mRNA_10898 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Match: A0A835YL86_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL86_9STRA) HSP 1 Score: 626 bits (1615), Expect = 6.620e-226 Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 1
Query: 1 MQMAHLLLLLVAAIAVYASEPDAFQATTAAPSRRXXXXXXXXXXXXXXXXARATNPAPDPTKYNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVPASNTEWFDGKVPGVKYYGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVRGSMLPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVGSIWPTAKANCGGVCAPKSAAAYYTKGSTATCYAQKAAAELGLSGPLQIGGNAMGSGAQSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKITVGALQDLGYKVDYTMADAFDPTGCEPSSIGTAAEDTVIWGGSSGGVVRPDIAMV 1017
MQMAHLLLLLVAAIAVYASEPDAFQATTAAPSRRXXXXXXXXXXXXXXXXARATNPAPDPTKYNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVPASNTEWFDGKVPGVKYYGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVRGSMLPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVGSIWPTAKANCGGVCAPKSAAAYYTKGSTATCYAQKAAAELGLSGPLQIGGNAMGSGAQSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKITVGALQDLGYKVDYTMADAFDPTGCEPSSIGTAAEDTVIWGGSSGGVVRPDIAMV
Sbjct: 1 MQMAHLLLLLVAAIAVYASEPDAFQATTAAPSRRXXXXXXXXXXXXXXXXARATNPAPDPTKYNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVPASNTEWFDGKVPGVKYYGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVRGSMLPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVGSIWPTAKANCGGVCAPKSAAAYYTKGSTATCYAQKAAAELGLSGPLQIGGNAMGSGAQSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKITVGALQDLGYKVDYTMADAFDPTGCEPSSIGTAAEDTVIWGGSSGGVVRPDIAMV 339
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Match: A0A835YMQ2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMQ2_9STRA) HSP 1 Score: 286 bits (732), Expect = 8.140e-91 Identity = 168/324 (51.85%), Postives = 201/324 (62.04%), Query Frame = 1
Query: 154 RATNPAPDPTKYNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVPASNTEWFDGKVPGVKYYGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVRG-SMLPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVG--SIWPTAKANCGGVCAPKSAAAYYTKGSTATCYAQKAAAELGLSGPLQIGGNAM------------------------GSGAQSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKITV-----GALQDLGYKVDYTMADAFDPTGCEPSSIGTAAEDT----VIWGGSSGGVVRPDIAMV 1017
RATNPAPDPTK+NI LKFA T D+KALF AA KWE +IT D++D PA +WF G VPGVKY+GRVDD+VIAA+V +DG LAYSGP Y+RG + LP+SG++FFD DVQPL+D+GSFGDV+LHEMGH+LG+G +WPT + CGG C PKS A+YYTKGST TCYAQKAAAELGL G LQ+G + GS A S +T +L N T NP GALQDLGY VDYT ADAFDP GC+ + AA D+ V+WG +G VV P + V
Sbjct: 92 RATNPAPDPTKFNISLKFAADTPNDIKALFKKAAKKWESVITADVSDFPAWTKDWFGGFVPGVKYFGRVDDIVIAAQVTFLDGVGGT----LAYSGPYYMRGDTKLPISGVLFFDVEDVQPLLDNGSFGDVVLHEMGHVLGIGIEDLWPTLASKCGGACKPKSDASYYTKGSTGTCYAQKAAAELGLKGRLQLGPPILLRERLPRANYFNYHXXXXXXXGIHGSLATSAATLLRDQVPLTDILRLRNATV--TDNPPPDCPPLACHSGALQDLGYTVDYTKADAFDPAGCKRAPALGAAGDSDGSVVVWG--NGNVVSPPVTFV 407
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Match: A0A835ZFE5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFE5_9STRA) HSP 1 Score: 232 bits (591), Expect = 5.420e-66 Identity = 143/277 (51.62%), Postives = 172/277 (62.09%), Query Frame = 1
