mRNA_13439 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350788
Unique Name	mRNA_13439
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350788 vs. uniprot
Match: A0A835YL63_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL63_9STRA)

HSP 1 Score: 1086 bits (2808), Expect = 0.000e+0
Identity = 583/583 (100.00%), Postives = 583/583 (100.00%), Query Frame = 1

Query:    1 MRNYKKETELRSSKAKLRDELEGKRDVEETPERRKEALKEGMATLDKEEALEAQRLSDALPRLLKDPEDDDRGDGLGHHEKILVELCELGVFCAVVTDDFDEAKAATTDGHTAEVREKETIDHHDGALSSSWVFIPFMQESYGRLGTRACRFVEDLAMPQRCAQGATAYWIQALNKDRSSSDYPTQEVYTRITTAACTVENTKDAVWMFDAEADAPFIFPVLAARYNPLPAWIAIAHQGLPSMDSPLNDVGAVSSGLRDSAFLIGDTIDAAVVPEHNPFGDADVYLENKGKCPAPASTGSWVDEFNVVSPFPYVVTTTDVFVPWPTVTNTLQASVRLLSGVAACPKLMAAMQREEQAXXXXXMIAAAEAAEAAKAHXXXXXXXXXXAVVNQPEAPAGAVLSIEDVSHEMGFTQAQLAAGLQNIALQRTEEEVDEQQRKLEACQAEHLRLVEEIKKLEPEVQRKRGIMAAFKGELAGNAAAYSEIQAQLKRSRRTLWRACRAHDFTYVYDYDTETAILTPVEEGEDAYTRKERIRAGDMSYDGDAVVERQQAAQDAADAEFEARRFEAENAGESAEEAEQNGDY 1749
            MRNYKKETELRSSKAKLRDELEGKRDVEETPERRKEALKEGMATLDKEEALEAQRLSDALPRLLKDPEDDDRGDGLGHHEKILVELCELGVFCAVVTDDFDEAKAATTDGHTAEVREKETIDHHDGALSSSWVFIPFMQESYGRLGTRACRFVEDLAMPQRCAQGATAYWIQALNKDRSSSDYPTQEVYTRITTAACTVENTKDAVWMFDAEADAPFIFPVLAARYNPLPAWIAIAHQGLPSMDSPLNDVGAVSSGLRDSAFLIGDTIDAAVVPEHNPFGDADVYLENKGKCPAPASTGSWVDEFNVVSPFPYVVTTTDVFVPWPTVTNTLQASVRLLSGVAACPKLMAAMQREEQAXXXXXMIAAAEAAEAAKAHXXXXXXXXXXAVVNQPEAPAGAVLSIEDVSHEMGFTQAQLAAGLQNIALQRTEEEVDEQQRKLEACQAEHLRLVEEIKKLEPEVQRKRGIMAAFKGELAGNAAAYSEIQAQLKRSRRTLWRACRAHDFTYVYDYDTETAILTPVEEGEDAYTRKERIRAGDMSYDGDAVVERQQAAQDAADAEFEARRFEAENAGESAEEAEQNGDY
Sbjct:    1 MRNYKKETELRSSKAKLRDELEGKRDVEETPERRKEALKEGMATLDKEEALEAQRLSDALPRLLKDPEDDDRGDGLGHHEKILVELCELGVFCAVVTDDFDEAKAATTDGHTAEVREKETIDHHDGALSSSWVFIPFMQESYGRLGTRACRFVEDLAMPQRCAQGATAYWIQALNKDRSSSDYPTQEVYTRITTAACTVENTKDAVWMFDAEADAPFIFPVLAARYNPLPAWIAIAHQGLPSMDSPLNDVGAVSSGLRDSAFLIGDTIDAAVVPEHNPFGDADVYLENKGKCPAPASTGSWVDEFNVVSPFPYVVTTTDVFVPWPTVTNTLQASVRLLSGVAACPKLMAAMQREEQAXXXXXMIAAAEAAEAAKAHXXXXXXXXXXAVVNQPEAPAGAVLSIEDVSHEMGFTQAQLAAGLQNIALQRTEEEVDEQQRKLEACQAEHLRLVEEIKKLEPEVQRKRGIMAAFKGELAGNAAAYSEIQAQLKRSRRTLWRACRAHDFTYVYDYDTETAILTPVEEGEDAYTRKERIRAGDMSYDGDAVVERQQAAQDAADAEFEARRFEAENAGESAEEAEQNGDY 583

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BLAST of jgi.p|Trimin1|350788 vs. uniprot
Match: A0A835ZIB2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIB2_9STRA)

HSP 1 Score: 350 bits (898), Expect = 4.020e-112
Identity = 221/396 (55.81%), Postives = 248/396 (62.63%), Query Frame = 1

