mRNA_12956 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350709
Unique Name	mRNA_12956
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350709 vs. uniprot
Match: A0A835YN72_9STRA (GCK domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN72_9STRA)

HSP 1 Score: 356 bits (913), Expect = 5.980e-122
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 3

Query:   87 MLQARAASFALLSVLHASAAAAPASSEPPHPSSEVEHAAVETKQQDEEPEQKGEGGAAPKGEEDWCSPYPEEDYFVDENEPEEPTTCSLCIMMKNGPCPMTFRRWARCTEVAKERGEDDKVACRCANIFMDLYRCMNENPNYFMIEKDGQGNDTAEDAHAAESASDSPTEADAAAVAAAGVATA 638
            MLQARAASFALLSVLHASAAAAPASSEPPHPSSEVEHAAVETKQQDEEPEQKGEGGAAPKGEEDWCSPYPEEDYFVDENEPEEPTTCSLCIMMKNGPCPMTFRRWARCTEVAKERGEDDKVACRCANIFMDLYRCMNENPNYFMIEKDGQGNDTAEDAHAAESASDSPTEADAAAVAAAGVATA
Sbjct:    1 MLQARAASFALLSVLHASAAAAPASSEPPHPSSEVEHAAVETKQQDEEPEQKGEGGAAPKGEEDWCSPYPEEDYFVDENEPEEPTTCSLCIMMKNGPCPMTFRRWARCTEVAKERGEDDKVACRCANIFMDLYRCMNENPNYFMIEKDGQGNDTAEDAHAAESASDSPTEADAAAVAAAGVATA 184

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350709 vs. uniprot

BLAST of jgi.p|Trimin1|350709 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YN72_9STRA	5.980e-122	100.00	GCK domain-containing protein n=1 Tax=Tribonema mi...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_69	contig	Contig_69:666121..669443 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350709\|estExt_Genemark1.C_Ctg_690060
Description	GCK
COG category	S
Max annot lvl	2759\|Eukaryota
EggNOG OGs	2CP4U@1\|root,2S7G4@2759\|Eukaryota
Evalue	2.92e-06
Seed ortholog	38833.XP_003062048.1
Hectar predicted targeting category	signal peptide
TranscriptId	351031
Track	FilteredModels1
ProteinId	350709

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350709	gene_12956	Tribonema minus UTEX_B_3156	gene	Contig_69 666121..669443 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350709	Trimin1\|350709\|estExt_Genemark1.C_Ctg_690060	Tribonema minus UTEX_B_3156	polypeptide	Contig_69 666207..669150 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12956_1	exon_12956_1	Tribonema minus UTEX_B_3156	exon	Contig_69 666121..666526 +
exon_12956_2	exon_12956_2	Tribonema minus UTEX_B_3156	exon	Contig_69 667789..667940 +
exon_12956_3	exon_12956_3	Tribonema minus UTEX_B_3156	exon	Contig_69 669068..669443 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_12956	UTR5_12956	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_69 666121..666206 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12956	CDS_12956	Tribonema minus UTEX_B_3156	CDS	Contig_69 666207..666526 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_12956	UTR3_12956	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_69 669151..669443 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_69:666121..669443+
coding sequence from alignment at Contig_69:666121..669443+

