mRNA_13427 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170422
Unique NamemRNA_13427
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170422 vs. uniprot
Match: A0A835YP74_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP74_9STRA)

HSP 1 Score: 284 bits (726), Expect = 3.150e-97
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1 
Query:    1 MSTDGTSGAGDLNVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHAWEETKSS 399
            MSTDGTSGAGDLNVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHAWEETKSS
Sbjct:    1 MSTDGTSGAGDLNVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHAWEETKSS 133
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BLAST of jgi.p|Trimin1|170422 vs. uniprot
Match: A0A7S4DGD5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGD5_HETAK)

HSP 1 Score: 179 bits (453), Expect = 6.420e-55
Identity = 80/114 (70.18%), Postives = 92/114 (80.70%), Query Frame = 1 
Query:   37 NVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHA 378
            N+LG  L+ CST+PMTGFYRNG+C C   D GVHSVCA LT++FL YTK +GNDLSTPRPEFGFPGLK GD WCLCASRWK+A +AG AP V LD+TN  T D+VPLE L+ HA
Sbjct:   67 NLLGGALRPCSTAPMTGFYRNGYCACGPGDYGVHSVCASLTEEFLAYTKGRGNDLSTPRPEFGFPGLKPGDRWCLCASRWKEAMEAGCAPKVVLDATNSLTTDIVPLEDLLRHA 180
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BLAST of jgi.p|Trimin1|170422 vs. uniprot
Match: A0A6M0FMV3_9CYAN (DUF2237 domain-containing protein n=18 Tax=Okeania TaxID=1458928 RepID=A0A6M0FMV3_9CYAN)

HSP 1 Score: 170 bits (430), Expect = 3.330e-52
Identity = 76/115 (66.09%), Postives = 93/115 (80.87%), Query Frame = 1 
Query:   34 LNVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHA 378
            LNVLG  L+VC TSPMTGFYR+GFCQ   +D G H +CA +T +FLE+TK +GNDLSTPRPE+ FPGLK GD WCLCASRWK+A D+G AP V L +T+++ L+VVPLE+L EHA
Sbjct:    5 LNVLGEKLEVCCTSPMTGFYRDGFCQTGPSDFGSHVICAAVTAEFLEFTKRRGNDLSTPRPEYSFPGLKPGDRWCLCASRWKEALDSGVAPPVVLSATHQKALEVVPLEVLQEHA 119
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BLAST of jgi.p|Trimin1|170422 vs. uniprot
Match: A0A651EEP6_9RHOB (DUF2237 domain-containing protein n=1 Tax=Rhodobacteraceae bacterium TaxID=1904441 RepID=A0A651EEP6_9RHOB)

HSP 1 Score: 168 bits (425), Expect = 2.050e-51
Identity = 76/118 (64.41%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:   37 NVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHAWEET 390
            NVLG  L+ CST PMTGF+RNG C  +  DRG H+VCA++T +FL ++KA+GNDLSTPRPEFGFPGLK GD WCLCA+RW +A  AG AP V+L ST+RR LDV P+E L EHA + T
Sbjct:   11 NVLGGRLEHCSTDPMTGFFRNGCCDTNDEDRGSHTVCAVMTAEFLAFSKARGNDLSTPRPEFGFPGLKPGDRWCLCAARWMEAYAAGRAPKVRLVSTHRRALDVCPMEALREHALDLT 128
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BLAST of jgi.p|Trimin1|170422 vs. uniprot
Match: A0A8F6TZI9_9RHOB (DUF2237 domain-containing protein n=1 Tax=Gymnodinialimonas ceratoperidinii TaxID=2856823 RepID=A0A8F6TZI9_9RHOB)

HSP 1 Score: 167 bits (422), Expect = 5.500e-51
Identity = 73/115 (63.48%), Postives = 89/115 (77.39%), Query Frame = 1 
Query:   34 LNVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHA 378
            +NV G+PLK CST PMTG++RNG C     D G H+VC ++T +FL Y+K  GNDLSTPRPEFGF GLK GDGWCLCASRW QAA+ G AP V LD+T+RR L+++PLE+L  HA
Sbjct:    7 VNVRGTPLKTCSTDPMTGYFRNGACDTCAEDSGSHTVCCVMTAEFLAYSKYVGNDLSTPRPEFGFAGLKPGDGWCLCASRWMQAAEEGAAPRVNLDATHRRALEIIPLEVLEAHA 121
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BLAST of jgi.p|Trimin1|170422 vs. uniprot
Match: A0A563VM08_9CYAN (Uncharacterized protein n=1 Tax=Hyella patelloides LEGE 07179 TaxID=945734 RepID=A0A563VM08_9CYAN)