Query:  697 IAIAHQGLPSM-----DSPLNDVGAVSSGLRDSAFLIGDTIDAAVVPEHNPFG---------------------------------------DADVYLENKGKCPAPASTGSWVDEFNVVSPFPYVVTTTDVFVPWPTVTNTLQASVRLLSGVAACPKLMAAMQREEQAXXXXXMIAAAEAAEAAKAHXXXXXXXXXXAVVNQPEAPAGAVLSIEDVSHEMGFTQAQLAAGLQNIALQRTEEEVDEQQRKLEACQAEHLRLVEEIKKLEPEVQRKRGIMAAFKGELAGNAAAYSEIQAQLKRSRRTLWRACRAHDFTYVYDYDTETAILTPVEEGEDAYTRKERIRAGDMSYDGDAV-VERQQAAQDAADAEFEARRFEAENAGESAEEAEQNGDY 1749
            +A    GL SM     +SPLNDV AVSSGLR+S FLIGD +DAAVVPE N +G                                       DADVYL+N GK PAP  T                                    VR L+GVAA PKLM AMQREEQA     MI AAEA                        A AG+VLSIEDVSHE+GFTQA+LAAGLQNIALQR +E VDEQ+RKLEA Q+EHLRL+ +IK+LEPEV R+RGIMA  K ELA N AAY+EIQAQLK SRRTLWRACRAHDFT+ YDYDTETAILTPV EGEDAYTR++RI AG++S D DA+ VERQQAA++A DAEFEARR +AEN GESAEEAEQNGDY
Sbjct:   51 LASGESGLSSMSPYCMNSPLNDVAAVSSGLRNSVFLIGDIVDAAVVPEQNSYGIPCYILYIETRTPANSNNIKKYLTNLELPKSPHHRFVIEDADVYLDNNGKRPAPIYT------------------------------------VRALNGVAASPKLMDAMQREEQAHQQLFMIEAAEAVG--------------------DRASAGSVLSIEDVSHELGFTQAELAAGLQNIALQRAQEGVDEQRRKLEAYQSEHLRLINQIKELEPEVHRQRGIMAGLKAELASNVAAYNEIQAQLKTSRRTLWRACRAHDFTHEYDYDTETAILTPVVEGEDAYTRQQRIHAGNLSLDVDAIIVERQQAAREAIDAEFEARRIQAENVGESAEEAEQNGDY 390

[Close]

BLAST of jgi.p|Trimin1|350788 vs. uniprot
Match: A0A835ZG51_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG51_9STRA)

HSP 1 Score: 259 bits (661), Expect = 2.400e-76
Identity = 201/467 (43.04%), Postives = 233/467 (49.89%), Query Frame = 1

Query:  499 TAYWIQALNKDRSSSDYPTQEVYTRITTAACTVENTKDAVWMFDAEA---DAPFIF--------------PVLAARYNPLPAWIAIAH-------------------QGLP-----------------------------------------------------------------------SMDSPLNDVGAVSSGLRDSAFLIGDTIDAAVVPEHN------PFGDADVYLENKGKCPAPASTGS---WVDEFNVVSPFPYVVTTTDVFV--------PWPTVTNTLQASVRLLSGVAACPKLMAAMQREEQAXXXXXMIAAAEAAEAAKAHXXXXXXXXXXAVVNQPEAPAGAVLSIEDVSHEMGFTQAQLAAGLQNIALQRTEEEVDEQQRKLEACQAEHLRLVEEIKKLEPEVQRKRGIMAAFKGELAGNAAAYSEIQAQLKRSRRTLWRACRAHDFTYVYD 1527
            TAYW QAL+KD S   +P  EVYTRITTAACTVENTKDAVW +DA+A    APFIF               VL   Y+  P   AI                     QG P                                                                        MDSPLNDVGAVSSGL  SAFL+GDT+DAAVVPE N      P+    +Y+E K    APA++ +    +    +     +     D +V        P PT+T              A P+LMAAM REEQA     MI AAEA  A                    +A AG VLSIEDVSHE+ FT+A+L AGLQNIA+QR ++ V EQ+RKLEA QAEHLRLV+EIK+LEPEVQRKRG+MA +K ELAG AAAY+EIQAQLK SRRTLWRACRAHDF Y YD
Sbjct:    9 TAYWFQALHKDHS---FPAMEVYTRITTAACTVENTKDAVWRWDAKAIPRAAPFIFVRLEKQQAIAAHLAKVLQQFYSSWPDATAIIFTPAELLAPMKFDAMGRAPAQGAPLVVAAARAGGQVKNSAGMDSHRASGSAKGHWNGYVLLIKFLLHRELSDEHDQRCERALASGKPRLSSKFPYCMDSPLNDVGAVSSGLHASAFLLGDTVDAAVVPEENKSHVGVPY--YILYIETK----APANSNNIKKCLTNLQLPESPHHRAVIEDAYVFLENKGQRPAPTIT--------------ARPELMAAMLREEQAHQQLLMIEAAEAVVA--------------------QASAGTVLSIEDVSHELAFTRAELTAGLQNIAVQRAQDGVGEQKRKLEAYQAEHLRLVDEIKELEPEVQRKRGLMAGYKAELAGKAAAYNEIQAQLKVSRRTLWRACRAHDFKYHYD 432

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BLAST of jgi.p|Trimin1|350788 vs. uniprot
Match: A0A836CGX0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGX0_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.640e-13
Identity = 62/131 (47.33%), Postives = 77/131 (58.78%), Query Frame = 1

Query:    4 RNYKKETELRSSKAKLRDELEGKRDVEETPER----------------RKEALKEGMATLDKEEALEAQRLSDALPRLLKDPEDDDRGDGLGHHEKILVELCELGVFCAVVTDDFDEAKAATTDGHTAEVR 348
            R  ++ETELRSS AKLRDE+EG RDV++T ER                ++ + +EG    D E   E  RLSD LPRLL+  + +D GDG G   KIL+EL + GVFC VVTDDFDEA A     H  + R
Sbjct:  493 RRRQEETELRSSNAKLRDEIEGLRDVKDTLERXXXXXXXXXXXXXXXXQRISFEEG----DLERRRE--RLSDMLPRLLQGLDGEDIGDGPGRFGKILIELRQHGVFCCVVTDDFDEADAVQEAAHKYKTR 617