Query: 187 YNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVPASNTEWFDGKVPGVKYYGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVR-GSMLPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVGSIWPTAKANCGGVCAPKSAA-AYYTKGSTA--TCYAQKAAAELGLSGPLQIG-GNAMGSGAQSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKITVGALQDLGYKVDYTMADAFDPTGCEPSSIGTAAEDTVIWGGSSGGVVRP 1002
YNI L FAP T VKA+F AAA+W+ IIT D+ D +WF G+ Y G VDD+VIAA V IDG +L ++GPV+ R S L +SGIM FDKADV LI DGSF DV+LHEMGH+LG+G+ WPT A+CGG+CAP S+ YY GS + TCYA AAELG GPLQ+ G G+ QLC ELMTG L G G+PLS IT+G +QDLGY+VDYT ADAFDP C+ GT +IW +S VVRP
Sbjct: 140 YNIQLVFAPNTTAAVKAIFNTAAARWQSIITADVPDEGPREDDWFGGQAK-TNYTGSVDDVVIAAAVTYIDGPGK----ILGFAGPVHARPDSQLTISGIMEFDKADVAGLIADGSFVDVVLHEMGHVLGIGTHWPTTAASCGGMCAPFSSGNVYYDDGSDSDGTCYASVKAAELGF-GPLQLETGGGEGTACGHWDEAQLCTELMTGYLD-------GAGSPLSIITIGGMQDLGYEVDYTKADAFDPAVCDARRDGT-----IIW--NSDQVVRP 396
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Match: A0A835ZKJ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKJ1_9STRA) HSP 1 Score: 192 bits (489), Expect = 3.380e-52 Identity = 119/234 (50.85%), Postives = 141/234 (60.26%), Query Frame = 1
Query: 187 YNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVPASNTEWFDGKVPGVKYYGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVRG-SMLPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVGSIWPTAKANCGGVCA------PKSAAAYYTKGSTATCYAQKAAAELGLSGPLQIGGNAM-GSGAQSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKITVGA 864
YNI FAPGT DVKALF AAA+W IIT D+ DVP+ T+WF V Y G VDD+VIAA V I P +L +GP+YVR S LP+SGIM FD+ DV LI DGSF DV+LHEMGH+LGVG++WPT A+CGG+C A AYY G T TCYAQ AAELG+ L++ N G+ QLC ELMTG L P G+ LS IT+ A
Sbjct: 127 YNIQFVFAPGTTADVKALFATAAARWTSIITADVPDVPSDGTDWFYNLF-NVAYTGPVDDVVIAAAVTYIADGPGT---ILGSAGPIYVRSDSQLPISGIMKFDQDDVAGLIADGSFIDVLLHEMGHVLGVGTVWPTTTASCGGMCVVPXXXXXXXARAYYDDGHTGTCYAQVKAAELGIE-QLELEANGRPGTACGHWDEAQLCTELMTGYLNGP-------GSELSVITIAA 348
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Match: A0A835YTG7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTG7_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.920e-46 Identity = 96/196 (48.98%), Postives = 120/196 (61.22%), Query Frame = 1
Query: 160 TNPAPDPTKYNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVPASNT----EWFDGKVPGVKYYGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVR---GSMLPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVGSIWPTAKANCGGVCAPKSAAAYYTKGSTATCYAQKAAAELGLSGPLQIG 726
T P P ++I L+F P T D++ LF AA WE IIT D+ D P + +WFDG VP V VDD++IAA+VG IDG N+LA +GP ++R G LPVSG+M FD ADVQ ID G+F VILHEMGH+LG+G++WPT +NC G C P A Y GST C+A A ELGL PL +G
Sbjct: 141 TQPTTAPA-FHIELRFDPSTSTDIQGLFIMAAQIWERIITADVPDEPDGDARGIDDWFDGDVPSVATNEPVDDVIIAARVGPIDGP----FNILASAGPKFLRSASGLNLPVSGVMNFDIADVQSQIDAGTFLSVILHEMGHVLGIGTLWPTLISNCAGNCVPGGTGATYANGSTGVCFAALKAVELGLVAPLALG 331
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Match: A0A835ZKT3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKT3_9STRA) HSP 1 Score: 164 bits (416), Expect = 2.180e-44 Identity = 122/333 (36.64%), Postives = 160/333 (48.05%), Query Frame = 1
Query: 187 YNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVPASNTEWFDGKVPGVKYYGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVRGSMLPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVG-----------------------------------------------SIWP--TAKANCGGVCAPKSAAAYYTKGSTATCYAQKAAAELGLSGPLQI---------GGNAMGSGAQSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKITVGALQDLGYKVDYTMADAFDPTGCEPSSIGTAAEDTVIWGGSSGGVVRPDIA 1011