HSP 1 Score: 167 bits (422), Expect = 6.240e-51
Identity = 73/114 (64.04%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:   37 NVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHA 378
            NVLG  L++C TSPMTG++RNG C+    D GVH+VCA LT +FLE+TKAQGNDLSTP P +GFPGLK GD WCLCA+RWK+A DAG+AP + L+ST+   L  VPLE+L EH+
Sbjct:    7 NVLGQELQICCTSPMTGYFRNGKCEISAQDYGVHAVCAHLTKEFLEFTKAQGNDLSTPLPAYGFPGLKKGDRWCLCAARWKEALDAGYAPPIVLESTHEAVLSYVPLEVLQEHS 120
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BLAST of jgi.p|Trimin1|170422 vs. uniprot
Match: A0A261KXW2_9CYAN (Uncharacterized protein n=3 Tax=Oscillatoriales TaxID=1150 RepID=A0A261KXW2_9CYAN)

HSP 1 Score: 166 bits (421), Expect = 7.110e-51
Identity = 75/115 (65.22%), Postives = 92/115 (80.00%), Query Frame = 1 
Query:   34 LNVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHA 378
            LNVLG  L++C TSPMTGFYR+G+CQ   +D G H VCA LT DFLE+TK +GNDLSTPR E+ FPGLK GD WCLCASRWK+A D+G AP V L +T+++ L+VVPLE+L EH+
Sbjct:    5 LNVLGEKLEICCTSPMTGFYRDGYCQTGASDFGSHVVCAELTADFLEFTKRRGNDLSTPRLEYSFPGLKPGDRWCLCASRWKEALDSGVAPPVVLSATHQKALEVVPLEVLQEHS 119
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BLAST of jgi.p|Trimin1|170422 vs. uniprot
Match: UPI001CD39523 (DUF2237 domain-containing protein n=1 Tax=Hasllibacter sp. MH4015 TaxID=2854029 RepID=UPI001CD39523)

HSP 1 Score: 166 bits (419), Expect = 1.680e-50
Identity = 74/120 (61.67%), Postives = 91/120 (75.83%), Query Frame = 1 
Query:   25 AGDLNVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHAWE 384
            A  LNV G PL+VCS  P+TGF+R+G C+    DRG H+VCAI+T +FL ++K  GNDLSTPRPE+GF GLK GD WCLCASRW QAA+ G AP VKL +T+RR L+++PLE L  HA E
Sbjct:    6 AASLNVFGDPLEVCSNDPLTGFFRDGSCETCAEDRGSHTVCAIVTAEFLAFSKYVGNDLSTPRPEYGFTGLKPGDSWCLCASRWMQAAEEGAAPPVKLTATHRRALEIIPLETLQTHAVE 125
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BLAST of jgi.p|Trimin1|170422 vs. uniprot
Match: K9YXW9_DACSA (Uncharacterized protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=K9YXW9_DACSA)

HSP 1 Score: 166 bits (419), Expect = 1.790e-50
Identity = 76/125 (60.80%), Postives = 96/125 (76.80%), Query Frame = 1 
Query:   37 NVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHAW----EETKSS 399
            NVLGSPL++C   P TGFYR+G+C   G D G+H VCA +T +FL+YTKAQGNDLSTP+P F FPGLK GDGWCLCASRW++A  AG AP V L+ST+ R L+VV L+ L +HA+    +E+KS+
Sbjct:    6 NVLGSPLQLCCNEPKTGFYRDGYCNTGGQDFGLHVVCAKMTAEFLDYTKAQGNDLSTPKPMFNFPGLKPGDGWCLCASRWEEARQAGVAPPVVLESTHARALEVVSLDHLRQHAYTASDQESKSN 130
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BLAST of jgi.p|Trimin1|170422 vs. uniprot
Match: A0A238J3T4_9RHOB (Uncharacterized protein n=1 Tax=Boseongicola aestuarii TaxID=1470561 RepID=A0A238J3T4_9RHOB)

