Trimin1|170326|e_gw1.71.66.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|170326
Unique NameTrimin1|170326|e_gw1.71.66.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length204
Homology
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BLAST of jgi.p|Trimin1|170326 vs. uniprot
Match: A0A836C9K2_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9K2_9STRA)

HSP 1 Score: 350 bits (898), Expect = 3.670e-121
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0 
Query:    1 MVQDGHKLELSTCHQALNIMARSGDMVRPLLIIMLMKQVGLTPDMQAYTLAVRACRGLQAISVANGLLAEAKVAXXXXXXXXXXXXXXXXXXXXDVDRALELFHEMEATPSCAFMVKDWRIWSNLMAALNAGGQPEKVSEKFEEMVKRGIEPSVCIYSHTLAAHAARGHHAQVHDLLARMPALGAADKGECHASIISAYASTD 203
            MVQDGHKLELSTCHQALNIMARSGDMVRPLLIIMLMKQVGLTPDMQAYTLAVRACRGLQAISVANGLLAEAKVAXXXXXXXXXXXXXXXXXXXXDVDRALELFHEMEATPSCAFMVKDWRIWSNLMAALNAGGQPEKVSEKFEEMVKRGIEPSVCIYSHTLAAHAARGHHAQVHDLLARMPALGAADKGECHASIISAYASTD
Sbjct:    1 MVQDGHKLELSTCHQALNIMARSGDMVRPLLIIMLMKQVGLTPDMQAYTLAVRACRGLQAISVANGLLAEAKVAXXXXXXXXXXXXXXXXXXXXDVDRALELFHEMEATPSCAFMVKDWRIWSNLMAALNAGGQPEKVSEKFEEMVKRGIEPSVCIYSHTLAAHAARGHHAQVHDLLARMPALGAADKGECHASIISAYASTD 203
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170326 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C9K2_9STRA3.670e-121100.00PPR_long domain-containing protein n=1 Tax=Tribone... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 58..203
e-value: 2.2E-21
score: 78.6
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 1..53
e-value: 0.0026
score: 17.8
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 121..154
e-value: 8.5E-5
score: 20.5
coord: 82..108
e-value: 0.0016
score: 16.5
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 79..109
score: 8.70333
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 118..152
score: 9.97484
IPR033443Pentacotripeptide-repeat region of PRORPPFAMPF17177PPR_longcoord: 60..180
e-value: 5.6E-7
score: 29.1
NoneNo IPR availablePANTHERPTHR47933PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIALcoord: 4..184

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:543638..544249 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170326mRNA_12423Tribonema minus UTEX_B_3156 mRNAContig_71 543638..544249 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|170326|e_gw1.71.66.1 ID=Trimin1|170326|e_gw1.71.66.1|Name=jgi.p|Trimin1|170326|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
MVQDGHKLELSTCHQALNIMARSGDMVRPLLIIMLMKQVGLTPDMQAYTL
AVRACRGLQAISVANGLLAEAKVAGLAPDTGMYSAMIKACRPSQDVDRAL
ELFHEMEATPSCAFMVKDWRIWSNLMAALNAGGQPEKVSEKFEEMVKRGI
EPSVCIYSHTLAAHAARGHHAQVHDLLARMPALGAADKGECHASIISAYA
STD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
IPR033443PPR_long