mRNA_12365 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170324
Unique NamemRNA_12365
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170324 vs. uniprot
Match: A0A835YV81_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV81_9STRA)

HSP 1 Score: 180 bits (457), Expect = 4.310e-51
Identity = 315/315 (100.00%), Postives = 315/315 (100.00%), Query Frame = 1 
Query:    1 CRADGCEKRSAYGIIGGGPQWCVAHKASAMGHVTSRHCELGRKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGYDFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYXXHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHGHFLHNCRGSICHSSNIGNRSVEEMFTDATVFAVWSGGDELPTFMRAIQQRFNWDEVVMPV 945
            CRADGCEKRSAYGIIGGGPQWCVAHKASAMGHVTSRHCELGRKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGYDFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYXXHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHGHFLHNCRGSICHSSNIGNRSVEEMFTDATVFAVWSGGDELPTFMRAIQQRFNWDEVVMPV
Sbjct:    1 CRADGCEKRSAYGIIGGGPQWCVAHKASAMGHVTSRHCELGRKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGYDFGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYXXHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEHGHFLHNCRGSICHSSNIGNRSVEEMFTDATVFAVWSGGDELPTFMRAIQQRFNWDEVVMPV 315
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BLAST of jgi.p|Trimin1|170324 vs. uniprot
Match: A0A835YYI8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYI8_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.010e-16
Identity = 39/57 (68.42%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:  772 LHNCRGSICHSSNIGNRSVEEMFTDATVFAVWSGGDELPTFMRAIQQRFNWDEVVMP 942
            L +CRG ICH +NIG RSVEE+F DAT F VWSGGD+LP F+ AI QR  W+EVVMP
Sbjct:  461 LRHCRGEICHINNIGTRSVEEIFPDATAFVVWSGGDDLPKFIEAISQRLKWEEVVMP 517
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BLAST of jgi.p|Trimin1|170324 vs. uniprot
Match: A0A836CFL9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFL9_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 6.880e-16
Identity = 38/44 (86.36%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    1 CRADGCEKRSAYGIIGGGPQWCVAHKASAMGHVTSRHCELGRKQ 132
            CRADGCEK SAYGIIGGGPQWCVAHKAS M HVT +HCEL RKQ
Sbjct:   22 CRADGCEKGSAYGIIGGGPQWCVAHKASDMEHVTGKHCELCRKQ 65
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BLAST of jgi.p|Trimin1|170324 vs. uniprot
Match: A0A835ZFF0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFF0_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.880e-11
Identity = 32/63 (50.79%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:  757 EHGHFLHNCRGSICHSSNIGNRSVEEMFTDATVFAVWSGGDELPTFMRAIQQRFNWDEV-VMP 942
            +HG  L  C G ICH +NIG RS+EEMF DAT F  W+GGD++ TF+RA+  R  + ++ +MP
Sbjct:  387 KHGRTLRYCLGPICHINNIGTRSIEEMFPDATAFIAWTGGDDVDTFIRAVGHRLKFGDLQIMP 449
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BLAST of jgi.p|Trimin1|170324 vs. uniprot
Match: A0A835ZBU2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBU2_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 4.350e-10
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 1 
Query:  760 HGHFLHNCRGSICHSSNIGNRSVEEMFTDATVFAVWSGGDELPTFMRAIQQRFNWDEV-VMP 942
            HG  L +C G ICH +NIG RS+EEMF DAT F  W+GGD++ TF+ A+  R    ++ +MP
Sbjct:  343 HGRRLEHCLGQICHINNIGTRSIEEMFPDATAFIQWTGGDDIETFIHALSHRLQLGDLCIMP 404
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BLAST of jgi.p|Trimin1|170324 vs. uniprot
Match: A0A835Z3Z4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Z4_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 1.100e-8
