mRNA_2560 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|86003
Unique NamemRNA_2560
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|86003 vs. uniprot
Match: A0A836C9Q5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q5_9STRA)

HSP 1 Score: 261 bits (666), Expect = 8.750e-87
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 3 
Query:  108 MQTCRSPAFAAVGEGNLPDEAYAFLKLIQLQKDWAAIGKTVREREDVAGDEWQNVQLYLRKMYQQGEELKGMAKGFAEPKRAQALALVEAVRAEARAADKPAGARDRDAFLAAQRSIEAKIGEFVDLFQDVPDEL 512
            MQTCRSPAFAAVGEGNLPDEAYAFLKLIQLQKDWAAIGKTVREREDVAGDEWQNVQLYLRKMYQQGEELKGMAKGFAEPKRAQALALVEAVRAEARAADKPAGARDRDAFLAAQRSIEAKIGEFVDLFQDVPDEL
Sbjct:    1 MQTCRSPAFAAVGEGNLPDEAYAFLKLIQLQKDWAAIGKTVREREDVAGDEWQNVQLYLRKMYQQGEELKGMAKGFAEPKRAQALALVEAVRAEARAADKPAGARDRDAFLAAQRSIEAKIGEFVDLFQDVPDEL 135
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BLAST of jgi.p|Trimin1|86003 vs. uniprot
Match: D8LPW5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPW5_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 5.260e-31
Identity = 67/136 (49.26%), Postives = 93/136 (68.38%), Query Frame = 3 
Query:  120 RSPAFAA----VGEGNLPDEAYAFLKLIQLQKDWAAIGKTV-REREDVAGDEWQNVQLYLRKMYQQGEELKGMAKGFAEPKRAQALALVEAVRAEARAADKPAGARDRDAFLAAQRSIEAKIGEFVDLFQDVPDEL 512
            + P FA+    VGEG LPD A  F  L+++QKDWAA+GK++ R+  DV  DEW+NV L+LRK+YQ G EL+ +A  F   K+  ALALV +++ E +AAD PA  +D  AF+ AQ S++ K  +F++LF DVP EL
Sbjct:  110 QGPEFASAEVGVGEGGLPDGARQFSNLVKVQKDWAALGKSIERQGADVTADEWKNVALFLRKVYQLGGELEYLAGTFPPDKKKSALALVRSIQKEVQAADVPAREKDAAAFMKAQASVQKKFEDFMELFNDVPSEL 245
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BLAST of jgi.p|Trimin1|86003 vs. uniprot
Match: A0A7S2SX15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SX15_9STRA)

HSP 1 Score: 112 bits (281), Expect = 6.550e-28
Identity = 56/131 (42.75%), Postives = 88/131 (67.18%), Query Frame = 3 
Query:  120 RSPAFAAVGEGNLPDEAYAFLKLIQLQKDWAAIGKTVREREDVAGDEWQNVQLYLRKMYQQGEELKGMAKGFAEPKRAQALALVEAVRAEARAADKPAGARDRDAFLAAQRSIEAKIGEFVDLFQDVPDEL 512
            R  A A VGEG LP+ A  F  +++++ +W  +GKTV++ E+++  +W+N+Q +LR+ YQ G ++K +AKG ++ K+A A   VEA++     ADKPA   DR AFL AQ+ +  +I +F++L  DVPDEL
Sbjct:   45 RVSAAAPVGEGGLPEGARQFDNVLRMRVEWDVMGKTVQDSEELSAAQWRNIQGFLRRAYQVGNDMKFVAKGVSKDKQAAAFKAVEAIQKSIEGADKPAQQNDRAAFLVAQKDVARQIADFLELISDVPDEL 175
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BLAST of jgi.p|Trimin1|86003 vs. uniprot
Match: A0A7S3NJV4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJV4_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 9.590e-15
Identity = 43/126 (34.13%), Postives = 70/126 (55.56%), Query Frame = 3 
Query:  138 AVGEGNLPDEAYAFLKLIQLQKDWAAIGKTVREREDVA-GDEWQNVQLYLRKMYQQGEELKGMAKGFAEPKRAQALALVEAVRAEARAADKPAGARDRDAFLAAQRSIEAKIGEFVDLFQDVPDEL 512
            A  EG+LPD A+ F + I++Q +W   G  +++   V    EW+ V L+LRK+Y +GE++  + +   + K+  A  +    R+  + ADKP   +DR   + A     A +  F++L QDVPDEL
Sbjct:   49 ARNEGDLPDGAFQFDRFIKVQSEWNRFGSRLKDESQVIDAKEWEAVGLFLRKLYDEGEDMIFITQNLDKTKQNAAKEIATRFRSSVKGADKPVREQDRPVVIYAYNETSALMRSFLELLQDVPDEL 174
