mRNA_2632 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|158914
Unique Name	mRNA_2632
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|158914 vs. uniprot
Match: A0A835YP88_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP88_9STRA)

HSP 1 Score: 210 bits (534), Expect = 5.140e-61
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 1

Query:    1 MTTHAADVDVQRDALAAMERLCANDANNAKLGEAGACERLAESMRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDAEVRWHAIXXXXXXXXXXXXXXXXXXXXXXGHLIDGMRTIAVATHMIIIGAXXXXXXXXXXXXXXXXXXXXXXXVLFMRGHSGSATIEQEALAVRVMTKLGXXXXXXXXXXXXXXXXLVADLMWLHVADVGVQRHVLKAVAML 819
            MTTHAADVDVQRDALAAMERLCANDANNAKLGEAGACERLAESMRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDAEVRWHAIXXXXXXXXXXXXXXXXXXXXXXGHLIDGMRTIAVATHMIIIGAXXXXXXXXXXXXXXXXXXXXXXXVLFMRGHSGSATIEQEALAVRVMTKLGXXXXXXXXXXXXXXXXLVADLMWLHVADVGVQRHVLKAVAML
Sbjct:    1 MTTHAADVDVQRDALAAMERLCANDANNAKLGEAGACERLAESMRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHAPDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYDAEVRWHAIXXXXXXXXXXXXXXXXXXXXXXGHLIDGMRTIAVATHMIIIGAXXXXXXXXXXXXXXXXXXXXXXXVLFMRGHSGSATIEQEALAVRVMTKLGXXXXXXXXXXXXXXXXLVADLMWLHVADVGVQRHVLKAVAML 273

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|158914 vs. uniprot

BLAST of jgi.p|Trimin1|158914 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YP88_9STRA	5.140e-61	100.00	Armadillo-type protein n=1 Tax=Tribonema minus Tax...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_7	contig	Contig_7:1507982..1509115 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|158914\|e_gw1.7.340.1
Hectar predicted targeting category	other localisation
TranscriptId	159236
Track	FilteredModels1
ProteinId	158914

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|158914	gene_2632	Tribonema minus UTEX_B_3156	gene	Contig_7 1507982..1509115 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_2632_1	exon_2632_1	Tribonema minus UTEX_B_3156	exon	Contig_7 1507982..1509115 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_2632	CDS_2632	Tribonema minus UTEX_B_3156	CDS	Contig_7 1507982..1509115 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|158914	Trimin1\|158914\|e_gw1.7.340.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_7 1507982..1509115 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_7:1507982..1509115-
coding sequence from alignment at Contig_7:1507982..1509115-

spliced messenger RNA

>mRNA_2632 ID=mRNA_2632|Name=jgi.p|Trimin1|158914|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1134bp|location=Sequence derived from alignment at Contig_7:1507982..1509115- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGACGCATGCAGCCGACGTGGACGTGCAACGGGATGCACTAGCAGC
AATGGAGAGGCTCTGCGCGAACGACGCCAACAACGCCAAGCTCGGCGAGG
CAGGCGCATGCGAGCGGCTTGCTGAGAGTATGCGCGCGCACGTCAGCAGC
GCCGCCATACAGCAGCAAGCACTGAGAGCGATCGCGCAGCTCGGCAAAAA
CGTCGCCAACAGGGTCAAGCTCGGCGAGGCGGGGGTGTGCGACCTTCTCG
CTGAAAGGATGCGGGAGCACGCACCCGACGCGCTGCGGGCAGTCGTAACG
CTCGGCAAGGGCAGCGCCAACAGGAGCAAGCTCGGGGAGGCTGGGGTCTG
TAAGCTGGTCATGCGAGCGCTGACGATGCACGCATACGACGCCGAGGTGC
GGTGGCACGCGATACAGGCGATCGCGCGACTCGGCGAGAACGACGCCAAC
AAAGTCAAGCTCGGCGAGGCGGGGGCGTGCGGGCATCTCATAGATGGAAT
GCGCACAATTGCCGTCGCCACGCACATGATTATCATTGGTGCGGTCGGGA
CGCTCTGCGAGAACGACGCCAACAACGCCAAGTTCGGCGAGGCGGGGGCA
TGCGAGCGCCTTGTATTATTCATGCGGGGCCACAGCGGCAGCGCCACCAT
AGAACAAGAAGCACTGGCGGTGAGGGTGATGACAAAGCTCGGCAAGAACA
GCCTCAACAACGCCAAGCTCGGCGAGGCCAGGGCGTGTGAGCTCGTTGCG
GACTTGATGTGGCTTCACGTAGCCGACGTCGGCGTGCAGCGGCACGTGCT
AAAGGCGGTCGCGATGCTCGCCGAGAACGACGCCAACAATGCAAAGCTCG
GCGAGGCGGGGGCGTGCGGCCTGCTCGTCGAATCGATGCGGGCGCATGCA
GACGACGCCGCTGTCCAAGCATTTGCACTGTGCGCAATCGAAACGTTTGG
CAGGGATGGCGCCAACAGGGTCGAGCTCGGCCAGGCTGGGGTTTGTGAAG
TGCTTGTACACGCAATGCGGGCGTGTGCGGGGCACGCGGTACGCCTCGCT
GCTGTTGTTCGGGCGATCGCAGTGCTCAGCCGTAACGATGCCAACAGTGC
ACGTCTTGGCCTTCTGCTGTCGCAGCCGCAGTAG

