Trimin1|170306|e_gw1.71.70.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|170306
Unique NameTrimin1|170306|e_gw1.71.70.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length328
Homology
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BLAST of jgi.p|Trimin1|170306 vs. uniprot
Match: A0A835YLA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.940e-33
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0 
Query:    1 MHIKTIQRERETCYTPQIWLPGLRQTVPVACTWPDYDQTFSTQQNMERHIRAVHEGVKDV 60
            MHIKTIQRERETCYTPQIWLPGLRQTVPVACTWPDYDQTFSTQQNMERHIRAVHEGVKDV
Sbjct:    1 MHIKTIQRERETCYTPQIWLPGLRQTVPVACTWPDYDQTFSTQQNMERHIRAVHEGVKDV 60
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170306 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YLA8_9STRA1.940e-33100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 122..147
e-value: 0.066
score: 22.3
coord: 29..54
e-value: 18.0
score: 11.1
coord: 184..206
e-value: 21.0
score: 10.4
coord: 247..272
e-value: 0.0058
score: 25.8
coord: 278..303
e-value: 0.0036
score: 26.5
coord: 153..178
e-value: 0.0058
score: 25.8
coord: 215..240
e-value: 0.066
score: 22.3
coord: 60..85
e-value: 0.15
score: 21.1
coord: 91..116
e-value: 0.015
score: 24.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 62..85
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 93..116
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 249..272
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 124..147
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 280..303
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 217..240
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 155..178
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 247..277
score: 10.013613
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 122..152
score: 10.491625
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 60..90
score: 10.844938
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 215..245
score: 10.491625
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 278..308
score: 10.304577
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 153..183
score: 10.013613
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 91..121
score: 9.431686
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 120..150
e-value: 1.5E-6
score: 29.8
coord: 275..310
e-value: 1.8E-7
score: 32.7
coord: 87..119
e-value: 1.3E-6
score: 30.0
coord: 151..182
e-value: 1.6E-6
score: 29.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 248..274
e-value: 1.8E-5
score: 26.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 183..244
e-value: 4.0E-7
score: 31.9
coord: 22..86
e-value: 2.0E-8
score: 36.1
NoneNo IPR availablePANTHERPTHR46179ZINC FINGER PROTEINcoord: 216..324
coord: 25..131
coord: 120..292
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 257..315
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 194..245
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 132..189
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 39..95

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:419620..420791 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170306mRNA_12410Tribonema minus UTEX_B_3156 mRNAContig_71 419620..420791 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|170306|e_gw1.71.70.1 ID=Trimin1|170306|e_gw1.71.70.1|Name=jgi.p|Trimin1|170306|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MHIKTIQRERETCYTPQIWLPGLRQTVPVACTWPDYDQTFSTQQNMERHI
RAVHEGVKDVACTWTECKQTFSTKHIMQQHVRAVHEGVKDVACTWPDCDC
MFTSKGNMQQHVTAVHEGVKDVACTWTDCAQMFTTIGNMHRHVRAVHEGV
KDVACTWPDCDCMFATKGSMQQHVRAVHEGVKDVACTWPDCDCMFATKGS
MQQHVRAVQDGVKDVACTWTDCAQMFTTIGNMHRHVRAVHEGVKDDVACT
WPDCDCMFATKGSMQQHVRAVHEGVKDVACTWPDCDCMFTSKGNMQQHVR
AVHEGVKDVACTWTDCAQMFKSNGEMQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf