mRNA_12396 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|87523
Unique Name	mRNA_12396
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|87523 vs. uniprot
Match: A0A835YKM0_9STRA (ATP synthase subunit d, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKM0_9STRA)

HSP 1 Score: 328 bits (840), Expect = 2.050e-111
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 3

Query:   42 MALRRSARRLKDMSATFDWDRILKGPVKPHPSVLELRTDAAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKFTVGELFDMDAAEVEFASRMERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSKGI 551
            MALRRSARRLKDMSATFDWDRILKGPVKPHPSVLELRTDAAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKFTVGELFDMDAAEVEFASRMERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSKGI
Sbjct:    1 MALRRSARRLKDMSATFDWDRILKGPVKPHPSVLELRTDAAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKFTVGELFDMDAAEVEFASRMERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSKGI 170

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BLAST of jgi.p|Trimin1|87523 vs. uniprot
Match: A0A484E6X4_BRELC (ATP synthase subunit d, mitochondrial n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E6X4_BRELC)

HSP 1 Score: 80.5 bits (197), Expect = 1.080e-14
Identity = 57/166 (34.34%), Postives = 87/166 (52.41%), Query Frame = 3

Query:   90 FDWDRILKGPVKPHPSVL--ELRTDAAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKFTVGELFDMDAAEVEFASRME------------RVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSK 545
            F+W+ I K    P        LR    ++ AE   Y + P PID+  YR  +K+  +VD ME +Y +   SF   T  EL D+ A   E    +             ++N++V +SK  + +L+ L+  M ++RTT +TT+D+M   YPE+ +EID+EIAN EW K
Sbjct:   18 FEWEAISKKLTDPRARAALDSLRDAHGQMAAEARMYVKEPEPIDFDYYRSVIKNKELVDAMEANYKSI--SFPVITPEEL-DISAKSDELPEELRLNEQEVVDKLFSQLNEKVADSKARIEELKELIGLMEETRTTLDTTMDEMTAMYPEVEEEIDDEIANLEWEK 180

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BLAST of jgi.p|Trimin1|87523 vs. uniprot
Match: A0A7S3JVE1_9STRA (ATP synthase subunit d, mitochondrial n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JVE1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.200e-14
Identity = 49/135 (36.30%), Postives = 83/135 (61.48%), Query Frame = 3

Query:  147 LRTDAAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKFTVGELFDMDAAEVEFASRMERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSKGI 551
            L+  A+++++  AKY   P PID++ Y+ ++    VVD +E  Y  SQ    KF  G +   +  E++    ++  +K ++ESK  +V+L A +A++  S+   +TTV+D+ KA+PE+ KE+DEEI NHEW K +
Sbjct:   42 LKVMASEISSLEAKYLGEPEPIDFSMYKSKL-GAGVVDKIEALY--SQVHIPKFPDGGMTPEEENELD--QTLKEADKLIDESKARIVELNAEIASLKASKVGPDTTVEDIYKAFPEIEKEVDEEIHNHEWGKDV 171

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BLAST of jgi.p|Trimin1|87523 vs. uniprot
Match: K3X7D5_GLOUD (ATP synthase subunit d, mitochondrial n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7D5_GLOUD)

HSP 1 Score: 80.1 bits (196), Expect = 1.260e-14
Identity = 51/155 (32.90%), Postives = 89/155 (57.42%), Query Frame = 3

Query:   90 FDWDRILKGPVKPHPSVL--ELRTDAAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKFTVGELFDMDAAEVEFASRM-ERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSK 545
             +WD I +    P        LR    ++ AE  +Y + P  ID+  YR  +K+  +V+ +E++Y      F   T  EL   +  E E   ++  ++N++V++SK  +V+L+ L+  M ++RTT +TTVD++   YPE+++EID+EIAN++W K
Sbjct:   19 IEWDAISQKLTDPRARAALDSLRNVHGEIQAEAREYLKEPEAIDFDYYRSIIKNKDLVNALEENY--KNIVFPTITPEELDTSEINEKETVDQLFAQLNEKVDDSKKRIVELQELIGLMEETRTTLDTTVDEIAAMYPEVSEEIDDEIANYDWEK 171

