mRNA_12406 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170301
Unique NamemRNA_12406
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Match: A0A836CAH1_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAH1_9STRA)

HSP 1 Score: 407 bits (1045), Expect = 2.010e-143
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1
Query:    1 MVEGGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNLALRAQNGLQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQRAEDTLEA 624
            MVEGGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNLALRAQNGLQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQRAEDTLEA
Sbjct:    1 MVEGGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNLALRAQNGLQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQRAEDTLEA 208          
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Match: A0A836C9W1_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9W1_9STRA)

HSP 1 Score: 292 bits (747), Expect = 3.080e-95
Identity = 172/308 (55.84%), Postives = 188/308 (61.04%), Query Frame = 1
Query:    1 MVEGGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDV----------------------------------------------------------------------------------------------------TAYNLALRAQNGLQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQRAEDTLEA 624
            MV+GGHRPHISLFHL L+A+AAK  A+EAWR+LALM+QSGTQPDV                                                                                                    TAYNLALRAQ  LQSAD LLKEMV+AGVAPDRGTY AMLRACRMSRD+ RALELF QMEA+N SFV+VH WNMLL AIIASG+PQSALQKA +M QR +APD+ T SLLLAAHAALGD+ +VD LVSQMSASGVEIPPAYY WVIEGYAQGGLMQRAEDTLEA
Sbjct:    1 MVKGGHRPHISLFHLFLKAVAAKCGAKEAWRLLALMRQSGTQPDVMAYNLALRSRTTLQSADLLLKEMVDAGVAPDRGTYMAMLRACRMSRDMPRALELFAQMEATNLSFVVFSWNSHSSSVRYQSRHVLHLLALMRQSGTKPDVTAYNLALRAQTRLQSADWLLKEMVDAGVAPDRGTYMAMLRACRMSRDMPRALELFAQMEATNLSFVNVHMWNMLLRAIIASGDPQSALQKATEMTQRGVAPDSITYSLLLAAHAALGDEAKVDSLVSQMSASGVEIPPAYYRWVIEGYAQGGLMQRAEDTLEA 308          
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Match: A0A835YL26_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL26_9STRA)

HSP 1 Score: 275 bits (703), Expect = 4.630e-89
Identity = 154/210 (73.33%), Postives = 166/210 (79.05%), Query Frame = 1
Query:    1 MVEGGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNLALRAQNGLQSADSLLKE--MVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQRAEDTLEA 624
            MV+ GHRPHISLFHLVLEA+AAKR+AREAWRVLALM+QSGT+PDVTAYN ALR+Q  LQSADSLLKE  MV+AGVAP + T                           +PSFV+VH WNMLLHAIIASGNPQSALQKAA+M QR LAPDA T SLLLAAHAALGDQTEVD LVSQMSASGVEI PAY+ WVIEGYAQGGLM RAEDTLEA
Sbjct:    1 MVKCGHRPHISLFHLVLEAVAAKREAREAWRVLALMRQSGTKPDVTAYNWALRSQITLQSADSLLKEFQMVDAGVAPGKVT---------------------------DPSFVNVHMWNMLLHAIIASGNPQSALQKAAEMTQRGLAPDAVTHSLLLAAHAALGDQTEVDSLVSQMSASGVEIAPAYHRWVIEGYAQGGLMLRAEDTLEA 183          
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Match: A0A835YKZ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKZ3_9STRA)

HSP 1 Score: 276 bits (706), Expect = 4.700e-89
Identity = 143/209 (68.42%), Postives = 166/209 (79.43%), Query Frame = 1
Query:    1 MVEGGHRPHISLFHLVLEALAAKRD-AREAWRVLALMKQSGTQPDVTAYNLALRAQNGLQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQRAEDTLEA 624
            M+  G  P  +LFH VL+AL   R  A +  RVLALM+Q   QPD  AYN ALR+Q     A +LLK+M+EAGVAPDR TY AMLR CRMSR++ RALE+F +MEA+N SFVDV TWNMLLHAI+ASGNPQSALQK A+M +R LAPDA TCSLLLAAHAALG++ EVD +VSQMSASG+E+ PAYY WV+EGYAQGGLMQRAED LEA
Sbjct:    7 MIRHGFYPQRALFHFVLQALTNNRSQAGQVRRVLALMRQPRIQPDAAAYNYALRSQANAGFAGALLKDMLEAGVAPDRDTYMAMLRVCRMSRNMPRALEIFAEMEAANASFVDVQTWNMLLHAIVASGNPQSALQKVAEMTRRGLAPDAITCSLLLAAHAALGNRAEVDSIVSQMSASGMEVAPAYYRWVVEGYAQGGLMQRAEDALEA 215          
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Match: A0A835YGC8_9STRA (PPR_long domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGC8_9STRA)

