Trimin1|350769|estExt_Genemark1.C_Ctg_710052 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350769
Unique Name	Trimin1\|350769\|estExt_Genemark1.C_Ctg_710052
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1011

Homology

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BLAST of jgi.p|Trimin1|350769 vs. uniprot
Match: A0A835YM39_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM39_9STRA)

HSP 1 Score: 1338 bits (3463), Expect = 0.000e+0
Identity = 1010/1010 (100.00%), Postives = 1010/1010 (100.00%), Query Frame = 0

Query:    1 MDPGAESDSTTSYDEPLPRAEISGQGGGASGGXXAGKLAEQYAFSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALDPDERIKAIAQRYLSTGAIGLAPSSGPAPQSAPHVAAVARPRAPNVGFTGTKGRGKKGASPSPPPGAYGAIQQKHRELIAAVERKDMTAVHKLLTERADPMYKVGDMDALSTAASAGPLPDPAMARSLLRAAVDLRGFAATEASLASGHLKQTLLQGVARALSCQIYGGGRRFTNRELASSVLTSPGVLTDAQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARMTSVTMLDEGLRAACERGDVAAVRLALRAAEAAVRAALEPPQGPEGEEKAVRVAWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSVGLALERLLGAADVEGHSALHWAVKCKHSQLVSELLSAGADAEQRDKVGRTPLHLAADINDKDMLLLLLHGYAARHGGVAATAERMIRADPVQLGGGSQAHMPARQHVATQQFLRRDLQRMCRLLDKTVYGQGKQLRNDELAKSLLDAGEEYAAMLRQAGDPLAPNPPRFITKPPVNGVFPALVLEPVPGNFPPAAQAPPAAAXGAVGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATKVKLPASAVRAXXXXXXXXXXXXXXXXXXLPPAPRAVVPSGGVGNGIGSDVDLELCRAVMDNDVPAVTRALQKGANPAGHAYGGRTPLHEAANRYMATVLINALVDSAGSAHDAALRLQGATFARVDLQRVTRLLGHSVYAHADPSSKSSGGRRLTNRELATNLCDRKHYPLEPLGAPPQPTPGTSGRTMSTAALLACGGSXXXXXXPGPPAPSLSLFGSPPPGVAFGGPXXXXXXXXXQALKRSSEDQDSGGDTKRAKTPLSSEHASQSEGPM 1010
            MDPGAESDSTTSYDEPLPRAEISGQGGGASGGXXAGKLAEQYAFSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALDPDERIKAIAQRYLSTGAIGLAPSSGPAPQSAPHVAAVARPRAPNVGFTGTKGRGKKGASPSPPPGAYGAIQQKHRELIAAVERKDMTAVHKLLTERADPMYKVGDMDALSTAASAGPLPDPAMARSLLRAAVDLRGFAATEASLASGHLKQTLLQGVARALSCQIYGGGRRFTNRELASSVLTSPGVLTDAQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARMTSVTMLDEGLRAACERGDVAAVRLALRAAEAAVRAALEPPQGPEGEEKAVRVAWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSVGLALERLLGAADVEGHSALHWAVKCKHSQLVSELLSAGADAEQRDKVGRTPLHLAADINDKDMLLLLLHGYAARHGGVAATAERMIRADPVQLGGGSQAHMPARQHVATQQFLRRDLQRMCRLLDKTVYGQGKQLRNDELAKSLLDAGEEYAAMLRQAGDPLAPNPPRFITKPPVNGVFPALVLEPVPGNFPPAAQAPPAAAXGAVGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATKVKLPASAVRAXXXXXXXXXXXXXXXXXXLPPAPRAVVPSGGVGNGIGSDVDLELCRAVMDNDVPAVTRALQKGANPAGHAYGGRTPLHEAANRYMATVLINALVDSAGSAHDAALRLQGATFARVDLQRVTRLLGHSVYAHADPSSKSSGGRRLTNRELATNLCDRKHYPLEPLGAPPQPTPGTSGRTMSTAALLACGGSXXXXXXPGPPAPSLSLFGSPPPGVAFGGPXXXXXXXXXQALKRSSEDQDSGGDTKRAKTPLSSEHASQSEGPM
Sbjct:    1 MDPGAESDSTTSYDEPLPRAEISGQGGGASGGXXAGKLAEQYAFSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAALDPDERIKAIAQRYLSTGAIGLAPSSGPAPQSAPHVAAVARPRAPNVGFTGTKGRGKKGASPSPPPGAYGAIQQKHRELIAAVERKDMTAVHKLLTERADPMYKVGDMDALSTAASAGPLPDPAMARSLLRAAVDLRGFAATEASLASGHLKQTLLQGVARALSCQIYGGGRRFTNRELASSVLTSPGVLTDAQRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARMTSVTMLDEGLRAACERGDVAAVRLALRAAEAAVRAALEPPQGPEGEEKAVRVAWTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERSVGLALERLLGAADVEGHSALHWAVKCKHSQLVSELLSAGADAEQRDKVGRTPLHLAADINDKDMLLLLLHGYAARHGGVAATAERMIRADPVQLGGGSQAHMPARQHVATQQFLRRDLQRMCRLLDKTVYGQGKQLRNDELAKSLLDAGEEYAAMLRQAGDPLAPNPPRFITKPPVNGVFPALVLEPVPGNFPPAAQAPPAAAXGAVGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATKVKLPASAVRAXXXXXXXXXXXXXXXXXXLPPAPRAVVPSGGVGNGIGSDVDLELCRAVMDNDVPAVTRALQKGANPAGHAYGGRTPLHEAANRYMATVLINALVDSAGSAHDAALRLQGATFARVDLQRVTRLLGHSVYAHADPSSKSSGGRRLTNRELATNLCDRKHYPLEPLGAPPQPTPGTSGRTMSTAALLACGGSXXXXXXPGPPAPSLSLFGSPPPGVAFGGPXXXXXXXXXQALKRSSEDQDSGGDTKRAKTPLSSEHASQSEGPM 1010

