGTACGTTCACACTGTCATTGCTGCT
ACTCCCGCAAATTTCAATTTCTGTTTTCTACCAA
back to top

Coding sequence (CDS) from alignment at Contig_72:297443..299276-

>mRNA_13441 ID=mRNA_13441|Name=jgi.p|Trimin1|350789|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=420bp|location=Sequence derived from alignment at Contig_72:297443..299276- (Tribonema minus UTEX_B_3156 )
ATGTCAGCACTGCAGCGCCACCAGCACCAAGTCCAGTTCAGACTCGAACG
CGGCTACGTCACTCCAACTGGAGACAAGGCCATGGGGGCGTTCACATGCA
CGAGCGTCAAGCACCCCGGTTCCACCAGCTACTCTGGACTTGTGGGAGAG
CTTTTCTGCTCGTGCCCTCAGGCATGCCGCAATGTATGCAAGCACCTCGA
GGCCGCCGCCACCAGCATTGGATTCACGCACGCTATGCGGCTGCGCACTG
CTGAGGCGCTCGTGGACCACTTGGAGGAGGACGTTGAGGAGCCGCTCAAC
AGGTTTGGGGGGGAGGCTGCGGTGAAGGCACTGATGGAGGCGACACAGAC
CGCCAAGTCCATCAGCAGTGCAATTGGGGAGGCAGGCGCGCTGCCTGAGG
GGGTAAAAGAGCCCAGTTAG
back to top