HSP 1 Score: 261 bits (667), Expect = 2.940e-86
Identity = 134/180 (74.44%), Postives = 155/180 (86.11%), Query Frame = 1
Query:    1 MVEGGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNLALRAQNGLQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVE 540
            MV+GGHRPHIS+FHLVL+ALA+K   +EAW VLA+M+QSGTQPD TAY+ ALR Q  LQ+AD+LLKEMV AGVAPD GTY AMLR CR+SRD+ RALELF +MEA++PSFV+VHTWN+LL AI+ASGNPQSAL KAA+M QR LAPDA T SLLLAAHAALGDQ +VD  VSQM ASG+E
Sbjct:    1 MVKGGHRPHISIFHLVLKALASKHGGKEAWHVLAIMRQSGTQPDATAYSWALRQQVSLQAADALLKEMVTAGVAPDSGTYIAMLRMCRISRDMPRALELFAEMEATDPSFVNVHTWNLLLLAIVASGNPQSALGKAAEMTQRGLAPDAATHSLLLAAHAALGDQAKVDSAVSQMRASGME 180          
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Match: A0A835Z0G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G4_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.830e-37
Identity = 88/211 (41.71%), Postives = 122/211 (57.82%), Query Frame = 1
Query:    1 MVEGGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNLALRAQNG---LQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQRAEDTLEA 624
            MV  GH+P +++FH VL A A       A  VL  M QSGT PD+TAYNLAL   +G   +  AD +L +M   G+AP+R T+  MLRACRM++D  RAL +F  +EA  P+++D   W  LL A+     PQ+ L+ AA+MA+R L   A    ++  AHA LGD    +  +S M A+G+++       V EGYA G  +  +E  LEA
Sbjct:  407 MVAIGHKPEMAVFHAVLRAKAKYLHKGGASVVLRRMAQSGTPPDLTAYNLALHTCSGGSAVLHADKILADMAAMGLAPNRHTFRGMLRACRMAQDWERALAVFGSVEAHYPAYMDTDLWICLLDALSVCRQPQAVLEAAARMAERGLPTTAAVHVVIAKAHAELGDGAAAETALSSMRAAGLKVTEVALFKVAEGYAHGRHVDASEQALEA 617          
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Match: A0A835Z7U6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U6_9STRA)

HSP 1 Score: 145 bits (367), Expect = 1.060e-36
Identity = 85/211 (40.28%), Postives = 125/211 (59.24%), Query Frame = 1
Query:    1 MVEGGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNLALR---AQNGLQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQRAEDTLEA 624
            M + GH P    F+ VL   A    + +   ++ +M +S    D+T Y+LALR   + + +Q AD +L  M  A VA D GT+   LR C++++D  RA+ +F  +EA++P+FVDV+ WN LL A+ AS  PQSAL  AA+MA+R +AP   T  +LL AHA LGD   V+ ++S M  +G E+       + +GYA GG  + AE+ LEA
Sbjct:    1 MADSGHNPDADTFYAVLRIRAPFMYSGDMATLIDVMSRSCLPLDITTYSLALRGCRSSDAVQQADRILASMAAARVALDGGTFAGALRTCKVAQDWRRAINVFRDIEANHPAFVDVNMWNRLLQALCASEVPQSALAAAAQMAERGVAPTRETRLVLLKAHATLGDTAAVERVLSSMRVAGEEVTFLSLAVLAKGYACGGHWEAAEEALEA 211          
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Match: A0A835YM11_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM11_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.490e-35
Identity = 72/150 (48.00%), Postives = 96/150 (64.00%), Query Frame = 1
Query:   10 GGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNLALRAQNG---LQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFT 450
            GGH+P + LF+L+L  L  +R+   A  V ALM+QS T PD  AYN ALRA  G   +Q AD +L+EM EAGVA + GT++A  +AC  SRD  RAL+ F +MEA+ P  V V TWN +L  ++  G P+ A+ K A+MA R L  +A T
Sbjct:   31 GGHQPSLQLFYLILGVLVERRNRPAAASVRALMRQSSTPPDTPAYNFALRACGGKHAMQHADQVLREMKEAGVAANIGTFSAAFQACWHSRDWQRALDRFAEMEANYPHLVTVQTWNQVLGVLVVGGKPELAITKVAEMANRKLKLNAGT 180          
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Match: A0A836C956_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C956_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.100e-34
Identity = 69/151 (45.70%), Postives = 98/151 (64.90%), Query Frame = 1
Query:  172 LQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQRAEDTLEA 624
            +QSAD L +EM E G++ D  T+TA  +AC  S+D  RAL +F +MEA +P  V V  WN LL  ++  G P+  + K A+MA+  L  +  T S LL AHAALGD+T+VD ++S+M A+GVE+ P     +++ YA  G +Q AE+TLEA
Sbjct:    1 MQSADKLQREMKEVGLSADAHTFTAAFKACYASKDWQRALNIFLEMEAQHPKLVTVSMWNELLAVLLNGGKPELLVAKVAEMAKCGLKLNTLTYSRLLGAHAALGDRTKVDSVISEMQAAGVEVTPRCRSNIVDAYATRGELQLAEETLEA 151          
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Match: A0A835Z225_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z225_9STRA)