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BLAST of jgi.p|Trimin1|87523 vs. uniprot
Match: A0A7S1FLW8_9STRA (ATP synthase subunit d, mitochondrial n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FLW8_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.270e-12
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 3

Query:  150 RTDAAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKF--TVGELFDMDAAEVEFASRMERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSK 545
            R  A ++ +   K+  PP PID+A+YR ++ D  VVD  E D  A   +F KF   + E F+  A E+  ++        VEESK+ + +LE  L  M   R+    T+ D+  AYPE+ KE+DEEI  H+W K
Sbjct:    3 RPVAGEIESPPVKFPPPPPPIDFAAYRAKLSDASVVDAFEADSKAL--TFPKFEGALKEEFETKAGEIVASAA-----SAVEESKLAIAELEEQLKAMEHIRSGN-PTISDVYAAYPEIQKEVDEEIETHQWCK 128

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BLAST of jgi.p|Trimin1|87523 vs. uniprot
Match: A0A2D4CIA1_PYTIN (ATP synthase subunit d, mitochondrial n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIA1_PYTIN)

HSP 1 Score: 74.3 bits (181), Expect = 2.720e-11
Identity = 52/177 (29.38%), Postives = 93/177 (52.54%), Query Frame = 3

Query:   42 MALRRSARRLKDMSATFDWDRILKGPVKPHPSVL--ELRTDAAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDY------AASQKSFRKFTVGELFDMDAAEVEFASRM-ERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSK 545
            + LR+   R       FDW+ + K    P        LR    ++ AE  ++   P  ID+  YR  +K+  +V+ ME++Y        + +   K +     ++   E E   ++  +++ +VE+SK  +V+L+ L++ + ++RTT  TT+D++   YPE+A+EID+EIAN EW K
Sbjct:  329 LKLRQQVIRRVAAQRAFDWEGVSKKLSDPRARAALDSLRNLHGEIQAEARQFVNEPEAIDFDYYRSVIKNKELVNAMEENYKNIVFPTITPEDLDKISDATPEELRVNEKETVDQLFAQLHDKVEDSKKRIVELQELISLLEETRTTLNTTMDEVTAMYPEVAEEIDDEIANFEWDK 505

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BLAST of jgi.p|Trimin1|87523 vs. uniprot
Match: A0A8K1CTV1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CTV1_PYTOL)

HSP 1 Score: 69.3 bits (168), Expect = 1.270e-10
Identity = 53/180 (29.44%), Postives = 92/180 (51.11%), Query Frame = 3

Query:   42 MALRRSARRLKDMSATFDWDRILKGPVKPHPSVL--ELRTDAAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKFTVGELFDMDAAEVEFASRME----------RVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSK 545
            + LR+   R        +WD +      P        LR    ++  E  ++   P  ID+  YR  +K+  +V+ ME++Y      F   T  +L D  +A+   A R+           ++N++VE+SK  +V+L+ ++A + ++RTT +TT+D++   YPE+ +EID+EIAN EW K
Sbjct:    2 LKLRQQVVRRVAAQRALNWDALSTKLTDPRARAALDSLRNLHGEIQNEARQFVNEPEAIDFEYYRSVIKNKDLVNAMEENY--KNIVFPTITPEDL-DKVSADAPEALRLNEQETIDQLFAQLNEKVEDSKKRIVELQEVVALLEQTRTTLDTTMDEVAAMYPEVGEEIDDEIANFEWEK 178

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BLAST of jgi.p|Trimin1|87523 vs. uniprot
Match: A0A7S3ZPJ3_9STRA (ATP synthase subunit d, mitochondrial n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZPJ3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.380e-10
Identity = 40/120 (33.33%), Postives = 70/120 (58.33%), Query Frame = 3