HSP 1 Score: 164 bits (416), Expect = 4.370e-50
Identity = 74/118 (62.71%), Postives = 94/118 (79.66%), Query Frame = 1 
Query:   34 LNVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCAILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGHAPAVKLDSTNRRTLDVVPLEMLMEHAWEE 387
            +NVLG PLK CST+P+TGF+R+G C     D G H+VCAILT +FL ++K  GNDLSTPRPEF FPGLK GD WCLCASR+ QAA+ G  P + L++T+ +TLD+VPL++LMEHA+EE
Sbjct:    7 INVLGEPLKSCSTNPVTGFFRDGACNTCAEDTGQHTVCAILTAEFLAFSKYLGNDLSTPRPEFMFPGLKPGDRWCLCASRFLQAAEEGAGPRICLEATHSKTLDIVPLDVLMEHAYEE 124
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170422 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YP74_9STRA3.150e-97100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4DGD5_HETAK6.420e-5570.18Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A6M0FMV3_9CYAN3.330e-5266.09DUF2237 domain-containing protein n=18 Tax=Okeania... [more]
A0A651EEP6_9RHOB2.050e-5164.41DUF2237 domain-containing protein n=1 Tax=Rhodobac... [more]
A0A8F6TZI9_9RHOB5.500e-5163.48DUF2237 domain-containing protein n=1 Tax=Gymnodin... [more]
A0A563VM08_9CYAN6.240e-5164.04Uncharacterized protein n=1 Tax=Hyella patelloides... [more]
A0A261KXW2_9CYAN7.110e-5165.22Uncharacterized protein n=3 Tax=Oscillatoriales Ta... [more]
UPI001CD395231.680e-5061.67DUF2237 domain-containing protein n=1 Tax=Haslliba... [more]
K9YXW9_DACSA1.790e-5060.80Uncharacterized protein n=2 Tax=Cyanobacteria TaxI... [more]
A0A238J3T4_9RHOB4.370e-5062.71Uncharacterized protein n=1 Tax=Boseongicola aestu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_72contigContig_72:211356..212915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170422|e_gw1.72.44.1
BRITEko00000
KEGG koko:K09966
Descriptionprotein conserved in bacteria
COG categoryS
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG3651@1|root,COG3651@2|Bacteria,1G6ND@1117|Cyanobacteria
Evalue2.93e-51
Seed ortholog13035.Dacsa_3225
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_001540.1
TranscriptId170744
TrackFilteredModels1
ProteinId170422
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170422gene_13427Tribonema minus UTEX_B_3156 geneContig_72 211356..212915 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13427_1exon_13427_1Tribonema minus UTEX_B_3156 exonContig_72 211356..211538 +
exon_13427_2exon_13427_2Tribonema minus UTEX_B_3156 exonContig_72 212697..212915 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13427CDS_13427Tribonema minus UTEX_B_3156 CDSContig_72 211356..211538 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170422Trimin1|170422|e_gw1.72.44.1Tribonema minus UTEX_B_3156 polypeptideContig_72 211356..212915 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13427 ID=mRNA_13427|Name=jgi.p|Trimin1|170422|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=402bp|location=Sequence derived from alignment at Contig_72:211356..212915+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTACGGACGGTACGAGCGGAGCAGGCGACCTTAACGTCCTGGGCTC
GCCTCTAAAGGTTTGCAGCACCAGCCCGATGACCGGGTTCTACAGAAATG
GCTTCTGTCAGTGCGATGGAGCTGATAGAGGTGTGCACTCAGTTTGCGCC
ATCTTAACAGACGACTTCCTGGAATACACCAAGGCACAAGGGAATGACTT
GAGCACGCCACGCCCTGAATTTGGCTTTCCGGGCCTTAAAGCTGGCGATG
GCTGGTGCTTGTGCGCATCGCGATGGAAGCAAGCAGCAGATGCCGGTCAT
GCTCCTGCCGTCAAGCTGGATAGCACCAACCGCCGAACGCTCGATGTTGT
CCCACTAGAGATGCTTATGGAGCACGCATGGGAGGAGACCAAGTCCAGCT
GA
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protein sequence of jgi.p|Trimin1|170422