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350769 vs. uniprot

BLAST of jgi.p|Trimin1|350769 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YM39_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002110	Ankyrin repeat	SMART	SM00248	ANK_2a	coord: 508..537 e-value: 0.0021 score: 27.3 coord: 541..570 e-value: 5.7 score: 15.9 coord: 210..239 e-value: 2800.0 score: 1.6 coord: 819..849 e-value: 180.0 score: 10.5
IPR002110	Ankyrin repeat	PFAM	PF12796	Ank_2	coord: 498..564 e-value: 4.8E-8 score: 33.5
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 508..540 score: 12.39561
IPR002110	Ankyrin repeat	PROSITE	PS50088	ANK_REPEAT	coord: 541..562 score: 8.86989
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 785..859 e-value: 2.3E-5 score: 26.4
IPR036770	Ankyrin repeat-containing domain superfamily	GENE3D	1.25.40.20		coord: 401..578 e-value: 1.2E-17 score: 65.9
IPR036770	Ankyrin repeat-containing domain superfamily	SUPERFAMILY	48403	Ankyrin repeat	coord: 215..831
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 983..997
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..142
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 918..947
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 881..1010
None	No IPR available	PANTHER	PTHR24134	ANKYRIN REPEAT-CONTAINING PROTEIN DDB_G0279043	coord: 412..564
None	No IPR available	PROSITE	PS50297	ANK_REP_REGION	coord: 508..540 score: 11.028328
None	No IPR available	PROSITE	PS50297	ANK_REP_REGION	coord: 541..562 score: 8.852755

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_71	contig	Contig_71:455477..472802 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350769	mRNA_12417	Tribonema minus UTEX_B_3156	mRNA	Contig_71 455477..473168 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350769|estExt_Genemark1.C_Ctg_710052 ID=Trimin1|350769|estExt_Genemark1.C_Ctg_710052|Name=jgi.p|Trimin1|350769|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1011bp
MDPGAESDSTTSYDEPLPRAEISGQGGGASGGSGAGKLAEQYAFSDSSED
EGGDDDSDKQPAGNGGSAGAAPGVGGGGGGGGGGANGHGALAAQYEFSDS
SEDEEEDSAPAAAPAARAPADAAAAAAAPAPSPAAALDPDERIKAIAQRY
LSTGAIGLAPSSGPAPQSAPHVAAVARPRAPNVGFTGTKGRGKKGASPSP
PPGAYGAIQQKHRELIAAVERKDMTAVHKLLTERADPMYKVGDMDALSTA
ASAGPLPDPAMARSLLRAAVDLRGFAATEASLASGHLKQTLLQGVARALS
CQIYGGGRRFTNRELASSVLTSPGVLTDAQRAAAASLAPPPAEEIVVPQS
TTAAAAAAAAAALGPAAGIATDAAAGAAAAAAAAANAAAAAATAAAARMT
SVTMLDEGLRAACERGDVAAVRLALRAAEAAVRAALEPPQGPEGEEKAVR
VAWTCERGDVATVRLALRAAEAAVCAALEAPQGPDGEEKAERSVGLALER
LLGAADVEGHSALHWAVKCKHSQLVSELLSAGADAEQRDKVGRTPLHLAA
DINDKDMLLLLLHGYAARHGGVAATAERMIRADPVQLGGGSQAHMPARQH
VATQQFLRRDLQRMCRLLDKTVYGQGKQLRNDELAKSLLDAGEEYAAMLR
QAGDPLAPNPPRFITKPPVNGVFPALVLEPVPGNFPPAAQAPPAAAAGAV
GVAPQPAAPAASAAEPSKGTAAAAAAAAPPSTPAATKVKLPASAVRAAAA
ASAAAKSTIGPPPVVLPPAPRAVVPSGGVGNGIGSDVDLELCRAVMDNDV
PAVTRALQKGANPAGHAYGGRTPLHEAANRYMATVLINALVDSAGSAHDA
ALRLQGATFARVDLQRVTRLLGHSVYAHADPSSKSSGGRRLTNRELATNL
CDRKHYPLEPLGAPPQPTPGTSGRTMSTAALLACGGSSGSSAQPGPPAPS
LSLFGSPPPGVAFGGPAAAAAAVASQALKRSSEDQDSGGDTKRAKTPLSS
EHASQSEGPM*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002110	Ankyrin_rpt
IPR036770	Ankyrin_rpt-contain_sf