Query:  186 KYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKFTVGELFDMDAAEVEFASRMERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSK 545
            KYS  PA ID+A+Y+ ++ D  ++ L EK++   Q  +  F      ++D A+ E+ +      +++ ESK  + +L   +  M+  +    TTVDD+ +AYP++ KE+D+EI  HEW+K
Sbjct:   56 KYSSAPAAIDFAAYKGKV-DASLLALAEKEFKGVQ--YPPFA-----ELDEAKAEYDAMFAEAQQKIAESKTRIDELTKQMNVMVAKKVGHATTVDDVYEAYPDIEKEVDDEIDKHEWAK 167

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BLAST of jgi.p|Trimin1|87523 vs. uniprot
Match: A0A6S8YNK8_9STRA (ATP synthase subunit d, mitochondrial n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8YNK8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 7.290e-10
Identity = 47/131 (35.88%), Postives = 76/131 (58.02%), Query Frame = 3

Query:  159 AAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKFTVGELFDMDAAE-VEFAS-RMERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSK 545
            AA+  AE  KYSEPPAPID+A+ +  ++D  +V+ +E  Y  S+              D A+ +E A  R+    + +EE++ EL  L A       +RTTRET+ +D+ + +P++A+E+++EI N EW K
Sbjct:   47 AAEAMAE--KYSEPPAPIDFAAAKSSVRDKALVEALEALYTTSKPPVETHEWSAEDQADKAQQIEDAQGRLAFTQEMIEETEAELAFLRA-------NRTTRETSGNDLKQNFPDIAEEVEKEIENREWFK 168

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BLAST of jgi.p|Trimin1|87523 vs. uniprot
Match: A0A485LBF3_9STRA (ATP synthase subunit d, mitochondrial n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LBF3_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.500e-7
Identity = 42/162 (25.93%), Postives = 81/162 (50.00%), Query Frame = 3

Query:   78 MSATFDWD--RILKGPVKPHPSVLELRTDAAKVTAELAKYSEPPAPIDWASYRKRMKDPYVVDLMEKDYAA----SQKSFRKFTVGELFDMDAAEVEFASRMERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAYPEMAKEIDEEIANHEWSK 545
            +S + +W+  R     V+   S+  L+     + AE   Y   P  I++  YR  +K+  +VD +E++Y        K    +T G   + D           R++ ++E+S   + +L+  +  +  +RTT++T+VD++   +PE+A EI++EIA  +W K
Sbjct:   22 VSLSTNWEPLRAKLSDVRARQSLDSLKQTHNNIVAEGLHYQREPEAINFTHYRNLIKNKDLVDALEENYRTIVFPDIKPEDCYTPGRSVESD-----LKPTFNRLHAEIEDSTERIEELKEFITLLEATRTTKDTSVDEVAAMHPEIADEIEDEIARLDWEK 178

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|87523 vs. uniprot

BLAST of jgi.p|Trimin1|87523 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
A0A835YKM0_9STRA	2.050e-111	100.00	ATP synthase subunit d, mitochondrial n=1 Tax=Trib...	[more]
A0A484E6X4_BRELC	1.080e-14	34.34	ATP synthase subunit d, mitochondrial n=1 Tax=Brem...	[more]
A0A7S3JVE1_9STRA	1.200e-14	36.30	ATP synthase subunit d, mitochondrial n=1 Tax=Aure...	[more]
K3X7D5_GLOUD	1.260e-14	32.90	ATP synthase subunit d, mitochondrial n=1 Tax=Glob...	[more]
A0A7S1FLW8_9STRA	2.270e-12	37.31	ATP synthase subunit d, mitochondrial n=1 Tax=Core...	[more]
A0A2D4CIA1_PYTIN	2.720e-11	29.38	ATP synthase subunit d, mitochondrial n=2 Tax=Pyth...	[more]
A0A8K1CTV1_PYTOL	1.270e-10	29.44	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]
A0A7S3ZPJ3_9STRA	1.380e-10	33.33	ATP synthase subunit d, mitochondrial n=2 Tax=Pela...	[more]
A0A6S8YNK8_9STRA	7.290e-10	35.88	ATP synthase subunit d, mitochondrial n=2 Tax=Dity...	[more]
A0A485LBF3_9STRA	2.500e-7	25.93	ATP synthase subunit d, mitochondrial n=1 Tax=Apha...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_71	contig	Contig_71:333613..338095 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|87523\|CE87522_721
Description	ATP synthase D chain, mitochondrial. Source PGD
COG category	C
Max annot lvl	121069\|Pythiales
EggNOG OGs	KOG3366@1\|root,KOG3366@2759\|Eukaryota,1MBY0@121069\|Pythiales
Evalue	3.23e-16
Seed ortholog	65071.PYU1_T013134
Hectar predicted targeting category	other localisation
Ec32 ortholog description	n/a
Ec32 ortholog	Ec-13_002270.1
TranscriptId	87845
Track	FilteredModels1
ProteinId	87523