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BLAST of jgi.p|Trimin1|350788 vs. uniprot
Match: A0A835YP37_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP37_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.220e-10
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1

Query:  322 TDGHTAEVREKETIDHHDGALSSSWVFIPFMQESYGRLGTRACRFVEDLAMPQRCAQGATAYWIQA 519
            TDGHTA V E+E I +HDGAL SSW F+PF+QES+GR G +  +F++ LA       G     I++
Sbjct:    6 TDGHTASVGEQEKIKYHDGALGSSWAFVPFVQESFGRFGVKTQQFIKKLAQHSAMCSGGNGAQIKS 71

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BLAST of jgi.p|Trimin1|350788 vs. uniprot
Match: A0A835YP77_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP77_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.740e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1

Query:  307 AKAATTDGHTAEVREKETIDHHDGALSSSWVFIPFMQES 423
            AK   +DGHTAEV EKE  DHHDGALSSSWVF+PF+QES
Sbjct:   24 AKRINSDGHTAEVGEKEKEDHHDGALSSSWVFVPFVQES 62

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BLAST of jgi.p|Trimin1|350788 vs. uniprot
Match: A0A836CCC9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCC9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.660e-9
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1

Query:  304 EAKAATTDGHTAEVREKETIDHHDGALSSSWVFIPFMQESYGRLGTRACRFVEDLAMPQRCAQG 495
            +  A+ TDG+ A V E   + HH G L+SSW F+PF+QESYGRLG +   FV++LAM      G
Sbjct:   94 KTNASNTDGYAAGVGEDAKVKHHTGTLTSSWAFVPFVQESYGRLGKQTRLFVKELAMHSALCSG 157

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BLAST of jgi.p|Trimin1|350788 vs. uniprot
Match: A0A835YMI5_9STRA (Uncharacterized protein n=5 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMI5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.590e-9
Identity = 31/64 (48.44%), Postives = 41/64 (64.06%), Query Frame = 1

Query:  304 EAKAATTDGHTAEVREKETIDHHDGALSSSWVFIPFMQESYGRLGTRACRFVEDLAMPQRCAQG 495
            +  A+ TDG+ A V E   + HH G L+SSW F+PF+QESYGRLG +   FV++LAM      G
Sbjct:  132 KTNASNTDGYAAGVGEDAKVKHHTGTLTSSWAFVPFVQESYGRLGKQTSLFVKELAMHSALCSG 195

[Close]

BLAST of jgi.p|Trimin1|350788 vs. uniprot
Match: A0A835ZF31_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF31_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.620e-8
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1

Query:  304 EAKAATTDGHTAEVREKETIDHHDGALSSSWVFIPFMQESYGRLGTRACRFVEDLAM 474
            +  A+ TDG+ A V E   + HH G L+SSW F+PF+QESYGRLG +   FV++LAM
Sbjct:  182 KTNASNTDGYAAGVGEDAKVKHHTGTLTSSWAFVPFVQESYGRLGKQTRLFVKELAM 238

[Close]

BLAST of jgi.p|Trimin1|350788 vs. uniprot
Match: A0A836CGZ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ3_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.310e-8
Identity = 30/64 (46.88%), Postives = 41/64 (64.06%), Query Frame = 1

Query:  304 EAKAATTDGHTAEVREKETIDHHDGALSSSWVFIPFMQESYGRLGTRACRFVEDLAMPQRCAQG 495
            +  A+ TDG+ A V E   + HH G L+SSW F+PF+QE+YGRLG +   FV++LAM      G
Sbjct:  299 KTNASNTDGYAAGVGEDAKVKHHTGTLTSSWAFVPFVQETYGRLGKQTSLFVKELAMHSALCSG 362

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350788 vs. uniprot

BLAST of jgi.p|Trimin1|350788 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10


Match Name	E-value	Identity	Description
A0A835YL63_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZIB2_9STRA	4.020e-112	55.81	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835ZG51_9STRA	2.400e-76	43.04	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CGX0_9STRA	2.640e-13	47.33	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YP37_9STRA	3.220e-10	48.48	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YP77_9STRA	1.740e-9	76.92	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CCC9_9STRA	2.660e-9	48.44	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YMI5_9STRA	3.590e-9	48.44	Uncharacterized protein n=5 Tax=Tribonema minus Ta...	[more]
A0A835ZF31_9STRA	1.620e-8	52.63	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CGZ3_9STRA	3.310e-8	46.88	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_72	contig	Contig_72:286354..293337 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350788\|estExt_Genemark1.C_Ctg_720024
Hectar predicted targeting category	other localisation
TranscriptId	351110
Track	FilteredModels1
ProteinId	350788