protein sequence of jgi.p|Trimin1|158914

>Trimin1|158914|e_gw1.7.340.1 ID=Trimin1|158914|e_gw1.7.340.1|Name=jgi.p|Trimin1|158914|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=378bp
MTTHAADVDVQRDALAAMERLCANDANNAKLGEAGACERLAESMRAHVSS
AAIQQQALRAIAQLGKNVANRVKLGEAGVCDLLAERMREHAPDALRAVVT
LGKGSANRSKLGEAGVCKLVMRALTMHAYDAEVRWHAIQAIARLGENDAN
KVKLGEAGACGHLIDGMRTIAVATHMIIIGAVGTLCENDANNAKFGEAGA
CERLVLFMRGHSGSATIEQEALAVRVMTKLGKNSLNNAKLGEARACELVA
DLMWLHVADVGVQRHVLKAVAMLAENDANNAKLGEAGACGLLVESMRAHA
DDAAVQAFALCAIETFGRDGANRVELGQAGVCEVLVHAMRACAGHAVRLA
AVVRAIAVLSRNDANSARLGLLLSQPQ*

mRNA from alignment at Contig_7:1507982..1509115-

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2632 ID=mRNA_2632|Name=jgi.p|Trimin1|158914|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1134bp|location=Sequence derived from alignment at Contig_7:1507982..1509115- (Tribonema minus UTEX_B_3156 )
ATGACGACGCATGCAGCCGACGTGGACGTGCAACGGGATGCACTAGCAGC
AATGGAGAGGCTCTGCGCGAACGACGCCAACAACGCCAAGCTCGGCGAGG
CAGGCGCATGCGAGCGGCTTGCTGAGAGTATGCGCGCGCACGTCAGCAGC
GCCGCCATACAGCAGCAAGCACTGAGAGCGATCGCGCAGCTCGGCAAAAA
CGTCGCCAACAGGGTCAAGCTCGGCGAGGCGGGGGTGTGCGACCTTCTCG
CTGAAAGGATGCGGGAGCACGCACCCGACGCGCTGCGGGCAGTCGTAACG
CTCGGCAAGGGCAGCGCCAACAGGAGCAAGCTCGGGGAGGCTGGGGTCTG
TAAGCTGGTCATGCGAGCGCTGACGATGCACGCATACGACGCCGAGGTGC
GGTGGCACGCGATACAGGCGATCGCGCGACTCGGCGAGAACGACGCCAAC
AAAGTCAAGCTCGGCGAGGCGGGGGCGTGCGGGCATCTCATAGATGGAAT
GCGCACAATTGCCGTCGCCACGCACATGATTATCATTGGTGCGGTCGGGA
CGCTCTGCGAGAACGACGCCAACAACGCCAAGTTCGGCGAGGCGGGGGCA
TGCGAGCGCCTTGTATTATTCATGCGGGGCCACAGCGGCAGCGCCACCAT
AGAACAAGAAGCACTGGCGGTGAGGGTGATGACAAAGCTCGGCAAGAACA
GCCTCAACAACGCCAAGCTCGGCGAGGCCAGGGCGTGTGAGCTCGTTGCG
GACTTGATGTGGCTTCACGTAGCCGACGTCGGCGTGCAGCGGCACGTGCT
AAAGGCGGTCGCGATGCTCGCCGAGAACGACGCCAACAATGCAAAGCTCG
GCGAGGCGGGGGCGTGCGGCCTGCTCGTCGAATCGATGCGGGCGCATGCA
GACGACGCCGCTGTCCAAGCATTTGCACTGTGCGCAATCGAAACGTTTGG
CAGGGATGGCGCCAACAGGGTCGAGCTCGGCCAGGCTGGGGTTTGTGAAG
TGCTTGTACACGCAATGCGGGCGTGTGCGGGGCACGCGGTACGCCTCGCT
GCTGTTGTTCGGGCGATCGCAGTGCTCAGCCGTAACGATGCCAACAGTGC
ACGTCTTGGCCTTCTGCTGTCGCAGCCGCAGTAG

