mRNA_12384 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170348
Unique NamemRNA_12384
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170348 vs. uniprot
Match: A0A835YM21_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM21_9STRA)

HSP 1 Score: 157 bits (396), Expect = 1.660e-48
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1 
Query:    1 MAMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQVRICRSMRWC 246
            MAMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQVRICRSMRWC
Sbjct:    1 MAMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQVRICRSMRWC 82
[Close]
BLAST of jgi.p|Trimin1|170348 vs. uniprot
Match: D8LJV8_ECTSI (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJV8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 2.540e-16
Identity = 37/74 (50.00%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:    4 AMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQVRI 225
            ++R  V+ GYR L+R R+V F+DD   + ASK +L+ EF KNK VTD +K+A L+KGI EV++ML +N+ Q R+
Sbjct:    3 SLRREVLGGYRRLMRVRVVAFEDDTTMLEASKQQLRIEFNKNKAVTDPSKIAGLIKGINEVEEMLKYNIAQARL 76
[Close]
BLAST of jgi.p|Trimin1|170348 vs. uniprot
Match: F0W5R6_9STRA (Uncharacterized protein AlNc14C22G2231 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W5R6_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.270e-12
Identity = 33/72 (45.83%), Postives = 52/72 (72.22%), Query Frame = 1 
Query:    1 MAMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQ 216
            M+ R+R+++GYR LLR   + F+ D  AI+ S+  L+ +F++NK ++D N L  +LKGIEE + MLLH++VQ
Sbjct:    1 MSTRTRILSGYRRLLRASRLSFEGDTFAIKQSRATLRNQFVENKAISDPNALEDVLKGIEEAESMLLHHIVQ 72
[Close]
BLAST of jgi.p|Trimin1|170348 vs. uniprot
Match: A0A7S1U0R5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0R5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.940e-11
Identity = 32/71 (45.07%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:    4 AMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQ 216
            A R + + G+R LLR R V+F+ D  A+ AS+++L+ +F  N++ TDA K+A +L+GI+EV+ M+L+N VQ
Sbjct:    3 ATRLQALHGFRRLLRARKVLFRGDANALAASQLELRSQFQTNRHETDAAKIAEMLRGIDEVEDMMLNNFVQ 73
[Close]
BLAST of jgi.p|Trimin1|170348 vs. uniprot
Match: UPI0014257121 (complex III assembly factor LYRM7-like isoform X2 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014257121)

HSP 1 Score: 62.4 bits (150), Expect = 8.330e-11
Identity = 31/70 (44.29%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:    7 MRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQ 216
            MR +V+A +R+L RTR +VFKDD+R + A+++K+ EEF KNK++ D ++++ L+K  E+ +  L   VVQ
Sbjct:    1 MREKVLATFRALHRTRKLVFKDDERVLNAARLKINEEFKKNKSIEDTDEISKLVKIGEDAELFLRKKVVQ 70
[Close]
BLAST of jgi.p|Trimin1|170348 vs. uniprot
Match: A0A3R7JTW5_9STRA (Complex1_LYR_dom domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JTW5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.090e-10
Identity = 31/68 (45.59%), Postives = 45/68 (66.18%), Query Frame = 1 
Query:   19 VMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQVR 222
            V++GYR LLR     F+DD  A   +++ L+E F+ N  V+D  +L  L+KGI+E + MLLHN+VQ R
Sbjct:    9 VLSGYRRLLRASRQAFRDDAYATNQARLALRENFLANSQVSDREQLQDLVKGIDEAESMLLHNIVQGR 76
[Close]
BLAST of jgi.p|Trimin1|170348 vs. uniprot
Match: W2Z1Q3_PHYPR (Complex1_LYR_dom domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=W2Z1Q3_PHYPR)

HSP 1 Score: 62.4 bits (150), Expect = 1.480e-10
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 MAMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQVR 222
            M++R +V+ GYR LLR     F+ D  A++ ++  L++ FM N  V+D  +L  L+KGI+E + MLLHN+VQ R
Sbjct:    1 MSVRVQVLGGYRRLLRASRQAFRGDAYALQQARAALRDNFMANSQVSDKEQLDELVKGIDEAESMLLHNIVQGR 74
[Close]
BLAST of jgi.p|Trimin1|170348 vs. uniprot
Match: W2GJG5_PHYPR (Complex1_LYR_dom domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=W2GJG5_PHYPR)