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:  757 EHGHFLHNCRGSICHSSNIGNRSVEEMFTDATVFAVWSGGDELPTFMRAIQQRFNWDEV-VMP 942
            EHG  L  C G+ICH +NIG RS++E+F DAT + VWSG DE+  F+ A+  R  + +V VMP
Sbjct:  530 EHGRRLEYCLGAICHINNIGARSLQEIFPDATAYIVWSGIDEVDGFITAVNHRLQFGDVLVMP 592
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BLAST of jgi.p|Trimin1|170324 vs. uniprot
Match: A0A835ZAP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAP8_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 4.150e-8
Identity = 26/40 (65.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:    1 CRADGCEKRSAYGIIGGGPQWCVAHKASAMGHVTSRHCEL 120
            CRA+GCEKRS YGIIGGG QWC+ HK   M  V ++ CEL
Sbjct:   78 CRAEGCEKRSTYGIIGGGAQWCITHKEEGMEDVINKRCEL 117
[Close]
BLAST of jgi.p|Trimin1|170324 vs. uniprot
Match: A0A835Z3T1_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3T1_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 6.300e-5
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1 
Query:    1 CRADGCEKRSAYGIIGGGPQWCVAHKASAMGHVTSRHCE 117
            CRA+GCEKRSAYGI G G Q C+ H    M +V S+ CE
Sbjct:   61 CRAEGCEKRSAYGITGAGAQRCITHNEEGMENVISKRCE 99
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170324 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835YV81_9STRA4.310e-51100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YYI8_9STRA1.010e-1668.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CFL9_9STRA6.880e-1686.36Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZFF0_9STRA7.880e-1150.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZBU2_9STRA4.350e-1050.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3Z4_9STRA1.100e-850.79Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZAP8_9STRA4.150e-865.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z3T1_9STRA6.300e-558.97EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:33789..34833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170324|e_gw1.71.28.1
Hectar predicted targeting categoryother localisation
TranscriptId170646
TrackFilteredModels1
ProteinId170324
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170324gene_12365Tribonema minus UTEX_B_3156 geneContig_71 33789..34833 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12365_1exon_12365_1Tribonema minus UTEX_B_3156 exonContig_71 33789..34042 +
exon_12365_2exon_12365_2Tribonema minus UTEX_B_3156 exonContig_71 34140..34833 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12365CDS_12365Tribonema minus UTEX_B_3156 CDSContig_71 33789..34042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170324Trimin1|170324|e_gw1.71.28.1Tribonema minus UTEX_B_3156 polypeptideContig_71 33789..34833 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12365 ID=mRNA_12365|Name=jgi.p|Trimin1|170324|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=948bp|location=Sequence derived from alignment at Contig_71:33789..34833+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCCGGGCAGATGGGTGTGAGAAGAGATCTGCATATGGCATCATTGGCGG
AGGACCGCAATGGTGCGTAGCACATAAGGCAAGTGCCATGGGGCATGTGA
CCAGTAGGCACTGTGAGCTCGGTCGTAAGCAGTCCAGCTTTGGGAGAGTG
TGGCTTCAGCCTATACGCTGCTCAGATCACAAGGAGGACTACATGGAGGA
CGTAGTGAACAGGCGCTGCGAGCTCTGCAGCAAGCAACCTAGCTTGGGGT
ATGATTTTGGGTACGACTGGATGAGCCCGCTGCGCTGTGCAGATCACAGA
CACGATGATATGGACAATGTGGTCAGCAAGCAATGTGAGTCGTGCTCCAC
GCAGCCCAGCTACGGGTACCATTGGATGCGTCCACTGCGCTGCATAGATC
ACAGAGACGACGATATGGACAATGTGGTCAGCAAGCAGTGTGCTCTGTGC
TCGACGCGACCCAGCTTTGGCTTTGAATGGAAGCGTCCACTCCGCTGCTC
GGATCACAGGGAAGAGAACATGGAAAACGTCGTGGACAAGACATGTGAGC
TCTGCAGCAGGCAACCCAGCCTAGGGTATGACTGGCAGCGCCCACTGCGT
TGCGCAGCTCATAAGGAGCAGGATATGACCAATGTGGTTGACAAGAGTTG
TGATCTCTGCACAAAAAGTGCAAGCCTTGGGTATGACTGGAGGCGGCCAC