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|87523	gene_12396	Tribonema minus UTEX_B_3156	gene	Contig_71 333613..338095 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|87523	Trimin1\|87523\|CE87522_721	Tribonema minus UTEX_B_3156	polypeptide	Contig_71 333926..338054 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12396_4	exon_12396_4	Tribonema minus UTEX_B_3156	exon	Contig_71 333613..334096 -
exon_12396_3	exon_12396_3	Tribonema minus UTEX_B_3156	exon	Contig_71 335295..335445 -
exon_12396_2	exon_12396_2	Tribonema minus UTEX_B_3156	exon	Contig_71 335938..336072 -
exon_12396_1	exon_12396_1	Tribonema minus UTEX_B_3156	exon	Contig_71 337999..338095 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_12396	UTR3_12396	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_71 333613..333925 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12396	CDS_12396	Tribonema minus UTEX_B_3156	CDS	Contig_71 337999..338054 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_12396	UTR5_12396	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_71 338055..338095 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_71:333613..338095-
coding sequence from alignment at Contig_71:333613..338095-

spliced messenger RNA

>mRNA_12396 ID=mRNA_12396|Name=jgi.p|Trimin1|87523|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_71:333613..338095- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGGAGCTCCCGCGGCGAAGGGAGGAGAGCTAAGGCAGCACCATGGCGCTG
CGAAGGAGTGCACGTCGCTTGAAGGACATGTCGGCGACCTTCGACTGGGA
CCGCATCCTCAAGGGTCCCGTCAAGCCCCACCCCAGCGTGTTGGAGCTGC
GCACAGATGCGGCTAAGGTCACCGCAGAGCTGGCCAAGTACTCTGAGCCT
CCCGCACCCATCGACTGGGCTTCCTACCGCAAGCGGATGAAGGACCCCTA
TGTGGTGGACCTGATGGAGAAGGACTACGCAGCCAGCCAGAAGTCATTCC
GCAAGTTCACGGTCGGGGAGCTGTTTGACATGGACGCAGCGGAGGTGGAG
TTTGCCTCGCGCATGGAGCGTGTCAACAAGCAGGTTGAGGAGTCCAAGGT
GGAGCTGGTGAAGCTGGAGGCACTGCTGGCGACCATGATGAAGTCGCGCA
CCACGCGTGAGACCACGGTGGATGACATGATCAAGGCGTACCCAGAGATG
GCCAAGGAAATCGATGAGGAGATTGCCAACCACGAGTGGTCCAAGGGCAT
CTGAAATGCCCGAATCTTGCCAAGTCCCGGGCCGCAGTAAGCAACTCACC
GGCATCTGAGGCTTTGATTGTCGTCCTGTCGAGGGGCTGTGAGTTGCTTC
TAGCGGACATTGCTGGGGCAAAGGACTGGAATGTGGTGGTCAGTGTGACC
ATGGCAGCGTGAACTAGCAAGGGCAGGGTAGCAACGTCAGAAATATACAT
ATTACGATGAGGTGCGTGTGGTTAGCAGTCAGCTGCATGCCCGTCTTGTA
TGGTGGCCTTTGTTTTTGTATTGGTCACCTGCCAAGTGCGGCACCATTGA
GCACATCATCTCTGCTG