HSP 1 Score: 62.4 bits (150), Expect = 1.480e-10
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 MAMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQVR 222
            M++R +V+ GYR LLR     F+ D  A++ ++  L++ FM N  V+D  +L  L+KGI+E + MLLHN+VQ R
Sbjct:    1 MSVRVQVLGGYRRLLRASRQAFRGDAYALQQARAALRDNFMANSQVSDKEQLDELVKGIDEAESMLLHNIVQGR 74
[Close]
BLAST of jgi.p|Trimin1|170348 vs. uniprot
Match: A0A2D0SM88_ICTPU (Complex III assembly factor LYRM7 n=5 Tax=Siluroidei TaxID=1489793 RepID=A0A2D0SM88_ICTPU)

HSP 1 Score: 61.6 bits (148), Expect = 1.710e-10
Identity = 31/72 (43.06%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 MAMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQ 216
            M  R +V+  +++L RTR+ VFKDDDRA+ A+++K+ EEF KNKN T    +  ++K    V+ +L  NV+Q
Sbjct:    1 MGTRLKVLRTFKALHRTRMTVFKDDDRALTAARLKINEEFKKNKNETSEENIQQMIKMSRSVETILRENVLQ 72
[Close]
BLAST of jgi.p|Trimin1|170348 vs. uniprot
Match: A0A7J6AG04_AMEME (Uncharacterized protein n=1 Tax=Ameiurus melas TaxID=219545 RepID=A0A7J6AG04_AMEME)

HSP 1 Score: 62.0 bits (149), Expect = 1.830e-10
Identity = 30/72 (41.67%), Postives = 48/72 (66.67%), Query Frame = 1 
Query:    1 MAMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDANKLASLLKGIEEVQQMLLHNVVQ 216
            M  R +V+  +++L RTR+ VFKDDDRA+ A+++K+ EEF KNKN T    +  ++K    V+ +L  N++Q
Sbjct:    1 MGTRLKVLRTFKALHRTRMTVFKDDDRALTAARLKINEEFKKNKNETSKENIQQMIKMSRSVETILRENIIQ 72
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170348 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YM21_9STRA1.660e-48100.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
D8LJV8_ECTSI2.540e-1650.00Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
F0W5R6_9STRA2.270e-1245.83Uncharacterized protein AlNc14C22G2231 n=1 Tax=Alb... [more]
A0A7S1U0R5_9STRA1.940e-1145.07Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
UPI00142571218.330e-1144.29complex III assembly factor LYRM7-like isoform X2 ... [more]
A0A3R7JTW5_9STRA1.090e-1045.59Complex1_LYR_dom domain-containing protein n=1 Tax... [more]
W2Z1Q3_PHYPR1.480e-1043.24Complex1_LYR_dom domain-containing protein n=5 Tax... [more]
W2GJG5_PHYPR1.480e-1043.24Complex1_LYR_dom domain-containing protein n=8 Tax... [more]
A0A2D0SM88_ICTPU1.710e-1043.06Complex III assembly factor LYRM7 n=5 Tax=Siluroid... [more]
A0A7J6AG04_AMEME1.830e-1041.67Uncharacterized protein n=1 Tax=Ameiurus melas Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:198799..199712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170348|e_gw1.71.80.1
BRITEko00000,ko03029
KEGG koko:K18170
DescriptionComplex 1 protein (LYR family)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2C4TM@1|root,2S0IW@2759|Eukaryota
Evalue3.73e-13
Seed ortholog653948.CCA16457
Hectar predicted targeting categorymitochondrion
TranscriptId170670
TrackFilteredModels1
ProteinId170348
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170348gene_12384Tribonema minus UTEX_B_3156 geneContig_71 198799..199712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170348Trimin1|170348|e_gw1.71.80.1Tribonema minus UTEX_B_3156 polypeptideContig_71 198799..199712 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12384_2exon_12384_2Tribonema minus UTEX_B_3156 exonContig_71 198799..198958 -
exon_12384_1exon_12384_1Tribonema minus UTEX_B_3156 exonContig_71 199624..199712 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12384CDS_12384Tribonema minus UTEX_B_3156 CDSContig_71 199624..199712 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12384 ID=mRNA_12384|Name=jgi.p|Trimin1|170348|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_71:198799..199712- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGATGCGGTCACGAGTCATGGCGGGCTACCGCAGTTTGCTGCGCAC
CAGGCTGGTGGTGTTCAAGGACGATGACCGGGCCATCAGGGCATCAAAGA
TGAAGCTGAAGGAAGAGTTTATGAAGAACAAGAACGTGACGGATGCCAAC
AAACTGGCGTCATTGCTCAAGGGCATTGAGGAGGTTCAGCAGATGCTACT
ACACAACGTCGTACAGGTGCGCATTTGTCGCAGTATGCGATGGTGCTGA
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protein sequence of jgi.p|Trimin1|170348