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|86003 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836C9Q5_9STRA8.750e-87100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LPW5_ECTSI5.260e-3149.26Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SX15_9STRA6.550e-2842.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3NJV4_9STRA9.590e-1534.13Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_7contigContig_7:765384..767101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|86003|CE86002_33
Max annot lvl2759|Eukaryota
EggNOG OGs2E2BQ@1|root,2S9JQ@2759|Eukaryota
Evalue1.53e-32
Seed ortholog2880.D8LPW5
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPsbQ-like domain
Ec32 orthologEc-15_001890.1
TranscriptId86325
TrackFilteredModels1
ProteinId86003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|86003gene_2560Tribonema minus UTEX_B_3156 geneContig_7 765384..767101 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|86003Trimin1|86003|CE86002_33Tribonema minus UTEX_B_3156 polypeptideContig_7 765491..766993 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_2560_1exon_2560_1Tribonema minus UTEX_B_3156 exonContig_7 765384..765602 +
exon_2560_2exon_2560_2Tribonema minus UTEX_B_3156 exonContig_7 766215..766294 +
exon_2560_3exon_2560_3Tribonema minus UTEX_B_3156 exonContig_7 766778..767101 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_2560UTR5_2560Tribonema minus UTEX_B_3156 five_prime_UTRContig_7 765384..765490 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_2560CDS_2560Tribonema minus UTEX_B_3156 CDSContig_7 765491..765602 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_2560UTR3_2560Tribonema minus UTEX_B_3156 three_prime_UTRContig_7 766994..767101 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_2560 ID=mRNA_2560|Name=jgi.p|Trimin1|86003|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=623bp|location=Sequence derived from alignment at Contig_7:765384..767101+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGCAAGTGGGGCAGGGCAGGCAACCTGCCACCATGTAAATAGAAATAAA
AAGGCGAACTCCTCGGTCAGCTTCTGAACATCAATTGCCACGACATTTGT
CGTCCAAATGCAAACGTGCAGGTCGCCTGCATTTGCCGCAGTGGGAGAGG
GCAACCTACCAGATGAGGCGTATGCGTTTCTCAAGCTGATCCAGCTGCAG
AAGGACTGGGCGGCGATAGGCAAGACGGTGCGGGAGCGGGAGGACGTCGC
CGGCGACGAGTGGCAGAATGTGCAGCTGTACCTGCGCAAGATGTACCAGC
AAGGCGAGGAGCTCAAGGGCATGGCCAAGGGTTTCGCGGAGCCGAAGCGC
GCGCAGGCGCTAGCGCTGGTGGAGGCCGTCAGGGCGGAGGCGCGCGCCGC
CGACAAGCCCGCCGGCGCGCGCGACCGCGACGCCTTCCTCGCCGCGCAGC
GCAGCATCGAGGCCAAGATCGGGGAGTTTGTGGACTTGTTCCAGGACGTT
CCTGACGAGCTCTGATGCCAGCGCGCATGTGCGGAGGATGTGGCGAGTGC
GGCGGTGTGGCAGCGCTCGCGCGTGCGCGCTTGAGGGAGGCGAGAGGGGG
AATGGCTGGCGCACGGAAGGGGG
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protein sequence of jgi.p|Trimin1|86003

>Trimin1|86003|CE86002_33 ID=Trimin1|86003|CE86002_33|Name=jgi.p|Trimin1|86003|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp
MQTCRSPAFAAVGEGNLPDEAYAFLKLIQLQKDWAAIGKTVREREDVAGD