protein sequence of jgi.p|Trimin1|87523

>Trimin1|87523|CE87522_721 ID=Trimin1|87523|CE87522_721|Name=jgi.p|Trimin1|87523|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=171bp
MALRRSARRLKDMSATFDWDRILKGPVKPHPSVLELRTDAAKVTAELAKY
SEPPAPIDWASYRKRMKDPYVVDLMEKDYAASQKSFRKFTVGELFDMDAA
EVEFASRMERVNKQVEESKVELVKLEALLATMMKSRTTRETTVDDMIKAY
PEMAKEIDEEIANHEWSKGI*

mRNA from alignment at Contig_71:333613..338095-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12396 ID=mRNA_12396|Name=jgi.p|Trimin1|87523|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4483bp|location=Sequence derived from alignment at Contig_71:333613..338095- (Tribonema minus UTEX_B_3156 )
AGGAGCTCCCGCGGCGAAGGGAGGAGAGCTAAGGCAGCACCATGGCGCTG
CGAAGGAGTGCACGTCGCTTGAAGGACATGTCGGCGACCTTCGACTGGTG
AGAGCTGCCAGATACTGTTCACGTTGTCAAAATCACCCAAACACTTCAGG
CCGCCAGCGATGGGAGCGGCTACGAAGGCGTAGTTGCAGCCCCCATTGAC
AAATTGACCAATCTAGCGCTGCTTCAAGACAGGCGGCAAGCTGCTTTTTC
TCTACTTTCACTCTCTGCTGTATGACCTCGACGTATTACAGGGGACAGGC
ATTGTGCGCCGCCGTTGCAGGCTGTGGACTGAGCACACCAGTTGGCTTTC
TCTATCAAGTACACAATTCAAGTAGGCGGGGCACACAGGCTTGCTGCAAT
GCAACTAGGAGGACGGTCTCTCTATACCGACAGAGACCGTTGCATGGTAT
CGTGCCTTTTTTACGCACGTTGCTACAAGCTTTGGCTCCATTTTGTTCAG
TATTCCTGCTCAAGCGGCCCTTATTCTGTTGTCCTCGCAGGTATCGCACT
TGCTCGATCATAATGCAAACTGCAGTTCGCAAAAACGATCATCACGCACA
GCTGCTGAAAGCTGCTGCCATCGCGTCATTAACATCGAGTTCGGGATCCT
GAATGCTACAAAAACGTTGCCTCAGCTATGTAGCGTGAATGCCTTGTAAC
ATCTGTCTCGCAGTAGCCATATTCTGACAGGCTTACAGCCGGGCAGAAGG
CTAGCTTCAGGCTACCCTGGTGCCGTTGCAGGCAACCTTCTTGTCTTCAG
GGGCAGTCAGGGGCAGAATCTCCCTGCCTCTTCCTTTTTTGCCTCGATGT
CGCATCTCAACACAGTAAGTCGACAACGAAAAAAGAGAAACAGTTCAGAG
CCGTTGCTCAAACAGGGCGCGGACAACCAAGTGGTTGTGGCGCGCACTTC
CAGCATGACGCTACGTGGGAGCAGTCTGATGCGTGACTCTGATGCGTGTG
CGTGTTGGCCTGCTCAGGTCCACTGCCCTGGAGTGCGCGCTGCCTGAACT
TGAACTTCAAATTCACCGGTTCATCGGCCACCTTTGACGCTTGTGCTTGT
TACATGGTGTTTACTCACCTTGGAAGTTCATTTTCATCAAAGACGGTAGA
GGACTCCATGAGATTATGGTAGTGCACATTCCCATCACCGGCGTGTGCTT
CAGGCATGTACCATTCATAAGCATGCATATTGCATCATGCAGCCGCTTCA
AACTTTTGTCCCATGCCACCAGGTATGCAGGTGTGAGGCTCACTTTTAAG
TACTCTTACCCTGACCCTAACCCTCTGATGACGTCATAATCGCATTCTCA
CTGGAAGGTTTCTATCACTTGTGCGCCATGACACCACGCGAAGCCTAGTC
CAGATGGTGCGCGCACTCACAGTCTGACCAGCCTTTGGGCTTTCTCACTT
GGTCGCTTGCTGACACGAGGCCACATCTTTTGACCTCCAGCGGCAACATT
GACCTAGACTAAACAGACTGTTGAACGCTCAAAAGCCTGAAGTGAAATTT
ACAGCACGTCACTCTGGACGTGACTTGCCTGCCATATCTTGTGGGGTGCG
AGGAAGCTCGACAGGGAATTCAGCAAACACAGCAACACGTGGATGGTTGG
AAGCAACTGCTGCAGCAGCACACTGTGGACATCTTCTGTAGGCAGATTGA
GCATAGTGAATACTTGAAGTAGATCAGAGGCGGCCCGTCTGCTCTGCATA
TGCACTTCCGTGCTGTGCTGACTGAAACCCCTGCCATCATGTGCCCCAAT
CCTTCACCTGCAGACAGGTAATGATCGCATTGTGCTGCTGCAGATGCACC
AAGACAACGCCTTAATTCTCATCAAGGTTCCTCACGCCCACCAGACCTGG