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350788	gene_13439	Tribonema minus UTEX_B_3156	gene	Contig_72 286354..293337 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350788	Trimin1\|350788\|estExt_Genemark1.C_Ctg_720024	Tribonema minus UTEX_B_3156	polypeptide	Contig_72 286460..293337 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13439_8	exon_13439_8	Tribonema minus UTEX_B_3156	exon	Contig_72 286354..287371 -
exon_13439_7	exon_13439_7	Tribonema minus UTEX_B_3156	exon	Contig_72 287489..287603 -
exon_13439_6	exon_13439_6	Tribonema minus UTEX_B_3156	exon	Contig_72 287986..288053 -
exon_13439_5	exon_13439_5	Tribonema minus UTEX_B_3156	exon	Contig_72 288234..288395 -
exon_13439_4	exon_13439_4	Tribonema minus UTEX_B_3156	exon	Contig_72 289149..289337 -
exon_13439_3	exon_13439_3	Tribonema minus UTEX_B_3156	exon	Contig_72 291399..291553 -
exon_13439_2	exon_13439_2	Tribonema minus UTEX_B_3156	exon	Contig_72 291583..291718 -
exon_13439_1	exon_13439_1	Tribonema minus UTEX_B_3156	exon	Contig_72 293323..293337 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_13439	UTR3_13439	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_72 286354..286459 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13439	CDS_13439	Tribonema minus UTEX_B_3156	CDS	Contig_72 293323..293337 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_72:286354..293337-
coding sequence from alignment at Contig_72:286354..293337-

spliced messenger RNA

>mRNA_13439 ID=mRNA_13439|Name=jgi.p|Trimin1|350788|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1858bp|location=Sequence derived from alignment at Contig_72:286354..293337- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGAAATTATAAGAAAGAGACCGAGCTGCGCTCCAGCAAGGCGAAACT
TCGCGATGAGCTCGAGGGCAAGCGCGATGTGGAGGAGACCCCGGAGCGGC
GGAAGGAGGCGCTGAAGGAGGGCATGGCCACGCTGGACAAAGAGGAGGCG
CTGGAGGCGCAAAGATTGAGCGACGCGCTGCCGCGACTGCTGAAGGATCC
GGAAGATGACGATCGAGGTGACGGCCTGGGGCATCATGAGAAGATACTCG
TAGAGCTTTGTGAGCTCGGGGTGTTCTGCGCCGTTGTCACCGACGACTTT
GACGAGGCCAAAGCGGCCACCACGGATGGGCACACAGCGGAGGTGAGGGA
GAAGGAGACAATTGATCACCACGATGGCGCGCTGAGCTCATCATGGGTGT
TTATCCCCTTCATGCAGGAGTCGTACGGACGATTGGGGACTCGGGCATGC
CGATTCGTCGAGGACCTGGCGATGCCTCAGCGCTGCGCACAGGGGGCAAC
AGCCTACTGGATCCAAGCCCTCAACAAGGATCGCAGCAGCAGCGACTATC
CCACCCAGGAGGTGTACACACGCATCACCACTGCGGCTTGCACGGTGGAG
AACACGAAGGATGCTGTGTGGATGTTCGACGCAGAGGCTGATGCCCCGTT
CATCTTCCCCGTGCTAGCAGCCAGGTACAACCCTCTGCCGGCATGGATCG
CCATCGCGCATCAGGGGCTGCCAAGTATGGACTCGCCCCTCAACGACGTC
GGTGCAGTCAGCTCTGGTCTGCGCGATTCAGCTTTTCTGATTGGGGACAC
CATCGACGCCGCTGTCGTGCCGGAGCACAACCCGTTTGGAGACGCCGACG
TGTACCTCGAAAACAAGGGCAAGTGCCCTGCACCGGCGAGTACAGGGTCA
TGGGTGGATGAGTTTAACGTTGTTTCACCTTTTCCGTACGTCGTCACCAC
CACCGACGTCTTCGTGCCGTGGCCCACTGTCACCAACACTCTTCAAGCAT
CGGTGCGTTTGCTCAGCGGCGTTGCAGCGTGCCCAAAGCTGATGGCCGCC
ATGCAGCGTGAGGAGCAGGCGCAACAGCAGCTGCTCATGATCGCGGCAGC
GGAGGCGGCGGAGGCGGCAAAGGCGCATCAGCAGCTGCTCATGATCGAGG
CGGCGGAGGCGGTTGTCAACCAGCCTGAGGCTCCTGCTGGCGCCGTGCTC
TCCATTGAGGATGTGTCGCATGAGATGGGTTTCACTCAGGCGCAGCTGGC
TGCTGGGTTGCAGAACATTGCGCTGCAGCGCACGGAGGAGGAAGTTGACG
AGCAGCAGCGCAAGCTGGAGGCATGCCAAGCTGAGCATCTTCGCCTCGTC
GAAGAGATCAAGAAGCTGGAGCCGGAGGTGCAGCGGAAGCGTGGGATCAT
GGCGGCGTTCAAGGGGGAGCTGGCGGGCAATGCGGCAGCGTACAGCGAGA
TTCAGGCGCAGCTGAAGAGGTCCAGGCGCACGCTCTGGCGAGCGTGCAGG
GCTCACGACTTCACGTACGTGTATGACTACGACACTGAAACCGCAATCCT
CACTCCAGTAGAGGAGGGAGAGGACGCCTACACGCGAAAGGAGCGTATTC
GCGCCGGCGATATGTCCTATGATGGTGACGCTGTAGTAGAGCGTCAGCAG
GCTGCACAGGACGCAGCCGATGCAGAGTTTGAAGCTCGGCGCTTTGAGGC
CGAAAATGCAGGTGAAAGTGCAGAGGAGGCGGAGCAGAACGGCGACTACT
AATGCAGTAGTCGCTCAGCATGCTGAAGCAGTGAGGTGTAGTTAACCTCA
CCGACACACACACACACGCACTTGCAACTATAAAGCACGCATGCATACAT
TGGTGTCC

