mRNA_12410 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|170306
Unique Name	mRNA_12410
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|170306 vs. uniprot
Match: A0A835YLA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA8_9STRA)

HSP 1 Score: 135 bits (339), Expect = 1.940e-33
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1

Query:    1 MHIKTIQRERETCYTPQIWLPGLRQTVPVACTWPDYDQTFSTQQNMERHIRAVHEGVKDV 180
            MHIKTIQRERETCYTPQIWLPGLRQTVPVACTWPDYDQTFSTQQNMERHIRAVHEGVKDV
Sbjct:    1 MHIKTIQRERETCYTPQIWLPGLRQTVPVACTWPDYDQTFSTQQNMERHIRAVHEGVKDV 60

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|170306 vs. uniprot

BLAST of jgi.p|Trimin1|170306 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YLA8_9STRA	1.940e-33	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_71	contig	Contig_71:419620..420791 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|170306\|e_gw1.71.70.1
Hectar predicted targeting category	other localisation
TranscriptId	170628
Track	FilteredModels1
ProteinId	170306

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|170306	gene_12410	Tribonema minus UTEX_B_3156	gene	Contig_71 419620..420791 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12410_1	exon_12410_1	Tribonema minus UTEX_B_3156	exon	Contig_71 419620..420354 +
exon_12410_2	exon_12410_2	Tribonema minus UTEX_B_3156	exon	Contig_71 420543..420791 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12410	CDS_12410	Tribonema minus UTEX_B_3156	CDS	Contig_71 419620..420354 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|170306	Trimin1\|170306\|e_gw1.71.70.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_71 419620..420791 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_71:419620..420791+
coding sequence from alignment at Contig_71:419620..420791+

spliced messenger RNA

>mRNA_12410 ID=mRNA_12410|Name=jgi.p|Trimin1|170306|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_71:419620..420791+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCATATAAAGACTATACAGAGAGAGAGAGAGACATGTTACACACCTCA
AATTTGGCTGCCGGGTTTGCGTCAAACTGTGCCGGTGGCGTGCACTTGGC
CTGACTATGACCAGACATTTTCAACCCAGCAAAACATGGAGAGACACATC
AGGGCAGTTCACGAAGGCGTGAAGGATGTGGCCTGCACATGGACGGAGTG
TAAACAGACTTTTTCAACAAAGCATATCATGCAGCAACACGTCAGGGCAG
TCCACGAAGGCGTAAAGGATGTGGCCTGCACATGGCCTGACTGTGACTGC
ATGTTTACAAGTAAGGGCAACATGCAGCAACACGTCACGGCAGTTCACGA
AGGCGTGAAGGATGTAGCCTGCACGTGGACAGACTGCGCTCAGATGTTTA
CAACCATTGGCAATATGCATCGACACGTCAGGGCAGTTCACGAAGGCGTG
AAGGATGTGGCCTGCACATGGCCTGACTGTGACTGCATGTTCGCAACTAA
GGGCAGCATGCAGCAACACGTCAGGGCAGTTCACGAAGGCGTGAAGGATG
TGGCCTGCACATGGCCTGACTGTGACTGCATGTTCGCAACTAAGGGCAGC
ATGCAGCAACACGTCAGGGCAGTTCAGGACGGCGTGAAGGATGTAGCCTG
CACGTGGACAGACTGCGCTCAGATGTTTACAACCATTGGCAATATGCATC
GACACGTCAGGGCAGTCCATGAAGGCGTGAAGGATGATGTGGCCTGCACA
TGGCCTGACTGTGACTGCATGTTCGCAACTAAGGGCAGCATGCAGCAACA
CGTCAGGGCAGTCCACGAAGGCGTAAAGGATGTGGCCTGCACATGGCCTG
ATTGTGACTGCATGTTTACAAGTAAGGGCAACATGCAGCAACACGTCAGG
GCAGTTCACGAAGGCGTAAAGGATGTGGCCTGCACATGGACGGACTGTGC
TCAGATGTTCAAAAGCAATGGTGAAATGCAATGA

protein sequence of jgi.p|Trimin1|170306

>Trimin1|170306|e_gw1.71.70.1 ID=Trimin1|170306|e_gw1.71.70.1|Name=jgi.p|Trimin1|170306|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp
MHIKTIQRERETCYTPQIWLPGLRQTVPVACTWPDYDQTFSTQQNMERHI
RAVHEGVKDVACTWTECKQTFSTKHIMQQHVRAVHEGVKDVACTWPDCDC
MFTSKGNMQQHVTAVHEGVKDVACTWTDCAQMFTTIGNMHRHVRAVHEGV
KDVACTWPDCDCMFATKGSMQQHVRAVHEGVKDVACTWPDCDCMFATKGS
MQQHVRAVQDGVKDVACTWTDCAQMFTTIGNMHRHVRAVHEGVKDDVACT
WPDCDCMFATKGSMQQHVRAVHEGVKDVACTWPDCDCMFTSKGNMQQHVR
AVHEGVKDVACTWTDCAQMFKSNGEMQ*

