Trimin1|350745|estExt_Genemark1.C_Ctg_700071 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350745
Unique Name	Trimin1\|350745\|estExt_Genemark1.C_Ctg_700071
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	751

Homology

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BLAST of jgi.p|Trimin1|350745 vs. uniprot
Match: A0A835YLA0_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA0_9STRA)

HSP 1 Score: 765 bits (1975), Expect = 2.210e-267
Identity = 750/750 (100.00%), Postives = 750/750 (100.00%), Query Frame = 0

Query:    1 MGKETGYNGVRRDRHRFRAEIGLRDGSSKMTRHSLGCYDTPEAAALRFNEALRQLRPDDLHLLNEVPGYADDAPAAAANXXXXXXXXXXXXXSAHASPRPSQVFSHTAAHPYKGVCRHSRGWQASFTKDKVKLHLGTHDTPIEAALAYNDGIRHLKPDLLHLMNDIPAEEARKYAAGQPYRDKLVAAAAAKLKARLQLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVELAVTAENGAQKRPATTAPHAAKHPKKAWRAQRVDAVVPAEARNGGXXXXXXXXXXXXXXXXXXXXXSSARKRPRPADEALDGAXXXXXXXXXXXXXXQVDVPRHVLVVXXXXXXXXXXXSHRDVAAPAXXXXXXXXSGAHSSXXXXXXXXXXXXXPPQAPALQPPPWATTAGPAXXXXXXXXXXXXXXXXXTDDASDSAQPSGPDVKAATDDAAVGAPPPAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATASAPATGGDTGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPAGRTDSGSLMPDDLAHSERAAAAESPPGFGGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMVVSAASSSGGFREYGGVLAAPVAARQHFTSATAAALRQLERRAEKGRAQTALVECLKALDISDDVKLEMIGAIMRA 750
            MGKETGYNGVRRDRHRFRAEIGLRDGSSKMTRHSLGCYDTPEAAALRFNEALRQLRPDDLHLLNEVPGYADDAPAAAANXXXXXXXXXXXXXSAHASPRPSQVFSHTAAHPYKGVCRHSRGWQASFTKDKVKLHLGTHDTPIEAALAYNDGIRHLKPDLLHLMNDIPAEEARKYAAGQPYRDKLVAAAAAKLKARLQLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVELAVTAENGAQKRPATTAPHAAKHPKKAWRAQRVDAVVPAEARNGGXXXXXXXXXXXXXXXXXXXXXSSARKRPRPADEALDGAXXXXXXXXXXXXXXQVDVPRHVLVVXXXXXXXXXXXSHRDVAAPAXXXXXXXXSGAHSSXXXXXXXXXXXXXPPQAPALQPPPWATTAGPAXXXXXXXXXXXXXXXXXTDDASDSAQPSGPDVKAATDDAAVGAPPPAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATASAPATGGDTGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPAGRTDSGSLMPDDLAHSERAAAAESPPGFGGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMVVSAASSSGGFREYGGVLAAPVAARQHFTSATAAALRQLERRAEKGRAQTALVECLKALDISDDVKLEMIGAIMRA
Sbjct:    1 MGKETGYNGVRRDRHRFRAEIGLRDGSSKMTRHSLGCYDTPEAAALRFNEALRQLRPDDLHLLNEVPGYADDAPAAAANXXXXXXXXXXXXXSAHASPRPSQVFSHTAAHPYKGVCRHSRGWQASFTKDKVKLHLGTHDTPIEAALAYNDGIRHLKPDLLHLMNDIPAEEARKYAAGQPYRDKLVAAAAAKLKARLQLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVELAVTAENGAQKRPATTAPHAAKHPKKAWRAQRVDAVVPAEARNGGXXXXXXXXXXXXXXXXXXXXXSSARKRPRPADEALDGAXXXXXXXXXXXXXXQVDVPRHVLVVXXXXXXXXXXXSHRDVAAPAXXXXXXXXSGAHSSXXXXXXXXXXXXXPPQAPALQPPPWATTAGPAXXXXXXXXXXXXXXXXXTDDASDSAQPSGPDVKAATDDAAVGAPPPAQLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPATASAPATGGDTGSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAPAGRTDSGSLMPDDLAHSERAAAAESPPGFGGADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAMVVSAASSSGGFREYGGVLAAPVAARQHFTSATAAALRQLERRAEKGRAQTALVECLKALDISDDVKLEMIGAIMRA 750

[Close]

BLAST of jgi.p|Trimin1|350745 vs. uniprot
Match: A0A835YKT6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKT6_9STRA)