protein sequence of jgi.p|Trimin1|350788

>Trimin1|350788|estExt_Genemark1.C_Ctg_720024 ID=Trimin1|350788|estExt_Genemark1.C_Ctg_720024|Name=jgi.p|Trimin1|350788|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=584bp
MRNYKKETELRSSKAKLRDELEGKRDVEETPERRKEALKEGMATLDKEEA
LEAQRLSDALPRLLKDPEDDDRGDGLGHHEKILVELCELGVFCAVVTDDF
DEAKAATTDGHTAEVREKETIDHHDGALSSSWVFIPFMQESYGRLGTRAC
RFVEDLAMPQRCAQGATAYWIQALNKDRSSSDYPTQEVYTRITTAACTVE
NTKDAVWMFDAEADAPFIFPVLAARYNPLPAWIAIAHQGLPSMDSPLNDV
GAVSSGLRDSAFLIGDTIDAAVVPEHNPFGDADVYLENKGKCPAPASTGS
WVDEFNVVSPFPYVVTTTDVFVPWPTVTNTLQASVRLLSGVAACPKLMAA
MQREEQAQQQLLMIAAAEAAEAAKAHQQLLMIEAAEAVVNQPEAPAGAVL
SIEDVSHEMGFTQAQLAAGLQNIALQRTEEEVDEQQRKLEACQAEHLRLV
EEIKKLEPEVQRKRGIMAAFKGELAGNAAAYSEIQAQLKRSRRTLWRACR
AHDFTYVYDYDTETAILTPVEEGEDAYTRKERIRAGDMSYDGDAVVERQQ
AAQDAADAEFEARRFEAENAGESAEEAEQNGDY*