>Trimin1|170348|e_gw1.71.80.1 ID=Trimin1|170348|e_gw1.71.80.1|Name=jgi.p|Trimin1|170348|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=83bp
MAMRSRVMAGYRSLLRTRLVVFKDDDRAIRASKMKLKEEFMKNKNVTDAN
KLASLLKGIEEVQQMLLHNVVQVRICRSMRWC*
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mRNA from alignment at Contig_71:198799..199712-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12384 ID=mRNA_12384|Name=jgi.p|Trimin1|170348|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=914bp|location=Sequence derived from alignment at Contig_71:198799..199712- (Tribonema minus UTEX_B_3156 )
ATGGCGATGCGGTCACGAGTCATGGCGGGCTACCGCAGTTTGCTGCGCAC
CAGGCTGGTGGTGTTCAAGGACGATGACCGGGCCATCAGGTCCGTTCTCT
CGTGATGTATGCATGATGTTCGATGCCGGCGCAGCTATGTGAATCAGGTC
CGTTAGAGGCTTGATGTGCAGATGACAACATCAGCGGCAACTGAGAATGC
GTCATCAACCAGTAACAGCCAGAGTCAACAGTTACTTTCAACGATTAGCT
GCCATTACTGCGATCACGGGGGGCTGCAAAACACCCTGTCTCAAGCAGGG
TGTGACACCTGCACTTTGCATGTGTTGAGCAGTGCTGCTCCGCTTCAGCT
AGTTGGGCAGGTGTGATGTATAGTACACATTATGACACAGAGTATCACTG
GGCAGTACTAAACAAAACGAGGTGCCTCCCCCGAATATGATTGCAGCTGG
AGCTGCTGGCGCGCCGTTTGGGCAGACAATGTTAAATTGCGTGGTAGCAC
TTGTTGCGTGCTGCTTACATCATCGCGTCGTCACGTTTCACACAAGTCAA
ATCACTCTGCCTGCAGTCCGCGCATGCACTAGCGTCACAGCCTCCTGTTC
CGCATTCACAAACTGACTACGCTGCCAGTGAGTTGCAATTATTGTGTTTC
GCTTTCGCATCTCATCTTTGATGACTGCCACATGAACAACAGCAGCTTTC
ATTCATCGACAGATCTGACTGTGTGGGCGGGCATTCTATGTATGTATGAC
ACAGGGCATCAAAGATGAAGCTGAAGGAAGAGTTTATGAAGAACAAGAAC
GTGACGGATGCCAACAAACTGGCGTCATTGCTCAAGGGCATTGAGGAGGT
TCAGCAGATGCTACTACACAACGTCGTACAGGTGCGCATTTGTCGCAGTA
TGCGATGGTGCTGA
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Coding sequence (CDS) from alignment at Contig_71:198799..199712-

>mRNA_12384 ID=mRNA_12384|Name=jgi.p|Trimin1|170348|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=249bp|location=Sequence derived from alignment at Contig_71:198799..199712- (Tribonema minus UTEX_B_3156 )
ATGGCGATGCGGTCACGAGTCATGGCGGGCTACCGCAGTTTGCTGCGCAC
CAGGCTGGTGGTGTTCAAGGACGATGACCGGGCCATCAGGGCATCAAAGA
TGAAGCTGAAGGAAGAGTTTATGAAGAACAAGAACGTGACGGATGCCAAC
AAACTGGCGTCATTGCTCAAGGGCATTGAGGAGGTTCAGCAGATGCTACT
ACACAACGTCGTACAGGTGCGCATTTGTCGCAGTATGCGATGGTGCTGA
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