mRNA_12908 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350688
Unique NamemRNA_12908
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350688 vs. uniprot
Match: A0A835YN49_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN49_9STRA)

HSP 1 Score: 517 bits (1332), Expect = 4.760e-182
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 1 
Query:    1 MAHDIGAAEAAAPPPLKNPRLGEAEEPASMFTIGKDVTARIFGFLGARRFLFMGLTCKSARSIYVETFSAPDVSKATSLRLRDLCGFPVERRLAQQKALVKWAWESGLPKNGGLLVQAAADGDISLAEFLRSGKTRRTREPWTMQASEAAASAGHLAFLQWARDENGGGMEKWGRRVILXXXXXXXXXXXXXXHSQGCMAAGTDPVAAAIKGGHADVVDWFLAHDAKPTATFALLQWAVTTGCPTIAHTCAAAADCGQLGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP 1086
            MAHDIGAAEAAAPPPLKNPRLGEAEEPASMFTIGKDVTARIFGFLGARRFLFMGLTCKSARSIYVETFSAPDVSKATSLRLRDLCGFPVERRLAQQKALVKWAWESGLPKNGGLLVQAAADGDISLAEFLRSGKTRRTREPWTMQASEAAASAGHLAFLQWARDENGGGMEKWGRRVILXXXXXXXXXXXXXXHSQGCMAAGTDPVAAAIKGGHADVVDWFLAHDAKPTATFALLQWAVTTGCPTIAHTCAAAADCGQLGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP
Sbjct:    1 MAHDIGAAEAAAPPPLKNPRLGEAEEPASMFTIGKDVTARIFGFLGARRFLFMGLTCKSARSIYVETFSAPDVSKATSLRLRDLCGFPVERRLAQQKALVKWAWESGLPKNGGLLVQAAADGDISLAEFLRSGKTRRTREPWTMQASEAAASAGHLAFLQWARDENGGGMEKWGRRVILXXXXXXXXXXXXXXHSQGCMAAGTDPVAAAIKGGHADVVDWFLAHDAKPTATFALLQWAVTTGCPTIAHTCAAAADCGQLGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP 362
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BLAST of jgi.p|Trimin1|350688 vs. uniprot
Match: A0A836C8R1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8R1_9STRA)