EWQNVQLYLRKMYQQGEELKGMAKGFAEPKRAQALALVEAVRAEARAADK
PAGARDRDAFLAAQRSIEAKIGEFVDLFQDVPDEL*
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mRNA from alignment at Contig_7:765384..767101+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2560 ID=mRNA_2560|Name=jgi.p|Trimin1|86003|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1718bp|location=Sequence derived from alignment at Contig_7:765384..767101+ (Tribonema minus UTEX_B_3156 )
CAGCAAGTGGGGCAGGGCAGGCAACCTGCCACCATGTAAATAGAAATAAA
AAGGCGAACTCCTCGGTCAGCTTCTGAACATCAATTGCCACGACATTTGT
CGTCCAAATGCAAACGTGCAGGTCGCCTGCATTTGCCGCAGTGGGAGAGG
GCAACCTACCAGATGAGGCGTATGCGTTTCTCAAGCTGATCCAGCTGCAG
AAGGACTGGGCGGCGATAGGTGAGCGTTGCTGAGCACTGTTGCTGCTGCT
GCCGACATCGGCCTGAGGAGAGTTGCTGGTCATCTGATGCGTGCAGGCCC
ATCAGTAGCATCAATGGCAGTGTGTGCAGGCAACAGGCGCGTTTTCGTGC
ACCACCACTTGCAGCAGCACATAACATGAGTACGCTGTAGCGCACATTGA
AGACAGAGGGCAAGTATCGCCGTCTGTCACTGTCACTCTTGTTTTCATCG
TCCAACATCAGCGCTGCAGTGTCATCCCAGACCCTGTGCTGACGCGCCGC
GGGCAGGCGGTCTCTGCCAGAGCGCTGCTGCCTCACGTGAACGCATGGCG
GGCCGCCTGACCGCCGCTAGCGCATGGGCGCATTGAGATCGGTGTTGATT
CATGGAATTGCTCTCGCCAGTTAGCGATGATGTTCGTCGTGCACATGTTC
TGGGTCAGCGCTCAGCAAACTCAAGATGGGGCGCGCAGTGCGGGGGTAGG
GTTAGGGGTAGGGCTCAGGCTAGTAAGTCATCACGGTACGCCGCGCTGCC
GCGCGCTCTCGCCAGCGACGTGGCAGCTTGATGCGCGAGGCATTCCATCA
CAGCGTCATGTTTCACATGCGGCGCGCGCAGGCAAGACGGTGCGGGAGCG
GGAGGACGTCGCCGGCGACGAGTGGCAGAATGTGCAGCTGTACCTGCGCA
AGATGTACCAGGTGCGTTTTCGTCAATCTCTGTGTGCTTCGGCTGCGAGC
GCCGGTCTCCGATGGCCGCACGCGTTGCGGGTGTGGACGGAGGCGTCGGT
GCTGTATGCAGCGAGGTCATTAACTGTTGAAGCTGCGCGGCGGACAGCAT
CTGGACAGGACGCGGCGCATCGAAGCGGTGTGGCGGTGTGAATTTTGCGC
TCGCAATGACCCCGCTGGCGATGGTGGCATACGCAGGTGCTTGAGCTACC
TGCAGAGAGTCTGCGCAGCGCCGCACAGGTCTCCGCTATGAGGCTGTGCT
GTGCTGTGCAGCATCACCTCGGTACTGGCGCGTTTGCGTCATGCAGCGCG
CAGCTCATGCCGCTGCAGAGGGGCTGCCCTTGCAGAGTCCTTGCTCTTTG
AGCTGTGAGCCTCTCGCGCTGGCGCACAAGCCCCCGGTCGCGCTCACGCC
GCTGACGCGCGCCGCCGCCCCGCTTCACCAACCGCTCTGCGCAGCAAGGC
GAGGAGCTCAAGGGCATGGCCAAGGGTTTCGCGGAGCCGAAGCGCGCGCA
GGCGCTAGCGCTGGTGGAGGCCGTCAGGGCGGAGGCGCGCGCCGCCGACA
AGCCCGCCGGCGCGCGCGACCGCGACGCCTTCCTCGCCGCGCAGCGCAGC
ATCGAGGCCAAGATCGGGGAGTTTGTGGACTTGTTCCAGGACGTTCCTGA
CGAGCTCTGATGCCAGCGCGCATGTGCGGAGGATGTGGCGAGTGCGGCGG
TGTGGCAGCGCTCGCGCGTGCGCGCTTGAGGGAGGCGAGAGGGGGAATGG
CTGGCGCACGGAAGGGGG
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Coding sequence (CDS) from alignment at Contig_7:765384..767101+

>mRNA_2560 ID=mRNA_2560|Name=jgi.p|Trimin1|86003|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=408bp|location=Sequence derived from alignment at Contig_7:765384..767101+ (Tribonema minus UTEX_B_3156 )
ATGCAAACGTGCAGGTCGCCTGCATTTGCCGCAGTGGGAGAGGGCAACCT
ACCAGATGAGGCGTATGCGTTTCTCAAGCTGATCCAGCTGCAGAAGGACT
GGGCGGCGATAGGCAAGACGGTGCGGGAGCGGGAGGACGTCGCCGGCGAC
GAGTGGCAGAATGTGCAGCTGTACCTGCGCAAGATGTACCAGCAAGGCGA
GGAGCTCAAGGGCATGGCCAAGGGTTTCGCGGAGCCGAAGCGCGCGCAGG
CGCTAGCGCTGGTGGAGGCCGTCAGGGCGGAGGCGCGCGCCGCCGACAAG
CCCGCCGGCGCGCGCGACCGCGACGCCTTCCTCGCCGCGCAGCGCAGCAT
CGAGGCCAAGATCGGGGAGTTTGTGGACTTGTTCCAGGACGTTCCTGACG
AGCTCTGA
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