+NI L FAPGT +K++F AAA+W+ +IT + DVP+ T+WF G+ Y G VDD+VIAA+V I G+ LP+SG+M FD DV LID G+F +VI+HEMGH+LG +W KA CG +C + A+Y GST CYAQK AA LG+ L+I GG G+ QLC+ELMTG L S G N LS IT+G LQD+GY+VDY+ AD F+P C+ + GT ++W SS V RP +A
Sbjct: 43 FNIQLVFAPGTSGAIKSMFRQAAARWQSVITAGVPDVPSDGTDWFRGEA-FAPYTGAVDDIVIAAQVAHI--------------------GNDLPISGVMHFDIDDVSGLIDVGNFVEVIMHEMGHVLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLGLWQYGLGKARCGTICDENAVRAFYADGSTGKCYAQKMAALLGVD-TLEIVLHYWTETDGGP--GTACFHWDETQLCSELMTGYLNS------GDVNSLSIITIGGLQDIGYQVDYSEADNFNPENCKIAQSGT-----IMW--SSDAVKRPVLA 338
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Match: A0A835Z348_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z348_9STRA) HSP 1 Score: 157 bits (397), Expect = 4.440e-41 Identity = 102/251 (40.64%), Postives = 141/251 (56.18%), Query Frame = 1
Query: 187 YNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVPASNTEWFDGKVPGVKYY-GRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVRGS-----MLPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVGSIWPTAKANCGGVCAPKSAAAY-YTKGSTATCYAQKAAAELGLSGPLQI--GGNAMGSGAQSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKITVGALQDLGYKVDYTMADAF 912
+NI L A GT +V A+F A A+WE +IT DI DV A + +WF+G++ + G VDD+VI +V IDG N LA +GP + R S P+SG+M FD+ D+Q + G+ +LHEMGH+LG+G+ WPT A CG V + KS + Y G+T CYA E+ G L + GS QL +ELMT P+ G +PL+ +T+GA++DLGY VDYT AD+F
Sbjct: 118 FNIQLIAATGTPPEVVAVFEEAKARWEQVITGDIPDVAAVDFDWFNGEMGDADAFSGAVDDVVIGYRVASIDGAD----NTLANAGPRFFRNSDEDMYTRPISGVMTFDEIDIQSQLAAGTLLPTVLHEMGHVLGLGTNWPTP-AGCGQVASCKSGTPFQYASGATGDCYADLKYKEIVSGGILMLETATGDEGSDCSHWSEAQLQSELMT-----PSTSLSGVPDPLTIVTIGAMRDLGYSVDYTAADSF 358
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Match: A0A836CQF3_9STRA (Cation_ATPase_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQF3_9STRA) HSP 1 Score: 156 bits (394), Expect = 1.580e-38 Identity = 114/286 (39.86%), Postives = 145/286 (50.70%), Query Frame = 1
Query: 187 YNIVLKFAPGTREDVKALFTAAAAKWEG------IITKDITDVPASNTE---WFDGKVPGV-----------KYYGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVRGSM---------LPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVGSIWPTA----------KANCGGVCAPKSAAAYYTKGSTATCYAQKAAAELGLS-GP---LQIGGNAMGSGAQSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKITVGALQDLGYKVDYTMADAFD 915
+NI L A GT + F A A+W+ +I D+ DVP S T WFDG + + +YYG VDD+VI K+ IDG NG VL +G YVRG +P+SG M FD AD LI +G F V+LHEMGH+LG+G+ WPT A CG C P YYT G+T C+AQ+ +L L GP L+ G + + QL NELMTG L NPLS IT+GAL DLGY+VDY++AD F+
Sbjct: 136 FNIQLIAADGTPDKYHEYFAKAKARWQAKARRQQVIVGDVLDVPKSTTPVNGWFDGNLGTMGSGGQRIVATNEYYGNVDDIVIGYKITYIDG--KNG--VLGQAGSTYVRGGNVSHDASQMDIPISGTMEFDSADADELIKEGVFDQVVLHEMGHVLGIGN-WPTTLNRCGSCEVKHATCGDACEP-----YYTSGATGACHAQQQFEKLDLGVGPNLLLETKGG-ISTECTHWSEEQLGNELMTGWLDG--------NNPLSTITIGALHDLGYQVDYSVADPFE 402
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Match: A0A836CB38_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB38_9STRA) HSP 1 Score: 143 bits (361), Expect = 8.560e-36 Identity = 107/269 (39.78%), Postives = 134/269 (49.81%), Query Frame = 1