HSP 1 Score: 124 bits (311), Expect = 1.980e-29
Identity = 74/177 (41.81%), Postives = 100/177 (56.50%), Query Frame = 1
Query:    1 MVEGGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNLALRAQNGLQS---ADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELFTQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFTCSLLLAAHAALGDQTEVDGLVSQM 522
            MV  GH+P +++ H +L A A       A  VL  M+QSGT PD+TAYNLAL    G  +   AD +L +M   G+AP+R T+  MLRAC+ ++D  RAL +F  +EA  P  VD   W  LL A+     PQ+ L  AA+MA+R L P A    ++  AHA LGD    +  +S M
Sbjct:  128 MVASGHKPEMTVCHAILRAKAKYLHRGGATVVLRRMEQSGTPPDLTAYNLALHTCCGSSAVLHADKILADMAAMGLAPNRHTFRGMLRACKQAQDCERALAVFRSVEAHYPVDVDADMWICLLDALSVCRQPQAVLTAAARMAERGLLPTAAIYVVIAKAHAELGDGAAAETALSSM 304          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170301 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
A0A836CAH1_9STRA2.010e-143100.00PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A836C9W1_9STRA3.080e-9555.84PPR_long domain-containing protein n=1 Tax=Tribone... [more]
A0A835YL26_9STRA4.630e-8973.33Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YKZ3_9STRA4.700e-8968.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YGC8_9STRA2.940e-8674.44PPR_long domain-containing protein (Fragment) n=1 ... [more]
A0A835Z0G4_9STRA1.830e-3741.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7U6_9STRA1.060e-3640.28Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YM11_9STRA5.490e-3548.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C956_9STRA1.100e-3445.70Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z225_9STRA1.980e-2941.81Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:390201..390824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170301|e_gw1.71.73.1
BRITEko00000,ko03016,ko03029
KEGG koko:K17710
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004519,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0097159,GO:1901360,GO:1901363
DescriptionPentatricopeptide repeat-containing protein At5g02830
COG categoryS
Max annot lvl33090|Viridiplantae
EggNOG OGsKOG4197@1|root,KOG4197@2759|Eukaryota,37JEI@33090|Viridiplantae
Evalue1.37e-07
Seed ortholog248742.XP_005651727.1
Hectar predicted targeting categoryother localisation
TranscriptId170623
TrackFilteredModels1
ProteinId170301
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170301gene_12406Tribonema minus UTEX_B_3156 geneContig_71 390201..390824 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12406_1exon_12406_1Tribonema minus UTEX_B_3156 exonContig_71 390201..390824 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12406CDS_12406Tribonema minus UTEX_B_3156 CDSContig_71 390201..390824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170301Trimin1|170301|e_gw1.71.73.1Tribonema minus UTEX_B_3156 polypeptideContig_71 390201..390824 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12406 ID=mRNA_12406|Name=jgi.p|Trimin1|170301|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=624bp|location=Sequence derived from alignment at Contig_71:390201..390824- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGAAGGCGGGCACCGTCCCCACATCTCGCTCTTTCACCTCGTTCT
AGAGGCTCTGGCTGCCAAACGCGATGCGAGGGAAGCGTGGCGTGTGCTGG
CACTCATGAAGCAATCTGGCACTCAGCCAGACGTGACAGCATACAATTTG
GCTTTGCGTGCACAAAACGGCTTACAGTCTGCTGATTCGCTGCTCAAGGA
AATGGTGGAGGCTGGCGTAGCCCCAGACAGGGGTACATACACGGCGATGC
TGCGCGCGTGCCGCATGTCGCGTGACATAACGCGTGCGCTAGAGCTCTTC
ACTCAGATGGAGGCAAGCAATCCCAGCTTCGTGGATGTGCACACGTGGAA
TATGCTCCTGCATGCGATCATCGCAAGCGGCAACCCACAATCAGCACTAC
AAAAGGCTGCCAAGATGGCACAGCGCAGCCTTGCACCTGATGCATTCACG
TGCTCCCTGCTGCTGGCGGCCCATGCAGCTCTCGGTGACCAAACCGAGGT
AGACGGCCTAGTCTCACAGATGAGTGCCTCAGGAGTGGAGATCCCGCCTG
CGTATTATCCCTGGGTCATCGAGGGTTACGCGCAAGGCGGGCTCATGCAG
CGCGCAGAGGACACATTGGAGGCA
back to top