mRNA from alignment at Contig_71:419620..420791+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12410 ID=mRNA_12410|Name=jgi.p|Trimin1|170306|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1172bp|location=Sequence derived from alignment at Contig_71:419620..420791+ (Tribonema minus UTEX_B_3156 )
ATGCATATAAAGACTATACAGAGAGAGAGAGAGACATGTTACACACCTCA
AATTTGGCTGCCGGGTTTGCGTCAAACTGTGCCGGTGGCGTGCACTTGGC
CTGACTATGACCAGACATTTTCAACCCAGCAAAACATGGAGAGACACATC
AGGGCAGTTCACGAAGGCGTGAAGGATGTGGCCTGCACATGGACGGAGTG
TAAACAGACTTTTTCAACAAAGCATATCATGCAGCAACACGTCAGGGCAG
TCCACGAAGGCGTAAAGGATGTGGCCTGCACATGGCCTGACTGTGACTGC
ATGTTTACAAGTAAGGGCAACATGCAGCAACACGTCACGGCAGTTCACGA
AGGCGTGAAGGATGTAGCCTGCACGTGGACAGACTGCGCTCAGATGTTTA
CAACCATTGGCAATATGCATCGACACGTCAGGGCAGTTCACGAAGGCGTG
AAGGATGTGGCCTGCACATGGCCTGACTGTGACTGCATGTTCGCAACTAA
GGGCAGCATGCAGCAACACGTCAGGGCAGTTCACGAAGGCGTGAAGGATG
TGGCCTGCACATGGCCTGACTGTGACTGCATGTTCGCAACTAAGGGCAGC
ATGCAGCAACACGTCAGGGCAGTTCAGGACGGCGTGAAGGATGTAGCCTG
CACGTGGACAGACTGCGCTCAGATGTTTACAACCATTGGCAATATGCATC
GACACGTCAGGGCAGTCCATGAAGGCGTGAAGGATGTGGCCTGCACATGG
CCTGACTGTGATCGCATGTTCGCAGATAAGGGCAGCATGCAGAAACACGT
CAGGGCAGTTCACGAAGGCGTAAAGTAAAGGATGCGGCGTGCACATGGAC
GGACTGTGCTGAAATGTTCACAACCATTGACAATATGCAACGGCACGTCA
GGGCAGTCCACGAAGGCGTAAAGGATGTGGCCTGCACATGGCCTGACTGT
GACTGCATGTTCGCAACTAAGGGCAGCATGCAGCAACACGTCAGGGCAGT
CCACGAAGGCGTAAAGGATGTGGCCTGCACATGGCCTGATTGTGACTGCA
TGTTTACAAGTAAGGGCAACATGCAGCAACACGTCAGGGCAGTTCACGAA
GGCGTAAAGGATGTGGCCTGCACATGGACGGACTGTGCTCAGATGTTCAA
AAGCAATGGTGAAATGCAATGA

Coding sequence (CDS) from alignment at Contig_71:419620..420791+

>mRNA_12410 ID=mRNA_12410|Name=jgi.p|Trimin1|170306|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=984bp|location=Sequence derived from alignment at Contig_71:419620..420791+ (Tribonema minus UTEX_B_3156 )
ATGCATATAAAGACTATACAGAGAGAGAGAGAGACATGTTACACACCTCA
AATTTGGCTGCCGGGTTTGCGTCAAACTGTGCCGGTGGCGTGCACTTGGC
CTGACTATGACCAGACATTTTCAACCCAGCAAAACATGGAGAGACACATC
AGGGCAGTTCACGAAGGCGTGAAGGATGTGGCCTGCACATGGACGGAGTG
TAAACAGACTTTTTCAACAAAGCATATCATGCAGCAACACGTCAGGGCAG
TCCACGAAGGCGTAAAGGATGTGGCCTGCACATGGCCTGACTGTGACTGC
ATGTTTACAAGTAAGGGCAACATGCAGCAACACGTCACGGCAGTTCACGA
AGGCGTGAAGGATGTAGCCTGCACGTGGACAGACTGCGCTCAGATGTTTA
CAACCATTGGCAATATGCATCGACACGTCAGGGCAGTTCACGAAGGCGTG
AAGGATGTGGCCTGCACATGGCCTGACTGTGACTGCATGTTCGCAACTAA
GGGCAGCATGCAGCAACACGTCAGGGCAGTTCACGAAGGCGTGAAGGATG
TGGCCTGCACATGGCCTGACTGTGACTGCATGTTCGCAACTAAGGGCAGC
ATGCAGCAACACGTCAGGGCAGTTCAGGACGGCGTGAAGGATGTAGCCTG
CACGTGGACAGACTGCGCTCAGATGTTTACAACCATTGGCAATATGCATC
GACACGTCAGGGCAGTCCATGAAGGCGTGAAGGATGATGTGGCCTGCACA
TGGCCTGACTGTGACTGCATGTTCGCAACTAAGGGCAGCATGCAGCAACA
CGTCAGGGCAGTCCACGAAGGCGTAAAGGATGTGGCCTGCACATGGCCTG
ATTGTGACTGCATGTTTACAAGTAAGGGCAACATGCAGCAACACGTCAGG
GCAGTTCACGAAGGCGTAAAGGATGTGGCCTGCACATGGACGGACTGTGC
TCAGATGTTCAAAAGCAATGGTGAAATGCAATGA