mRNA from alignment at Contig_72:286354..293337-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13439 ID=mRNA_13439|Name=jgi.p|Trimin1|350788|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6984bp|location=Sequence derived from alignment at Contig_72:286354..293337- (Tribonema minus UTEX_B_3156 )
ATGAGAAATTATAAGGTAAGGGGGGTGCGCCTTAGACTACGAGTGTCGCC
AAATCAGTTCGGAAAGGGGTAATTGTCACTAGGTGTTGTATTTGCAAGCT
TTCGTGCTTGTACGTGAGACAAGTACTAGGCTCATGACTGCAGATGAAGT
TTGTGCCTCAAGTACATCTGATTGAAGTTTATTAACCTCAAGTTGAAGTT
TAAGGCCTCCCTGCTTGTACTTTCATCATTATGTGTAGGTCCACGTACCC
TTGGCCTGACCAGCTTGCACCAGCCTCGGCTATATACATGTAGTTATGTG
GAAAAAAGGTTTTTAGTGGTGCAAGTACAAGCTGCAGTGAATGTCAATCC
GAAAAAGGTGTGCTGCATGCAGCCATTCTTTAAGGAGCTTGCCAAAGCAA
TTTCGGCGTTCGAAAAAGCAGCTGCACCAGAGCCTGGCACGTGCTGCGGA
GCTCAATGCGACGTTAGCATTTGTAACGCAAGCGCATGTGCAACAACAGG
AGCACCTTCGCAGCGAGTCGCGGACAAACGAAGGGGGGAGGCAAGGGTCC
ATACAAGACGGTCCCGAATGATGATGGAGAAACGACGTACCAGTTGTCTG
GAAAAGCGCGTCAGCTTGCGACGGCGGCTGGCTTCTAAGTGAGTGGGCTC
GTGTGGCTGCTTGGAGCGGGATGGCGTATAAACAGCATCATGTCGTTCAT
TCATTGACTGGAACATGGCATTTGAACAGCATGTCACCAAATGGTGCCGT
ATTATGTTGCTTGCAGCAGCGTTGATCCCTGTTTGCACAGCGCCTGCCAG
TCGTGCAGTGCTCACCATTGTTTGCAGCAGCGTTGATCCCCTATTTGCAC
AGCGCCTGCCAGCCGTGCGTTGCTCACCATTGCAATCAAATGCCATGAGA
GCTATGAAAGACCACTGGTTGTGCGTGGACACGTGAATTACTCTTGACAC
TGTCGACATGCACTGCGTTGTGCAGTCGTCAAACCTTGTGTTCATCTTTG
GATTGTCGGCTTTGTTGTTGCCAGCCTAAAACTATTTCTGCTGCCTGCTT
TCATGGTGCAGGCCGTCACGTCATGTCAGCCATCATTGGGGCTCCGTGAA
CATCTGAGCTGAGCATGACCGTGTCAATCACTGGTAACGGTGAGTACAGT
TTGGACTACTACTACTACTACTTTTCATCAAATATCCTATGCCCTCTACG
CGTCATGGATTATGGCAGTACGTTGCTATAGTACTTCCTGAGAACTATAA
CATACATGGGCTTATAATATACATTGTGCGCAGTACAATCAGTGTCATTA
TGCGCACAATGCTAGCTACCAGTGTGCACAGCCAAACTTGCAGCGTAGCC
AGCGCTTGCAGAACTTGCAGCATAGCCAACACTTACAGCACAGTAGCATT
GGCAGCATCTGTAGCATGGCCGACACGTGGCGTTCGCAGCACCGTGTCAA
TTGCAGCATCTGCAGCACGGCCGATATTTGCAGCACTGTAGCAATCGCAG
CACCTTGTCAGTCGCAGCTGCTGTGGCGCGGCTTCGCGCAGCGGCCCGCC
GACCGCGCTGACTCGCTCACTCGCGACACGACCCACCCTCTTCCTTCAGA
GCTCTGACGGCGCCGCCAGAAAGAGACCGAGCTGCGCTCCAGCAAGGCGA
AACTTCGCGATGAGCTCGAGGGCAAGCGCGATGTGGAGGAGACCCCGGAG
CGGCGGAAGGAGGCGCTGAAGGAGGGCATGGCCACGCTGGACAAAGAGGA
GGCGCGTCTGACTTTTTATGAGGACAACCTGCAGTGGAGGCGCAAAGATT
GAGCGACGCGCTGCCGCGACTGCTGAAGGATCCGGAAGATGACGATCGAG
GTGACGGCCTGGGGCATCATGAGAAGATACTCGTAGAGCTTTGTGAGCTC
GGGGTGTTCTGCGCCGTTGTCACCGACGACTTTGACGAGGTGGGCGCGAT
GCGAGAGGCGCGACACAAGTGTAACTCGCAAACTGGCGCTTCAGCAGATG
CTTGTCGCTGCCGAAGCTGACGAATGTGACATGTATGAAAGGTTGCAGAG
CACATTCAGGCACATGCTGATGCGTGGAGGGCTCAGAAGCTTCTTGGACA
AAGTCAAGCTCGTGGCTGAAGGCCTCGGGGGTACAGTGTCAGGGGCGCAT
GTGGTGGGCGTCCGGCTACTCAGAAACACTCTTGTGCCCGACGTGAATCA
AACTACGGTTGCGGTCATGTGGAAGTGTTTCTCTCACTCTCTTCGCTCGC
TGTTGCTAGGTGTCAGTATTGTTAGCACACAGATGCCAGATCGCCGCTTG
CTACTCATGCGTCCTCGCTCGCTACGTACTGCACAGGTGGCACGTCAGGA
AAACGGGGTGGTCAGTTCTTGCACAAAAACCAGCACATACTATGCAGGCG
CAAAATAGCGCATTTTGCACATAGCATGTGCGATTTTGCTCACGCTTGCA
AAAATTCCATTTTGTTTGTGCGCAGAACGTCTCTTGGACAAGTAGCTTGC
AGGCATTTGCCTTGTTTTGGCAGCAGAATTGCAGCATAATCACACAGGCA
TGAGCAAAGATAGCAACGTGGAAAATGTGAACTTTGGCGCAGGGTATGTG
TGCACATGCTTGTATGTGGCGGCTATGCTGCTAGTAGTACGCAGGCCCTG
CGGTTCTCAACCGCAGGCTCCACGCAGCTGTTGACTTCTCAGCGCCCGGT
GGAACGCGATCCTCCTTGGCCACCTGCGTGGGGCACAATGAACATGAAAA
GTGCTGTGCATCAGGTCTGTCAAAGACCTGTTGACAACTGTGCTGAGTCC
ACCTTTTTTATAACTCTTGTTTCTTGACTTGGAAGAAGTACTGTGTCATC
ATGAGGTATCACACACGGAAACATCACCAAGCAACTTGTCATTGACCTTT
GCACGCGCTTCATTTGCACAATCGGCGTAGGTGCGCACGGCACTGCACTG
CACCGCCGCGCATTGCATGCATGCAGCCTGACCTTGAACTTTGAAGAACA
ATGCTGGCGCATGAAGGCTGCACAGATTGTTCTCTAATGCAACGACGTGC
TGCAGCACGAGCTCCGTCAAAGCACTTCACGGGCTGCATAGGCAAGTCTA
GATAACACTCTCCAACAAAGCTTTAGAACCACCAGTGATGCGCCTCGTGC
GACACCGTCAACTTGAATGATATTGCAGACACACACGCAAGGTGACTGCA
GCATGGGCATGCGGCCCTACCGAATGAGCGAGTCTCCCGCCGTATGGTAA
TACGTTGTTCTATTTCATTCAATCATGACTATCGTTGTGCAATCCACATA
GGCACTCAGAATTCACCACTTTTCATCATTCGCCAGTACAGCACAGAGAG