spliced messenger RNA

>mRNA_12956 ID=mRNA_12956|Name=jgi.p|Trimin1|350709|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=934bp|location=Sequence derived from alignment at Contig_69:666121..669443+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGACCACAATCAGGAGCCCACGACACACGGATTGCTATTGCGTAGAGGT
AGCAGCGGTGTGAATGATGGTCCTGGTATTGCCTCGATGCTGCAGGCACG
GGCTGCGAGCTTCGCATTGCTATCTGTACTGCACGCCTCAGCTGCGGCAG
CACCAGCATCATCAGAACCGCCACACCCCAGCAGCGAAGTCGAACACGCC
GCAGTAGAAACCAAGCAGCAGGACGAGGAGCCGGAGCAGAAAGGCGAAGG
CGGTGCAGCGCCGAAGGGAGAGGAGGACTGGTGCAGTCCGTACCCGGAGG
AGGACTATTTTGTGGATGAAAACGAGCCAGAGGAGCCCACCACGTGCAGC
CTGTGCATCATGATGAAGAATGGACCCTGCCCCATGACATTCAGGCGTTG
GGCCAGGTGCACGGAAGTTGCGAAGGAGCGCGGCGAAGACGACAAGGTGG
CATGTCGCTGCGCGAACATATTCATGGACCTCTACCGCTGCATGAATGAG
AACCCCAACTACTTCATGATTGAGAAGGATGGACAGGGCAACGACACAGC
TGAAGACGCGCACGCCGCTGAATCCGCCAGCGACTCTCCTACAGAAGCCG
ACGCAGCAGCAGTGGCAGCTGCTGGAGTGGCCACTGCATAGAGCCAGGGT
AACCATGATGACCCTGGCTTTACACTCAGTCCTGGGCCTTGCAGCTCCGG
GGCTGGCACCAGGGTTACCTCAACCCTAATCCTAACCCTAACCCCAGAGC
TGCAAAAGCTAGCCGGGGGGTGGGAGTACTTACCGCAGCTGGAACACATT
GTGGAGAAAGATGGGGGGGTATGCAGCGATAGCTGCATTGGCAGCGTGCT
GGCACATAGAGCAGGCACTTCTTCAAGTGTCACGTGGCTCAAGGAATCAC
ACAAAGGATGGAATCACATGCACATGGTTACCAA

protein sequence of jgi.p|Trimin1|350709

>Trimin1|350709|estExt_Genemark1.C_Ctg_690060 ID=Trimin1|350709|estExt_Genemark1.C_Ctg_690060|Name=jgi.p|Trimin1|350709|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=185bp
MLQARAASFALLSVLHASAAAAPASSEPPHPSSEVEHAAVETKQQDEEPE
QKGEGGAAPKGEEDWCSPYPEEDYFVDENEPEEPTTCSLCIMMKNGPCPM
TFRRWARCTEVAKERGEDDKVACRCANIFMDLYRCMNENPNYFMIEKDGQ
GNDTAEDAHAAESASDSPTEADAAAVAAAGVATA*