TGCGCTGTGCAGATCACAAAGCAGAAGGCATGCACAATGTGGTAACTCAG
AGGTGTGAGCACGGTCATTTTCTGCACAATTGCCGTGGCTCCATTTGCCA
CAGTAGCAACATCGGGAACCGATCAGTTGAGGAGATGTTCACAGATGCAA
CAGTCTTTGCTGTCTGGAGTGGTGGAGATGAGCTGCCCACGTTTATGCGA
GCCATTCAACAGCGCTTCAACTGGGATGAGGTTGTTATGCCCGTTTGA
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protein sequence of jgi.p|Trimin1|170324

>Trimin1|170324|e_gw1.71.28.1 ID=Trimin1|170324|e_gw1.71.28.1|Name=jgi.p|Trimin1|170324|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=316bp
CRADGCEKRSAYGIIGGGPQWCVAHKASAMGHVTSRHCELGRKQSSFGRV
WLQPIRCSDHKEDYMEDVVNRRCELCSKQPSLGYDFGYDWMSPLRCADHR
HDDMDNVVSKQCESCSTQPSYGYHWMRPLRCIDHRDDDMDNVVSKQCALC
STRPSFGFEWKRPLRCSDHREENMENVVDKTCELCSRQPSLGYDWQRPLR
CAAHKEQDMTNVVDKSCDLCTKSASLGYDWRRPLRCADHKAEGMHNVVTQ
RCEHGHFLHNCRGSICHSSNIGNRSVEEMFTDATVFAVWSGGDELPTFMR
AIQQRFNWDEVVMPV*
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mRNA from alignment at Contig_71:33789..34833+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12365 ID=mRNA_12365|Name=jgi.p|Trimin1|170324|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1045bp|location=Sequence derived from alignment at Contig_71:33789..34833+ (Tribonema minus UTEX_B_3156 )
TGCCGGGCAGATGGGTGTGAGAAGAGATCTGCATATGGCATCATTGGCGG
AGGACCGCAATGGTGCGTAGCACATAAGGCAAGTGCCATGGGGCATGTGA
CCAGTAGGCACTGTGAGCTCGGTCGTAAGCAGTCCAGCTTTGGGAGAGTG
TGGCTTCAGCCTATACGCTGCTCAGATCACAAGGAGGACTACATGGAGGA
CGTAGTGAACAGGCGCTGCGAGCTCTGCAGCAAGCAACCTAGCTTGGGGT
ATGAGTGGAAACGCCCACTGCGCGGCGATGATCATAAGGAACAAGGTATG
TGCAATGTAGTAAGTAGACAAGAGGTGTGGGCTGTGTAGCACACTGGCAA
GTTTTGGGTACGACTGGATGAGCCCGCTGCGCTGTGCAGATCACAGACAC
GATGATATGGACAATGTGGTCAGCAAGCAATGTGAGTCGTGCTCCACGCA
GCCCAGCTACGGGTACCATTGGATGCGTCCACTGCGCTGCATAGATCACA
GAGACGACGATATGGACAATGTGGTCAGCAAGCAGTGTGCTCTGTGCTCG
ACGCGACCCAGCTTTGGCTTTGAATGGAAGCGTCCACTCCGCTGCTCGGA
TCACAGGGAAGAGAACATGGAAAACGTCGTGGACAAGACATGTGAGCTCT
GCAGCAGGCAACCCAGCCTAGGGTATGACTGGCAGCGCCCACTGCGTTGC
GCAGCTCATAAGGAGCAGGATATGACCAATGTGGTTGACAAGAGTTGTGA
TCTCTGCACAAAAAGTGCAAGCCTTGGGTATGACTGGAGGCGGCCACTGC
GCTGTGCAGATCACAAAGCAGAAGGCATGCACAATGTGGTAACTCAGAGG
TGTGAGCACGGTCATTTTCTGCACAATTGCCGTGGCTCCATTTGCCACAG
TAGCAACATCGGGAACCGATCAGTTGAGGAGATGTTCACAGATGCAACAG
TCTTTGCTGTCTGGAGTGGTGGAGATGAGCTGCCCACGTTTATGCGAGCC
ATTCAACAGCGCTTCAACTGGGATGAGGTTGTTATGCCCGTTTGA
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Coding sequence (CDS) from alignment at Contig_71:33789..34833+

>mRNA_12365 ID=mRNA_12365|Name=jgi.p|Trimin1|170324|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=948bp|location=Sequence derived from alignment at Contig_71:33789..34833+ (Tribonema minus UTEX_B_3156 )
TGCCGGGCAGATGGGTGTGAGAAGAGATCTGCATATGGCATCATTGGCGG
AGGACCGCAATGGTGCGTAGCACATAAGGCAAGTGCCATGGGGCATGTGA
CCAGTAGGCACTGTGAGCTCGGTCGTAAGCAGTCCAGCTTTGGGAGAGTG
TGGCTTCAGCCTATACGCTGCTCAGATCACAAGGAGGACTACATGGAGGA
CGTAGTGAACAGGCGCTGCGAGCTCTGCAGCAAGCAACCTAGCTTGGGGT
ATGATTTTGGGTACGACTGGATGAGCCCGCTGCGCTGTGCAGATCACAGA
CACGATGATATGGACAATGTGGTCAGCAAGCAATGTGAGTCGTGCTCCAC
GCAGCCCAGCTACGGGTACCATTGGATGCGTCCACTGCGCTGCATAGATC
ACAGAGACGACGATATGGACAATGTGGTCAGCAAGCAGTGTGCTCTGTGC
TCGACGCGACCCAGCTTTGGCTTTGAATGGAAGCGTCCACTCCGCTGCTC
GGATCACAGGGAAGAGAACATGGAAAACGTCGTGGACAAGACATGTGAGC
TCTGCAGCAGGCAACCCAGCCTAGGGTATGACTGGCAGCGCCCACTGCGT
TGCGCAGCTCATAAGGAGCAGGATATGACCAATGTGGTTGACAAGAGTTG
TGATCTCTGCACAAAAAGTGCAAGCCTTGGGTATGACTGGAGGCGGCCAC
TGCGCTGTGCAGATCACAAAGCAGAAGGCATGCACAATGTGGTAACTCAG
AGGTGTGAGCACGGTCATTTTCTGCACAATTGCCGTGGCTCCATTTGCCA
CAGTAGCAACATCGGGAACCGATCAGTTGAGGAGATGTTCACAGATGCAA
CAGTCTTTGCTGTCTGGAGTGGTGGAGATGAGCTGCCCACGTTTATGCGA
GCCATTCAACAGCGCTTCAACTGGGATGAGGTTGTTATGCCCGTTTGA
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