AGTGATGACCACGCTACCAATCCTTTGACTCTCATGTACAAGCGCGAAAG
CTTGTAAATCACAACACCAGTGAGCATGATCATTTGCAAACTGCTTTGGC
GGCACTCAGAGTTCAGGGGTTTCCTCCTTACCTTATAGTTTCATATGAGG
CAGTCTAGCTGGGTTAGACAGAGAACCCAGGATGGTCGACCACGCCAGTG
GCAAAAAACATCATGGGCTGCCCACGCAAAAAAAAAGTGGTCATTAAAAA
AACCGCTAGGGCCTCCTGTGGGCAATGACCACAGAAGAAGCGCATGGTGA
CTCTTGTCCCTGGTTCTTAACATGTGTGGCACATAGAAGATGTCTTCTAT
GAGTGAGTTTTGGGCAAGTTTAACGTGACTTCACCTACATAAATATCATG
CTGAGCTTGCGTTCTGGCAACTCTTGGGAGCTTGTTGGCTTTTATTGCAC
TAGACACCAAGGATGATGAGCAAATATTGATGCAAATGACATGCGAACAC
CTAAATGTGGCACCCTGCCCGTATATCGGTCTTTTGTGGGCTACTTGTGG
CCCAGCAACCGTCGTTTTGACTACTGACAGCCTACAGCTAGATAACTGAG
AGCCTTACGCACTGCTAGTACGTTTCCATATATAATACCTCGCGGGCAAG
GCCAAAGCGGCCACCACGGATGGGCACACAGCGGAGGTGAGGGAGAAGGA
GACAATTGATCACCACGATGGCGCGCTGAGCTCATCATGGGTGTTTATCC
CCTTCATGCAGGAGTCGTACGGACGATTGGGGACTCGGGCATGCCGATTC
GTCGAGGACCTGGCGATGCCTCAGCGCTGCGCACAGGGGGTAGGGGGGCA
CAGATGAAGCGCAAAGCCGCACAACAAGAAACAGATAATTGCGGCGGTGA
GCAGGTCGCTAGCGTACTGCAGGAGCTCGCAGAGAGTGTCAGAGTGTGCG
TGGTGCACACATGCTTGGCTGCACCGTGACAGCGCCCGGTATTGGCGCTA
CTCGGACATGGCTCTGTTTAAACAGAGCAGCCCACAGATTCTCCGCGGTT
CCCACACACACAGCCGGCCTTCCTCGCGGCCCTTTTTAATACAAACTTTT
TATTATTATGAGCTTTGGGAGCACAACTTCATGTGTGTGTCACAACAACC
TACGGGGTCAACAACATGTTGAGTAACCCTAACCCTTACCCTGACCCTTT
TTAACACTTGTGTTGTTATGAGCCTCAGGAGCACAACTCCAGGTGTGTAT
CACAACAACCGTTGCATGTGTGTGGCTGACTTTTTAATGCGAGAATATGT
ACTCATGAGTACATGCATAATGCATACATACATACATACTACATACATAA
TACATACATATGCAATGAGCATAGGTCTAGGTATGCTAGCTATAGAACAC
AGATGCAAGTAATACACATAAGCTCTTGTTCACGTAAGATATATATTTCT
TGAAGTAAAATATAGATCCGTATGTATGTATTATGTATGTATTGTGTATG
TATGTATCTGAACGCATGAGATGGGGTCACGACGGGTAAACCAGCAGCAG
AGAACGCCCACAACAACAGCCATGGCGGCGTCCCGCGGGCAGGCAACAGC
CTACTGGATCCAAGCCCTCAACAAGGATCGCAGCAGCAGCGACTATCCCA
CCCAGGAGGTGTACACACGCATCACCACTGCGGCTTGCACGGTGGAGAAC
ACGAAGGATGCTGTGTGGATGTTCGACGCAGAGGCTGATGCCCCGTTCAT
CTTCGTGAGGCTAGAGAAGCAGCGAGCCATCGCTGCTCGTCTCGATTAGG
TCCTACAGCAGTTTCGCAGCTCTTGCCCGACGCCCCCGCCATCATCTTCA
CGGCTGCGGGGGTGCTGACACCAATGCAGTTTGACGCCGTGGCTAACCCT
CCTGCACAAGGAGCACCATCGCCATCGGCCGCAGCCCGTGCTAGCAGCCA
GGTACAACCCTCTGCCGGCATGGATCGCCATCGCGCATCAGGGGCTGCCA
AGGTCAGTAAAATAGTTGTTGCTGTTGTGTTGGGCGAAGGTGTGCTGTGT
GCTGCTTTTGTGTTTGTGCTCGTTTCACACCGGGTCCCGCGTGTATCCTT
ATTGTGCACACATAGTAGTCCGATCTGCACGAGTGGGTCCATTTAAGAGT
CAAGTAAGTAAAGTAGCTAATGCTGTTGTGTTGGGCGAAGTGTGCTGCTT
TTGTGTTTGTGCTCATTGATTCCGCGTGTATCCTTTTTGTGCACACTTGT
TGCAGGGGCACTGAAACGGCTATGTCCTGCTCATCAAGTTCCCGCTGCAC
CTCCGGCGGAGGGAAGAGCACGAGGAGATGTATCGGCGCGCGGGCCAAAG
GCGAACCCCCGCTGTCGCTCATATCCCCTTACAGTATGGACTCGCCCCTC
AACGACGTCGGTGCAGTCAGCTCTGGTCTGCGCGATTCAGCTTTTCTGAT
TGGGGACACCATCGACGCCGCTGTCGTGCCGGAGCACAACCCGTTTGGAG
TACCGTTTTACATCCTGTACATCGAGACCAAGACACGCGCCAACAGCAAC
AACATCAAGAAGTACTTGACCAGCCTTGAGCTGCCAAAGTGACCCTACCA
CCGTTCCGTCATCGAGGACGCCGACGTGTACCTCGAAAACAAGGGCAAGT
GCCCTGCACCGGCGAGTACAGGGTCATGGGTGGATGAGTTTAACGTTGTT
TCACCTTTTCCGTACGTCGTCACCACCACCGACGTCTTCGTGCCGTGGCC
CACTGTCACCAACACTCTTCAAGCATCGGTGCGTTTGCTCAGCGGCGTTG
CAGCGTGCCCAAAGCTGATGGCCGCCATGCAGCGTGAGGAGCAGGCGCAA
CAGCAGCTGCTCATGATCGCGGCAGCGGAGGCGGCGGAGGCGGCAAAGGC
GCATCAGCAGCTGCTCATGATCGAGGCGGCGGAGGCGGTTGTCAACCAGC
CTGAGGCTCCTGCTGGCGCCGTGCTCTCCATTGAGGATGTGTCGCATGAG
ATGGGTTTCACTCAGGCGCAGCTGGCTGCTGGGTTGCAGAACATTGCGCT
GCAGCGCACGGAGGAGGAAGTTGACGAGCAGCAGCGCAAGCTGGAGGCAT
GCCAAGCTGAGCATCTTCGCCTCGTCGAAGAGATCAAGAAGCTGGAGCCG
GAGGTGCAGCGGAAGCGTGGGATCATGGCGGCGTTCAAGGGGGAGCTGGC
GGGCAATGCGGCAGCGTACAGCGAGATTCAGGCGCAGCTGAAGAGGTCCA
GGCGCACGCTCTGGCGAGCGTGCAGGGCTCACGACTTCACGTACGTGTAT
GACTACGACACTGAAACCGCAATCCTCACTCCAGTAGAGGAGGGAGAGGA
CGCCTACACGCGAAAGGAGCGTATTCGCGCCGGCGATATGTCCTATGATG
GTGACGCTGTAGTAGAGCGTCAGCAGGCTGCACAGGACGCAGCCGATGCA
GAGTTTGAAGCTCGGCGCTTTGAGGCCGAAAATGCAGGTGAAAGTGCAGA
GGAGGCGGAGCAGAACGGCGACTACTAATGCAGTAGTCGCTCAGCATGCT
GAAGCAGTGAGGTGTAGTTAACCTCACCGACACACACACACACGCACTTG
CAACTATAAAGCACGCATGCATACATTGGTGTCC