Coding sequence (CDS) from alignment at Contig_7:1507982..1509115-

>mRNA_2632 ID=mRNA_2632|Name=jgi.p|Trimin1|158914|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1134bp|location=Sequence derived from alignment at Contig_7:1507982..1509115- (Tribonema minus UTEX_B_3156 )
ATGACGACGCATGCAGCCGACGTGGACGTGCAACGGGATGCACTAGCAGC
AATGGAGAGGCTCTGCGCGAACGACGCCAACAACGCCAAGCTCGGCGAGG
CAGGCGCATGCGAGCGGCTTGCTGAGAGTATGCGCGCGCACGTCAGCAGC
GCCGCCATACAGCAGCAAGCACTGAGAGCGATCGCGCAGCTCGGCAAAAA
CGTCGCCAACAGGGTCAAGCTCGGCGAGGCGGGGGTGTGCGACCTTCTCG
CTGAAAGGATGCGGGAGCACGCACCCGACGCGCTGCGGGCAGTCGTAACG
CTCGGCAAGGGCAGCGCCAACAGGAGCAAGCTCGGGGAGGCTGGGGTCTG
TAAGCTGGTCATGCGAGCGCTGACGATGCACGCATACGACGCCGAGGTGC
GGTGGCACGCGATACAGGCGATCGCGCGACTCGGCGAGAACGACGCCAAC
AAAGTCAAGCTCGGCGAGGCGGGGGCGTGCGGGCATCTCATAGATGGAAT
GCGCACAATTGCCGTCGCCACGCACATGATTATCATTGGTGCGGTCGGGA
CGCTCTGCGAGAACGACGCCAACAACGCCAAGTTCGGCGAGGCGGGGGCA
TGCGAGCGCCTTGTATTATTCATGCGGGGCCACAGCGGCAGCGCCACCAT
AGAACAAGAAGCACTGGCGGTGAGGGTGATGACAAAGCTCGGCAAGAACA
GCCTCAACAACGCCAAGCTCGGCGAGGCCAGGGCGTGTGAGCTCGTTGCG
GACTTGATGTGGCTTCACGTAGCCGACGTCGGCGTGCAGCGGCACGTGCT
AAAGGCGGTCGCGATGCTCGCCGAGAACGACGCCAACAATGCAAAGCTCG
GCGAGGCGGGGGCGTGCGGCCTGCTCGTCGAATCGATGCGGGCGCATGCA
GACGACGCCGCTGTCCAAGCATTTGCACTGTGCGCAATCGAAACGTTTGG
CAGGGATGGCGCCAACAGGGTCGAGCTCGGCCAGGCTGGGGTTTGTGAAG
TGCTTGTACACGCAATGCGGGCGTGTGCGGGGCACGCGGTACGCCTCGCT
GCTGTTGTTCGGGCGATCGCAGTGCTCAGCCGTAACGATGCCAACAGTGC
ACGTCTTGGCCTTCTGCTGTCGCAGCCGCAGTAG