mRNA from alignment at Contig_69:666121..669443+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12956 ID=mRNA_12956|Name=jgi.p|Trimin1|350709|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3323bp|location=Sequence derived from alignment at Contig_69:666121..669443+ (Tribonema minus UTEX_B_3156 )
CTGACCACAATCAGGAGCCCACGACACACGGATTGCTATTGCGTAGAGGT
AGCAGCGGTGTGAATGATGGTCCTGGTATTGCCTCGATGCTGCAGGCACG
GGCTGCGAGCTTCGCATTGCTATCTGTACTGCACGCCTCAGCTGCGGCAG
CACCAGCATCATCAGAACCGCCACACCCCAGCAGCGAAGTCGAACACGCC
GCAGTAGAAACCAAGCAGCAGGACGAGGAGCCGGAGCAGAAAGGCGAAGG
CGGTGCAGCGCCGAAGGGAGAGGAGGACTGGTGCAGTCCGTACCCGGAGG
AGGACTATTTTGTGGATGAAAACGAGCCAGAGGAGCCCACCACGTGCAGC
CTGTGCATCATGATGAAGAATGGACCCTGCCCCATGACATTCAGGCGTTG
GGCCAGGTGAGATCTTCAATAAGCTACAAACTCGTGCTATTTGCCACCTG
TCCTGTAGAGATTTTGTCTTCAGCTGAACACAATTTCTCTGCCGACAGCA
ACCGTGTGACGTCCGAGTGTTGAACCTTGCTCATCACATGCGCTGAGCTG
GATAAGATTGTCGTAATTTGCAGTGTGTCAGCTAACTACTGTGATTGTAC
GTCTTGCAGCTAAGCTTGCGCCATGTCCACCAGCCAGAATGTAGACCTGG
CAGGATGGTGCGGCTAAGGCTTTGCCTCACTATGTTGCCTTGTTGACAAC
TACATTCATGCCTGTGCCTGGGTTACAAAGTAGTGCTACTTGAATTTTCA
TAGAATGAAGGCATGCTCCCAACATATGTTGTGTTGCACAAGGTAGGATC
AGTATCATTATTATGCGGTGTCGGCTGCACTTCGGTGTGAATACTGTGCA
GTCACAAATTTGGTTTGGAAGTATCACGTTGCCCACCCATCCAGGCATTG
ACATTGACAATTGTATGCATCAGCAGTGCAGGATGCAAATGTGTCAGGTC
GGAACCCCAAAAGCTCATGTGCCAGTATTGCCGTCAGGCTTACACACGTC
ACCGAACACGAACACTAACGTCAGTTCTAAGGTCATGCAACTGCGGCAGC
CAATTTCCCACATGATGCGTCACTGAGCTTGCCAGTCCTGGCAAATGCAT
TGGCTGCTGAACCGCTCTATTCATAGCTATAATGGAATGGCTGCAACAAC
CACTTCCTGCTGTATACCCAGTGTTCAAGGAGTGCTGCAAAGAAGTGCTG
CAAGGAGCGGCTTTAGATGACGATCACTGACCAGCGTTTCTTACCACCCT
GCTCAGCACCTCGGTCCTCTTGCTATCCATACTTGATGACGATTATGATC
ATCATCACACGAGCTGCTGTGACCTGGAGTCGTACTCATGACTGTGACTC
GTTACTGCCCCCAGGAAAGATGAATTGGATGCCATCGTGGCCCAAGCTGC
CATGACTTGGGACTCGTACTCATGACTGCGACTCGTAGCTGCCCCATGAA
TGGCTGCAGGTGCACAGAGGTGGCTGTCATTCACTCAAGAGTTGTACTCA
TGATTAAGACTCACTGCTGCCCCTTGAATGGCCACAGGTGCACAGAGGTC
GCGAAGAAGCGTGGCGAAGGCGATAAGGTGGCGTGCCGCTGCTCCAACAG
TCATGGTGGTCATGACTTAGACTCGTACTCATGATTGCGACTCGTTGCCG
CCCCATGAATGGCTGCAGGTGCACGGAAGTTGCGAAGGAGCGCGGCGAAG
ACGACAAGGTGGCATGTCGCTGCGCGAACATATTCATGGACCTCTACCGC
TGCATGAATGAGAACCCCAACTACTTCATGATTGAGAAGGATGGACAGGG
CAACGACACAGCTGAAGACGGTGAGTAGCAGGGTATGCATGTATGTAAGC
TTGATATGTATGTCATACAAGTGCATATCATGAACGAGAACCCAGACGTC
TTCATGATTGAGAAGGATGGACAGGGCAACGACACAGCTGAAGACGGTGA
TGTACGCATGTATAGCTTGGTACATGTATGTCTGTCATAGCTATTGATGA
GCGAAAGGTCATTCAGTGTCCCGGTTTTGCTGATTTCGGTGAGCACACGA
GCTCTGAATCCTGAAGATCTATGTCTAGACTACCTACATCAAAGCAGTTG
TTGCCTTGGCGATGAGGCACACAACGTGTTGTAATTGAAGTTCATGATTG
TGCTACACAGAAGTATATTCAATGAAGAAGTTTGGGTGACGCAGGTGTGC
TGCATGCCTTGCGTGCTTGAGGTAAGGGTAAGGGTTAGGGTTAGGTGACA
TGGTTGTGTATGTACTCTCACACTGCAGGTACGTGCATCAAGTAGCCACT
TCTGTGTGCTTGTCTCCGCAACGTTCAGCTCTGCTGTGAACACACTCCCA
CGATCATGGCTCAGCCCAGCTATAGAGCTATGCACCTGACACTCACATGT
CACGGATGCTACTGCGCTATGATGATAATTGCAAAAGGTCATGCGAAGCG
CTGTGATGCCTGTCAAGTGTCACCAGCATGTGTGTGGCAAAGTGCAAAGT
GCCATCCGGGTAATCAGTAGCATATGACCGTAAGCTGAATTCATTGGACT
TGCCGAGTCAGAGTCGTTTCTTTTCAAGAGTCGCACGGTTGTCATCAACG
CTCACCCCGCTCCCGCTGTGTCAGCAAGCACAGCTGTATTGTACAGCCAT
GGAGTTGTGCGTGGGCACAAGGCATGTGCACACACAACACCTGCGCCTGT
CTGCAGCAGACAGGTCGTTGTGACCTTGCAGCAAAAGCTGGCAGCTGTTG
TGTTTTAAGTAGGTAACCACCCTCATTGATGGGTGCTGCAGATTGTACAG
TGGTATGACATGTGTTGCTGTGATGGCCATGTGCACCGCTATGATTGTGC
TGTCAGCCTACTTGATGGTGGCATTTTGACTGCATGCTTACACCCATGCT
TCCAACAACACACGTGTCTCTTGCAGGTACACAAGCAGGTGCTGCAGCGC
ACGCCGCTGAATCCGCCAGCGACTCTCCTACAGAAGCCGACGCAGCAGCA
GTGGCAGCTGCTGGAGTGGCCACTGCATAGAGCCAGGGTAACCATGATGA
CCCTGGCTTTACACTCAGTCCTGGGCCTTGCAGCTCCGGGGCTGGCACCA
GGGTTACCTCAACCCTAATCCTAACCCTAACCCCAGAGCTGCAAAAGCTA
GCCGGGGGGTGGGAGTACTTACCGCAGCTGGAACACATTGTGGAGAAAGA
TGGGGGGGTATGCAGCGATAGCTGCATTGGCAGCGTGCTGGCACATAGAG
CAGGCACTTCTTCAAGTGTCACGTGGCTCAAGGAATCACACAAAGGATGG
AATCACATGCACATGGTTACCAA