CCTCATACTTTCCGTTGTATCATGGGTATACATGCCGATCTGCTCATGAT
GACTCACATCATTTCTGCATGGTACACTGGCCTTATTAGCTGACGTTTGT
TCTCCACGATGCCACTGCACCAGGGACCGCATCCTCAAGGGTCCCGTCAA
GCCCCACCCCAGCGTGTTGGAGCTGCGCACAGATGCGGCTAAGGTCACCG
CAGAGCTGGCCAAGTACTCTGAGCCTCCCGCACCCATCGACTGGGCTTCC
TACCGCAAGTGAGTTGCTAGAGCTATGTGCTGCAACAAGTACGCTGTGAA
TTGCTGCATTCGCGAGTGCATTGGAGCTACTTCAACTATACTTCAACTAT
ACTTGCTGCATGCATGCATACCCCCGGCATCCATTGACTGGGCTTTCCTA
TCGCACAACAAGTACACAGTGCATGTGCATATGTATAAGATGTGGCAGTA
TTGAACAAACATGCTCTTGTTTGTGATTGGTGTACCTGTACTGTGGGTCA
GCTGGACAGCTTCATGCTGGAATGGACTGGCAGAAACTTAAAACATTTTT
GCACGCCAATCGTAACTGTTCTTGAGACGACGGAAGACTCCTGCATTGTA
CACCGTGTGTGTAAGCAGACTCCACCACCTCTGCCTGCTTCATCAGCCCA
ATCATCTTGAAGAGCACATACTGTAACAAGGTGCGCCCCCGCACCCTTTG
ATGCCGCTGCTGACCGCTTTACCCTCTGAAACATTGCAATGCTTTCTTAG
GCGGATGAAGGACCCCTATGTGGTGGACCTGATGGAGAAGGACTACGCAG
CCAGCCAGAAGTCATTCCGCAAGTTCACGGTCGGGGAGCTGTTTGACATG
GACGCAGCGGAGGTGGAGTTTGCCTCGCGCATGGAGCGTGTCAACAAGCA
GGTATGTAGGTTTCTGTTGTTAGCAGGGTATGTAGGTATTATGTTGGTGC
AAGCAGCGTATGTTGGTAATGCCAGTTGGGGAGCTGTTTGACATGGATGC
AGTTGAGATAGAGTTTGCCTCGCGCATGGAGCGCGTCAACAAGCAGGTAT
GTAGGTAGCCTGGTGTGCGTGCAAGCAGGGTATGCTGTTTGCCTGTGTGT
CAGCAAGACGGCGTGTAGGTATGCATGCATGTCAACAAGACGGCATGTAG
GTATCATGCCCAAAATAGGTGGAAGCAGCGTTCATCCTGAGACAATGTGT
AGTATTTCCTTCAAGAATGAGCTAGCATTCCCGCTTTGCGCAAATATTGT
GCGCTGTGATACTTGATTTTTCCAGTGTTTTGGTACAGGATGGTACGAAG
TCTTGCAGCACGTGCTGACAGAGAATATGCTCTGACATGCCTGCTGCTCG
GCCGCAATTGGGCATGTTCCACAATGGCGGTGTGAGAGCTGTTGTGGCAC
CCACCTGCATCTGCAGCGTTGGCTTGTCGCAGTCAACAGATGTACCTGCT
GCTTGTACATGACCCGAAAATCAGTTGTGAGAGTGTGCATCAGATGCTTG
TTGTAAGGTGGATGCTTGTTGCAACAGGCCAGCAATTAATGTGTACAAGC
TAACACGAAAAGTACAATCTGCAGAATCCAGGGGGGGGGGCACTTGGAGG
AGGACGTAGGGGAGGACCCCGAGATGCCATTTGGCGGCGGCGGCGTTTGA
GTGGTTGTCGTTGCGACACTTTCAGACTGTCATACGACATGTAGATTCTT
TACAGCTAGATGCCAATCATCTGGGCTTTTTTGCGCCCTGAGCGAGAATT
AATGAAAAGTACAATCTGAGTGGTTGTCATTGAGACACTTTCTGACTTTC
ACACGACATGTAGATTCCGTACAGCAAGCTTCAAGTTAGATATCATTCAT
CTGGGCTTTTTCGCGCCCTGAGCGACAATTTATCAAAAAAGTATAAGCTA
ACACCACTTGAGGTTGACGCACGAGTTTCTACATGTGCCATTGACACGGC
ACAGGCAGATGTCCCATGCGCACTGAGAACACACTGTTGTCAAAATTGAG
GCAAGGTTTAGGCTCGCGCCACAACCGTCTGCATGACACCAGCAAGCAAC
CCTCAAGTTGAACTAACGCCTCCTGTTCTACCCCTGTGGCACATCACAGG
TTGAGGAGTCCAAGGTGGAGCTGGTGAAGCTGGAGGCACTGCTGGCGACC
ATGATGAAGTCGCGCACCACGCGTGAGACCACGGTGGATGACATGATCAA
GGCGTACCCAGAGATGGCCAAGGAAATCGATGAGGAGATTGCCAACCACG
AGTGGTCCAAGGGCATCTGAAATGCCCGAATCTTGCCAAGTCCCGGGCCG
CAGTAAGCAACTCACCGGCATCTGAGGCTTTGATTGTCGTCCTGTCGAGG
GGCTGTGAGTTGCTTCTAGCGGACATTGCTGGGGCAAAGGACTGGAATGT
GGTGGTCAGTGTGACCATGGCAGCGTGAACTAGCAAGGGCAGGGTAGCAA
CGTCAGAAATATACATATTACGATGAGGTGCGTGTGGTTAGCAGTCAGCT
GCATGCCCGTCTTGTATGGTGGCCTTTGTTTTTGTATTGGTCACCTGCCA
AGTGCGGCACCATTGAGCACATCATCTCTGCTG

