Trimin1|350784|estExt_Genemark1.C_Ctg_720017 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350784
Unique NameTrimin1|350784|estExt_Genemark1.C_Ctg_720017
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length274
Homology
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BLAST of jgi.p|Trimin1|350784 vs. uniprot
Match: A0A835YLY6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLY6_9STRA)

HSP 1 Score: 513 bits (1320), Expect = 3.700e-183
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0 
Query:    1 MLTGKALVRMVQPSVRSFIRNISHYNGGRKSITVVMPDSGLVFKHDIDDSADFKRLRKDFAIAGLYRLDDPEDPSCMRRKWEKVEDGGMYQAITPASVMFEDDEGRFKAQDKGLIHEGNEACLRLLQHRYNNLKMREEGLKLKDGPVDVGELDGFLFDDDTKTAVICEAKWLVRVLDKIDLYKTFGVSNGLPKATTVVAVLVGKYFLYDLRKQASNQGIIVVVSGGAGNWRIFGPRNLLLPLLLSXXXXXXXXXXXXXXXXXLPPTAQGHPSS 273
            MLTGKALVRMVQPSVRSFIRNISHYNGGRKSITVVMPDSGLVFKHDIDDSADFKRLRKDFAIAGLYRLDDPEDPSCMRRKWEKVEDGGMYQAITPASVMFEDDEGRFKAQDKGLIHEGNEACLRLLQHRYNNLKMREEGLKLKDGPVDVGELDGFLFDDDTKTAVICEAKWLVRVLDKIDLYKTFGVSNGLPKATTVVAVLVGKYFLYDLRKQASNQGIIVVVSGGAGNWRIFGPRNLLLPLLLSXXXXXXXXXXXXXXXXXLPPTAQGHPSS
Sbjct:    1 MLTGKALVRMVQPSVRSFIRNISHYNGGRKSITVVMPDSGLVFKHDIDDSADFKRLRKDFAIAGLYRLDDPEDPSCMRRKWEKVEDGGMYQAITPASVMFEDDEGRFKAQDKGLIHEGNEACLRLLQHRYNNLKMREEGLKLKDGPVDVGELDGFLFDDDTKTAVICEAKWLVRVLDKIDLYKTFGVSNGLPKATTVVAVLVGKYFLYDLRKQASNQGIIVVVSGGAGNWRIFGPRNLLLPLLLSXXXXXXXXXXXXXXXXXLPPTAQGHPSS 273
[Close]
BLAST of jgi.p|Trimin1|350784 vs. uniprot
Match: A0A835ZDI2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDI2_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.580e-35
Identity = 71/122 (58.20%), Postives = 87/122 (71.31%), Query Frame = 0 
Query:  118 GNEACLRLLQHRYNNLKMREEGLKLKDGPVDVGELDGFLFDDDTKTAVICEAKWLVR------VLDKIDLYKTFGVSNGLPKATTVVAVLVGKYFLYDLRKQASNQGIIVVVSGGAGNWRIF 233
            GNEACL L Q RY+ L++ +EG+KL DG + VGELDG LFDDDT TA+ICE K  VR      V DK++LY  FGV+NGL  AT ++  LVGK F   LR++A  +GIIV+V  GAGNWRIF
Sbjct:   54 GNEACLHLQQQRYSQLRILQEGVKLMDGAIVVGELDGLLFDDDTNTAIICEVKPYVRLEDILEVEDKVELYDKFGVANGLLGATKIMVALVGKGFPQHLRERAFKRGIIVLVLNGAGNWRIF 175
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350784 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YLY6_9STRA3.700e-183100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZDI2_9STRA1.580e-3558.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_72contigContig_72:214816..220308 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350784mRNA_13428Tribonema minus UTEX_B_3156 mRNAContig_72 214816..220308 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350784|estExt_Genemark1.C_Ctg_720017 ID=Trimin1|350784|estExt_Genemark1.C_Ctg_720017|Name=jgi.p|Trimin1|350784|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp
MLTGKALVRMVQPSVRSFIRNISHYNGGRKSITVVMPDSGLVFKHDIDDS
ADFKRLRKDFAIAGLYRLDDPEDPSCMRRKWEKVEDGGMYQAITPASVMF
EDDEGRFKAQDKGLIHEGNEACLRLLQHRYNNLKMREEGLKLKDGPVDVG
ELDGFLFDDDTKTAVICEAKWLVRVLDKIDLYKTFGVSNGLPKATTVVAV
LVGKYFLYDLRKQASNQGIIVVVSGGAGNWRIFGPRNLLLPLLLSALLLL
LLLALLLPALLLLPPTAQGHPSS*
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