Query: 151 ARATNPAP-DPTKYNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVP-ASNTEWFDGKVPGVKYYGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVRG---------SMLPVSGIMFFDKADVQPLIDDGSFGDVILHEMGHILGVGSIWPTAKANCGGVCAPKSAAAYYT----KGSTATCYAQKAAAELGLSGPLQIGGNAMGSGAQSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKITVGALQDLGYKVDYTMADAF 912
++ +PAP P +NIVL PGT FT A +WE IIT D+ A WF G Y VDDLVIA V KIDG NVL +GP+Y R + LP+SG M FD AD L+ G F V+LHEMGH+LG+GS+WPT K+NCG +YT KG TC A A+ + ++ +G G + L G L S + PLSKIT+ AL+DLGYKVDY+ AD F
Sbjct: 124 SKKKSPAPCRPALFNIVLVPVPGTDPKYTKYFTQAKERWESIITHDLVGYGNAPPGGWFQD---GPAYTEPVDDLVIAYSVEKIDGEG----NVLGTAGPLYERNDPVSRKRGEANLPLSGTMQFDIADAARLVKAGVFQSVVLHEMGHVLGIGSLWPTRKSNCG----------FYTRGKKKGQPPTCSTYTAKADGTCAAQVEFSKLDLGRGKR----------LKMGTLDSYKRKP-----PLSKITIAALKDLGYKVDYSQADKF 360
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Match: A0A835YSD2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD2_9STRA) HSP 1 Score: 145 bits (365), Expect = 9.350e-35 Identity = 120/332 (36.14%), Postives = 154/332 (46.39%), Query Frame = 1
Query: 151 ARATNPAPDPTKYNIVLKFAPGTREDVKALFTAAAAKWEGIITKDITDVPASNTEWFDGKVPGVKY----------------------------------------YGRVDDLVIAAKVGKIDGTPSNGLNVLAYSGPVYVRGSML-PVSGIMFFD--KADVQPLIDDGSF-GDVILHEMGHILGVG----------SIWPTAKANCGGVCAPKSAA-AYYTKGSTATCYAQKAAAELGLSGPLQIGGNAMGSGA-QSLGLRQLCNELMTGLLGSPNGRTGGTGNPLSKIT-----------------VGALQDLGYKVDYTMADAFDPTGC 927
AR T P+ + YNI L F+ T D++A FTAAAA+W+ IIT D+ DV A N +W G +PGV Y G VDD+VI V +D T ++ + S +Y R + P+SG+M + ++ L+ DG F V+LH M +LG G + ++ CG C KSA YT G+ ATC AQ A ELGLS PL + A GS A + QLCNELMT L GT NPLS IT +GA QDLGY VDY+ ADAF+P GC
Sbjct: 640 ARPTTPS---SGYNIQLVFSAATTPDIQAAFTAAAARWQTIITGDVWDVSAMNIDWLAGAIPGVSYSPRAPLHVLPNPSPDPNSWMPENLVAHLSHLVRLRSLAVAQGAVDDIVIGVDV-VLDDTLTSSRPISGSSQILYFRSGLAQPISGVMKYKIRRSSAAALVADGGFFRTVVLHTMAQVLGYGWMAYASTSYGKMASSSPTKCGSGC--KSAGNPLYTAGAVATCNAQLKATELGLSDPLML--EASGSSACYAWSETQLCNELMTSALS-------GTVNPLSAITMSVVEVEVEIETLSVITIGAFQDLGYSVDYSKADAFNPAGC 956 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350733 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10898 ID=mRNA_10898|Name=jgi.p|Trimin1|350733|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1020bp|location=Sequence derived from alignment at Contig_70:448904..462444- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGATGGCGCACCTGCTGCTGCTGCTGGTGGCGGCGATCGCTGTCTAback to top protein sequence of jgi.p|Trimin1|350733 >Trimin1|350733|estExt_Genemark1.C_Ctg_700055 ID=Trimin1|350733|estExt_Genemark1.C_Ctg_700055|Name=jgi.p|Trimin1|350733|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=340bp MQMAHLLLLLVAAIAVYASEPDAFQATTAAPSRRPTRRPTSKAKGTPQPTback to top mRNA from alignment at Contig_70:448904..462444- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10898 ID=mRNA_10898|Name=jgi.p|Trimin1|350733|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=13541bp|location=Sequence derived from alignment at Contig_70:448904..462444- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_70:448904..462444- >mRNA_10898 ID=mRNA_10898|Name=jgi.p|Trimin1|350733|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1020bp|location=Sequence derived from alignment at Contig_70:448904..462444- (Tribonema minus UTEX_B_3156 )back to top |