Coding sequence (CDS) from alignment at Contig_71:333613..338095-

>mRNA_12396 ID=mRNA_12396|Name=jgi.p|Trimin1|87523|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=513bp|location=Sequence derived from alignment at Contig_71:333613..338095- (Tribonema minus UTEX_B_3156 )
ATGGCGCTGCGAAGGAGTGCACGTCGCTTGAAGGACATGTCGGCGACCTT
CGACTGGGACCGCATCCTCAAGGGTCCCGTCAAGCCCCACCCCAGCGTGT
TGGAGCTGCGCACAGATGCGGCTAAGGTCACCGCAGAGCTGGCCAAGTAC
TCTGAGCCTCCCGCACCCATCGACTGGGCTTCCTACCGCAAGCGGATGAA
GGACCCCTATGTGGTGGACCTGATGGAGAAGGACTACGCAGCCAGCCAGA
AGTCATTCCGCAAGTTCACGGTCGGGGAGCTGTTTGACATGGACGCAGCG
GAGGTGGAGTTTGCCTCGCGCATGGAGCGTGTCAACAAGCAGGTTGAGGA
GTCCAAGGTGGAGCTGGTGAAGCTGGAGGCACTGCTGGCGACCATGATGA
AGTCGCGCACCACGCGTGAGACCACGGTGGATGACATGATCAAGGCGTAC
CCAGAGATGGCCAAGGAAATCGATGAGGAGATTGCCAACCACGAGTGGTC
CAAGGGCATCTGA