HSP 1 Score: 136 bits (343), Expect = 2.540e-29
Identity = 94/241 (39.00%), Postives = 120/241 (49.79%), Query Frame = 0

Query:    6 GYNGVRRDRHRFRAEIGLRDGSSKMTRHSLGCYDTPEAAALRFNEALRQLRPDDL------------------------HLLNEVP---GYADDA-----PAAAA---------------NXXXXXXXXXXXXXSAHASPRPSQVFSHTAAHPYKGVCRHSRGWQASFTKDKVKLHLGTHDTPIEAALAYNDGIRHLKPDLLHLMNDIPAEEARKYAAGQPYRDKLVAAAAAKLKARLQLP 199
            GY+GV+   +RFR+ I LRD +  + + +LG +DT E AALR N A+R  RP+DL                        HLLN+VP     AD A     P+AAA               N             S    P        +  H Y G+ R+   + A F +D VKL  GT DTPIEAALAYN+GIRHL+PD  HL+NDIP EEA  YA  QP RD+ VA+AA +L+   + P
Sbjct:  687 GYHGVQPSGNRFRSYIHLRDETGALKQRALGVFDTVEEAALRVNAAVRMFRPNDLQLQVVEVCTSLLLIAVCRPRVPPQHLLNQVPMAMSAADVAAHNGSPSAAATDGADSDVSISSLAENETAYMDDGVSGPGSEAYDPSLQAHVRASPLHNYTGITRNGTKYMAQFNRDGVKLRFGTWDTPIEAALAYNEGIRHLRPDHQHLLNDIPPEEAALYAVSQPRRDQYVASAALRLEEARKRP 927

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350745 vs. uniprot

BLAST of jgi.p|Trimin1|350745 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YLA0_9STRA	2.210e-267	100.00	AP2/ERF domain-containing protein n=1 Tax=Tribonem...	[more]
A0A835YKT6_9STRA	2.540e-29	39.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 111..171 e-value: 0.012 score: 7.7 coord: 6..72 e-value: 0.045 score: 2.3
IPR001471	AP2/ERF domain	PROSITE	PS51032	AP2_ERF	coord: 6..66 score: 9.229237
IPR036955	AP2/ERF domain superfamily	GENE3D	3.30.730.10	AP2/ERF domain	coord: 111..158 e-value: 1.1E-5 score: 27.5 coord: 6..64 e-value: 2.7E-6 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 363..485
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 505..641
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 465..480
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 250..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 397..416
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 77..106
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 112..154

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_70	contig	Contig_70:634830..643259 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350745	mRNA_10913	Tribonema minus UTEX_B_3156	mRNA	Contig_70 634357..643259 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350745|estExt_Genemark1.C_Ctg_700071 ID=Trimin1|350745|estExt_Genemark1.C_Ctg_700071|Name=jgi.p|Trimin1|350745|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=751bp
MGKETGYNGVRRDRHRFRAEIGLRDGSSKMTRHSLGCYDTPEAAALRFNE
ALRQLRPDDLHLLNEVPGYADDAPAAAANGAATATPGSASAQSAHASPRP
SQVFSHTAAHPYKGVCRHSRGWQASFTKDKVKLHLGTHDTPIEAALAYND
GIRHLKPDLLHLMNDIPAEEARKYAAGQPYRDKLVAAAAAKLKARLQLPP
PTPALSSPCAAAVAAAAAPPLTAAAQPEQLVSVLPLPPPPPPVELAVTAE
NGAQKRPATTAPHAAKHPKKAWRAQRVDAVVPAEARNGGGSGGAVANGGS
LDGAAAAINGSSARKRPRPADEALDGAAMQAAAAAAAGAAAQVDVPRHVL
VVASSGGGAAAADSHRDVAAPASAPPPASASGAHSSAGSGASAPAPAGAP
PQAPALQPPPWATTAGPAAQPPSSAMAPAAAAAARTDDASDSAQPSGPDV
KAATDDAAVGAPPPAQLAAQPPPQPAAPPATAPAAAAAGAPPAAAAAAAA
APATASAPATGGDTGSTPAAPPSSAAPPQPGSAAPSAAAAAAAAAPLAHR
ASDAGSDGPIDGALLTMGPAPGPHGSGSAGSSTGSEAAAAAHDAPAGRTD
SGSLMPDDLAHSERAAAAESPPGFGGADADDDDSDSTVASADLPTSAALR
AAAAAATTAAAASADADAPLSLAMVVSAASSSGGFREYGGVLAAPVAARQ
HFTSATAAALRQLERRAEKGRAQTALVECLKALDISDDVKLEMIGAIMRA
*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR036955	AP2/ERF_dom_sf
IPR016177	DNA-bd_dom_sf