protein sequence of jgi.p|Trimin1|170301

>Trimin1|170301|e_gw1.71.73.1 ID=Trimin1|170301|e_gw1.71.73.1|Name=jgi.p|Trimin1|170301|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=208bp
MVEGGHRPHISLFHLVLEALAAKRDAREAWRVLALMKQSGTQPDVTAYNL
ALRAQNGLQSADSLLKEMVEAGVAPDRGTYTAMLRACRMSRDITRALELF
TQMEASNPSFVDVHTWNMLLHAIIASGNPQSALQKAAKMAQRSLAPDAFT
CSLLLAAHAALGDQTEVDGLVSQMSASGVEIPPAYYPWVIEGYAQGGLMQ
RAEDTLEA
back to top

mRNA from alignment at Contig_71:390201..390824-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12406 ID=mRNA_12406|Name=jgi.p|Trimin1|170301|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=624bp|location=Sequence derived from alignment at Contig_71:390201..390824- (Tribonema minus UTEX_B_3156 )
ATGGTGGAAGGCGGGCACCGTCCCCACATCTCGCTCTTTCACCTCGTTCT AGAGGCTCTGGCTGCCAAACGCGATGCGAGGGAAGCGTGGCGTGTGCTGG CACTCATGAAGCAATCTGGCACTCAGCCAGACGTGACAGCATACAATTTG GCTTTGCGTGCACAAAACGGCTTACAGTCTGCTGATTCGCTGCTCAAGGA AATGGTGGAGGCTGGCGTAGCCCCAGACAGGGGTACATACACGGCGATGC TGCGCGCGTGCCGCATGTCGCGTGACATAACGCGTGCGCTAGAGCTCTTC ACTCAGATGGAGGCAAGCAATCCCAGCTTCGTGGATGTGCACACGTGGAA TATGCTCCTGCATGCGATCATCGCAAGCGGCAACCCACAATCAGCACTAC AAAAGGCTGCCAAGATGGCACAGCGCAGCCTTGCACCTGATGCATTCACG TGCTCCCTGCTGCTGGCGGCCCATGCAGCTCTCGGTGACCAAACCGAGGT AGACGGCCTAGTCTCACAGATGAGTGCCTCAGGAGTGGAGATCCCGCCTG CGTATTATCCCTGGGTCATCGAGGGTTACGCGCAAGGCGGGCTCATGCAG CGCGCAGAGGACACATTGGAGGCA
back to top

Coding sequence (CDS) from alignment at Contig_71:390201..390824-

>mRNA_12406 ID=mRNA_12406|Name=jgi.p|Trimin1|170301|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=624bp|location=Sequence derived from alignment at Contig_71:390201..390824- (Tribonema minus UTEX_B_3156 )
ATGGTGGAAGGCGGGCACCGTCCCCACATCTCGCTCTTTCACCTCGTTCT
AGAGGCTCTGGCTGCCAAACGCGATGCGAGGGAAGCGTGGCGTGTGCTGG
CACTCATGAAGCAATCTGGCACTCAGCCAGACGTGACAGCATACAATTTG
GCTTTGCGTGCACAAAACGGCTTACAGTCTGCTGATTCGCTGCTCAAGGA
AATGGTGGAGGCTGGCGTAGCCCCAGACAGGGGTACATACACGGCGATGC
TGCGCGCGTGCCGCATGTCGCGTGACATAACGCGTGCGCTAGAGCTCTTC
ACTCAGATGGAGGCAAGCAATCCCAGCTTCGTGGATGTGCACACGTGGAA
TATGCTCCTGCATGCGATCATCGCAAGCGGCAACCCACAATCAGCACTAC
AAAAGGCTGCCAAGATGGCACAGCGCAGCCTTGCACCTGATGCATTCACG
TGCTCCCTGCTGCTGGCGGCCCATGCAGCTCTCGGTGACCAAACCGAGGT
AGACGGCCTAGTCTCACAGATGAGTGCCTCAGGAGTGGAGATCCCGCCTG
CGTATTATCCCTGGGTCATCGAGGGTTACGCGCAAGGCGGGCTCATGCAG
CGCGCAGAGGACACATTGGAGGCA
back to top