>Trimin1|170422|e_gw1.72.44.1 ID=Trimin1|170422|e_gw1.72.44.1|Name=jgi.p|Trimin1|170422|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=134bp
MSTDGTSGAGDLNVLGSPLKVCSTSPMTGFYRNGFCQCDGADRGVHSVCA
ILTDDFLEYTKAQGNDLSTPRPEFGFPGLKAGDGWCLCASRWKQAADAGH
APAVKLDSTNRRTLDVVPLEMLMEHAWEETKSS*
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mRNA from alignment at Contig_72:211356..212915+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13427 ID=mRNA_13427|Name=jgi.p|Trimin1|170422|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1560bp|location=Sequence derived from alignment at Contig_72:211356..212915+ (Tribonema minus UTEX_B_3156 )
ATGTCTACGGACGGTACGAGCGGAGCAGGCGACCTTAACGTCCTGGGCTC
GCCTCTAAAGGTTTGCAGCACCAGCCCGATGACCGGGTTCTACAGAAATG
GCTTCTGTCAGTGCGATGGAGCTGATAGAGGTGTGCACTCAGTTTGCGCC
ATCTTAACAGACGACTTCCTGGAATACACCAAGGTGAGGGGAGATGCTAT
GCTCAACTATGTGGCCACACACACTCATGTCCCGAGGACTTCCGACTGCG
GTGTGTCTGTCATGAAGCAATCCAGTTGCTGGGTGAATCATTAGTTTACA
GAAGCAAAACGCATCACTTACTTGCATCTGCAGTATTGTATAATGCGCTG
GTACCGTCATGTGCTCAATTAGGCCGGTCAGTCAAGAATTAGGAGCGTAC
CGAGCACTGATCCTAATTAGGCCTGGGTGTTGTATTGAGCATTCCTTTTA
AGCCTGGTGGCACTTTTCTGTGGCCACCCTGTTATGGCATGCACAGCATG
TGGTTGCTGGTGAGGCACACGAAGCACATCATGCAAGCAGACGACAAGTG
CCACTGCACTGATGCACACCCCTATTGTACCAAGGTCTGTCTTGAGTCTC
TGGCTGCAGCCTGTGTTGGCCTGATTGGCCTGCTGCTTATGACCCAGTAA
GCAGTGTGACAAGGTCGCCTTTTGTTGAAGCAAATTCAAGAAATCTGAGT
TTCTTCTCGGTTCAACAGAGGCGAACCCATGACTGCATGTCGCTGCTGAT
GGTCGTATAGCGCCCATTTGAAGGTGTTTTGAGGGCCCTGTCCTAATTGC
GCCTGGTGCTTTTATAGCGTGATCCTTATTCAGTGTCCGAGTGCTTTTTT
GGCCATTTTAAATATCTGTCCGACAGGCCTAATTTGGCACATGACGGTAT
AGTATGTACTCCAGTGCCTGATAATCTGAGCAAGGTCACGCTTGCCATGC
GCTGTGCTGAGGCATTGCAGTTGCTCACTTGCAGATTGCATCACCCAGGT
ATTGCTATTTCATGAATTGTGTTTCTCCACAAGATCACTGCAGTGCAGAT
TCTAACCGCTTTGCTCCTCAGCATCTGCAATTGCGACCGCTCACCTCACC
ACTTTGTCATGTTTAAGCGCTGAGGATATGTTTGGTGGCACTTGGGATTT
GGTATCGCTCATGCACATTGTGCAGCCCCGCGTGTGCCCTTGGCATGGTG
GCATGTTTTGGACAGCATATGCCTGTGCTTTCCGGAGACTGTCACTGTCC
GCCAAGAGGCACCTTCTGCGCGCATGGTCTGATAGAGCTGACCCACTTGC
TGTTGCGTTGACCTTCCCATCTTATGCCATTCGCTCGACAGGCACAAGGG
AATGACTTGAGCACGCCACGCCCTGAATTTGGCTTTCCGGGCCTTAAAGC
TGGCGATGGCTGGTGCTTGTGCGCATCGCGATGGAAGCAAGCAGCAGATG
CCGGTCATGCTCCTGCCGTCAAGCTGGATAGCACCAACCGCCGAACGCTC
GATGTTGTCCCACTAGAGATGCTTATGGAGCACGCATGGGAGGAGACCAA
GTCCAGCTGA
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Coding sequence (CDS) from alignment at Contig_72:211356..212915+

>mRNA_13427 ID=mRNA_13427|Name=jgi.p|Trimin1|170422|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=402bp|location=Sequence derived from alignment at Contig_72:211356..212915+ (Tribonema minus UTEX_B_3156 )
ATGTCTACGGACGGTACGAGCGGAGCAGGCGACCTTAACGTCCTGGGCTC
GCCTCTAAAGGTTTGCAGCACCAGCCCGATGACCGGGTTCTACAGAAATG
GCTTCTGTCAGTGCGATGGAGCTGATAGAGGTGTGCACTCAGTTTGCGCC
ATCTTAACAGACGACTTCCTGGAATACACCAAGGCACAAGGGAATGACTT
GAGCACGCCACGCCCTGAATTTGGCTTTCCGGGCCTTAAAGCTGGCGATG
GCTGGTGCTTGTGCGCATCGCGATGGAAGCAAGCAGCAGATGCCGGTCAT
GCTCCTGCCGTCAAGCTGGATAGCACCAACCGCCGAACGCTCGATGTTGT
CCCACTAGAGATGCTTATGGAGCACGCATGGGAGGAGACCAAGTCCAGCT
GA
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