Coding sequence (CDS) from alignment at Contig_72:286354..293337-

>mRNA_13439 ID=mRNA_13439|Name=jgi.p|Trimin1|350788|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1752bp|location=Sequence derived from alignment at Contig_72:286354..293337- (Tribonema minus UTEX_B_3156 )
ATGAGAAATTATAAGAAAGAGACCGAGCTGCGCTCCAGCAAGGCGAAACT
TCGCGATGAGCTCGAGGGCAAGCGCGATGTGGAGGAGACCCCGGAGCGGC
GGAAGGAGGCGCTGAAGGAGGGCATGGCCACGCTGGACAAAGAGGAGGCG
CTGGAGGCGCAAAGATTGAGCGACGCGCTGCCGCGACTGCTGAAGGATCC
GGAAGATGACGATCGAGGTGACGGCCTGGGGCATCATGAGAAGATACTCG
TAGAGCTTTGTGAGCTCGGGGTGTTCTGCGCCGTTGTCACCGACGACTTT
GACGAGGCCAAAGCGGCCACCACGGATGGGCACACAGCGGAGGTGAGGGA
GAAGGAGACAATTGATCACCACGATGGCGCGCTGAGCTCATCATGGGTGT
TTATCCCCTTCATGCAGGAGTCGTACGGACGATTGGGGACTCGGGCATGC
CGATTCGTCGAGGACCTGGCGATGCCTCAGCGCTGCGCACAGGGGGCAAC
AGCCTACTGGATCCAAGCCCTCAACAAGGATCGCAGCAGCAGCGACTATC
CCACCCAGGAGGTGTACACACGCATCACCACTGCGGCTTGCACGGTGGAG
AACACGAAGGATGCTGTGTGGATGTTCGACGCAGAGGCTGATGCCCCGTT
CATCTTCCCCGTGCTAGCAGCCAGGTACAACCCTCTGCCGGCATGGATCG
CCATCGCGCATCAGGGGCTGCCAAGTATGGACTCGCCCCTCAACGACGTC
GGTGCAGTCAGCTCTGGTCTGCGCGATTCAGCTTTTCTGATTGGGGACAC
CATCGACGCCGCTGTCGTGCCGGAGCACAACCCGTTTGGAGACGCCGACG
TGTACCTCGAAAACAAGGGCAAGTGCCCTGCACCGGCGAGTACAGGGTCA
TGGGTGGATGAGTTTAACGTTGTTTCACCTTTTCCGTACGTCGTCACCAC
CACCGACGTCTTCGTGCCGTGGCCCACTGTCACCAACACTCTTCAAGCAT
CGGTGCGTTTGCTCAGCGGCGTTGCAGCGTGCCCAAAGCTGATGGCCGCC
ATGCAGCGTGAGGAGCAGGCGCAACAGCAGCTGCTCATGATCGCGGCAGC
GGAGGCGGCGGAGGCGGCAAAGGCGCATCAGCAGCTGCTCATGATCGAGG
CGGCGGAGGCGGTTGTCAACCAGCCTGAGGCTCCTGCTGGCGCCGTGCTC
TCCATTGAGGATGTGTCGCATGAGATGGGTTTCACTCAGGCGCAGCTGGC
TGCTGGGTTGCAGAACATTGCGCTGCAGCGCACGGAGGAGGAAGTTGACG
AGCAGCAGCGCAAGCTGGAGGCATGCCAAGCTGAGCATCTTCGCCTCGTC
GAAGAGATCAAGAAGCTGGAGCCGGAGGTGCAGCGGAAGCGTGGGATCAT
GGCGGCGTTCAAGGGGGAGCTGGCGGGCAATGCGGCAGCGTACAGCGAGA
TTCAGGCGCAGCTGAAGAGGTCCAGGCGCACGCTCTGGCGAGCGTGCAGG
GCTCACGACTTCACGTACGTGTATGACTACGACACTGAAACCGCAATCCT
CACTCCAGTAGAGGAGGGAGAGGACGCCTACACGCGAAAGGAGCGTATTC
GCGCCGGCGATATGTCCTATGATGGTGACGCTGTAGTAGAGCGTCAGCAG
GCTGCACAGGACGCAGCCGATGCAGAGTTTGAAGCTCGGCGCTTTGAGGC
CGAAAATGCAGGTGAAAGTGCAGAGGAGGCGGAGCAGAACGGCGACTACT
AA