Coding sequence (CDS) from alignment at Contig_69:666121..669443+

>mRNA_12956 ID=mRNA_12956|Name=jgi.p|Trimin1|350709|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=555bp|location=Sequence derived from alignment at Contig_69:666121..669443+ (Tribonema minus UTEX_B_3156 )
ATGCTGCAGGCACGGGCTGCGAGCTTCGCATTGCTATCTGTACTGCACGC
CTCAGCTGCGGCAGCACCAGCATCATCAGAACCGCCACACCCCAGCAGCG
AAGTCGAACACGCCGCAGTAGAAACCAAGCAGCAGGACGAGGAGCCGGAG
CAGAAAGGCGAAGGCGGTGCAGCGCCGAAGGGAGAGGAGGACTGGTGCAG
TCCGTACCCGGAGGAGGACTATTTTGTGGATGAAAACGAGCCAGAGGAGC
CCACCACGTGCAGCCTGTGCATCATGATGAAGAATGGACCCTGCCCCATG
ACATTCAGGCGTTGGGCCAGGTGCACGGAAGTTGCGAAGGAGCGCGGCGA
AGACGACAAGGTGGCATGTCGCTGCGCGAACATATTCATGGACCTCTACC
GCTGCATGAATGAGAACCCCAACTACTTCATGATTGAGAAGGATGGACAG
GGCAACGACACAGCTGAAGACGCGCACGCCGCTGAATCCGCCAGCGACTC
TCCTACAGAAGCCGACGCAGCAGCAGTGGCAGCTGCTGGAGTGGCCACTG
CATAG