HSP 1 Score: 208 bits (529), Expect = 1.470e-60
Identity = 244/402 (60.70%), Postives = 261/402 (64.93%), Query Frame = 1 
Query:    1 MAHDIGAAEAAAPPPLKNPRLGEAEEPASMFTIGKDVTARIFGFLGARRFLFMGLTCKSARSIYVETFSAPDVSKATSLRLRDLCGFPVERRLAQQKALVKWAWESGLPKNGGLLVQAAADGDISLAEFLRSGKTRRTREPWTMQASEAAASAGHLAFLQWARDENGGGMEKWGRRVILXXXXXXXXXXXXXXHSQGCMAAGTD--------------------------------------PVAAAIKGGHADVVDWFLAHD--AKPTATFALLQWAVTTGCPTIAHTCAAAADCGQLGMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP 1086
            MA D+GAA AA   PLK PRLG+A++PASM TIG  VT RIFGFLGA++FLFM LTCKS ++ Y ETFSAP                        QK  VKWAW+SGLPKNG LL Q AADGDISLAEFL SG+TRRTREPW MQASEAAA+ GHLAFLQWARD+   GMEK       XXXXXXXXXXXXXX                                                 P+   ++   A    W  +    A  +  FALLQWAVTTGCPT                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP
Sbjct:    1 MAQDMGAAAAA---PLKAPRLGDADQPASMSTIG--VTVRIFGFLGAKKFLFMALTCKSTKATYDETFSAP-----------------------AQKVFVKWAWDSGLPKNGRLLAQTAADGDISLAEFLCSGETRRTREPWAMQASEAAATHGHLAFLQWARDD---GMEKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLPLLQRLR--KAVYAPWNPSTTVAAVHSGNFALLQWAVTTGCPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAKAHAIVEFIDSVPAGEGEGEESAP 369
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350688 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YN49_9STRA4.760e-182100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C8R1_9STRA1.470e-6060.70Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_69contigContig_69:125771..127241 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350688|estExt_Genemark1.C_Ctg_690011
Hectar predicted targeting categoryother localisation
TranscriptId351010
TrackFilteredModels1
ProteinId350688
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350688gene_12908Tribonema minus UTEX_B_3156 geneContig_69 125771..127241 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350688Trimin1|350688|estExt_Genemark1.C_Ctg_690011Tribonema minus UTEX_B_3156 polypeptideContig_69 125771..127241 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12908_3exon_12908_3Tribonema minus UTEX_B_3156 exonContig_69 125771..126174 -
exon_12908_2exon_12908_2Tribonema minus UTEX_B_3156 exonContig_69 126290..126874 -
exon_12908_1exon_12908_1Tribonema minus UTEX_B_3156 exonContig_69 127142..127241 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12908CDS_12908Tribonema minus UTEX_B_3156 CDSContig_69 127142..127241 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12908 ID=mRNA_12908|Name=jgi.p|Trimin1|350688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1089bp|location=Sequence derived from alignment at Contig_69:125771..127241- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCACGATATTGGGGCAGCAGAAGCAGCAGCACCTCCACCTCTCAA
GAACCCGCGCCTCGGGGAGGCCGAGGAGCCAGCGAGCATGTTCACCATCG
GTAAGGACGTGACGGCGCGGATCTTTGGCTTCCTCGGTGCCAGGCGCTTT
CTTTTCATGGGGCTCACGTGCAAGAGTGCAAGGTCCATCTACGTTGAGAC
GTTCAGCGCACCCGATGTCAGCAAGGCGACATCGCTGCGCCTCAGGGACC
TATGCGGTTTTCCAGTGGAACGTCGCCTGGCGCAGCAGAAGGCGCTCGTC
AAGTGGGCCTGGGAGAGTGGACTGCCCAAAAATGGAGGTCTGCTTGTGCA
AGCAGCTGCAGATGGCGACATCAGCCTGGCCGAGTTCCTTCGTAGCGGGA
AGACGAGAAGGACTCGAGAGCCCTGGACCATGCAGGCCAGCGAAGCTGCG
GCGAGCGCCGGCCATCTGGCATTCCTGCAGTGGGCCCGTGACGAAAACGG
TGGCGGAATGGAGAAGTGGGGGCGGAGGGTGATCCTCAACGCAGCAGCTC
AAGGGCACTTGGCGCTGATCGAGTGGGCCCACAGCCAAGGCTGCATGGCG
GCAGGCACTGATCCAGTCGCTGCCGCTATAAAGGGGGGGCATGCGGATGT
GGTGGACTGGTTCCTGGCCCATGACGCAAAGCCCACGGCAACTTTTGCGC
TTTTGCAATGGGCCGTCACTACCGGATGCCCCACAATTGCGCACACGTGC
GCTGCGGCCGCCGACTGCGGCCAACTGGGCATGCTGCAGTGGCTGCGCGC
GCAGGGGTGTGCCTGGGACGCAATCACATGCAGTGCCGCAGCGAAGGGCG
GGCACCTCAGTGTGCTGCAGTGGGCGCGCTCGCGCGGCTGCCCCTGGACC
GAGTACACGTGCTTCCAAGCAGCCAGGCACGGTCAGCTTGAGGTGCTGCG
GTGGGTGCGTGCGAACGGCGCGCCGTGGCGCCGCTCTGAGTGCAGGCGTG
CGGCGGCGGAGGCAAAGGCGCATGCTATAGTGGAGTTCATTGACAGCGTG
CCAGCAGGCGAGGGTGAGGGAGAGGAGAGTGCGCCGTGA
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protein sequence of jgi.p|Trimin1|350688

>Trimin1|350688|estExt_Genemark1.C_Ctg_690011 ID=Trimin1|350688|estExt_Genemark1.C_Ctg_690011|Name=jgi.p|Trimin1|350688|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=363bp
MAHDIGAAEAAAPPPLKNPRLGEAEEPASMFTIGKDVTARIFGFLGARRF
LFMGLTCKSARSIYVETFSAPDVSKATSLRLRDLCGFPVERRLAQQKALV
KWAWESGLPKNGGLLVQAAADGDISLAEFLRSGKTRRTREPWTMQASEAA
ASAGHLAFLQWARDENGGGMEKWGRRVILNAAAQGHLALIEWAHSQGCMA
AGTDPVAAAIKGGHADVVDWFLAHDAKPTATFALLQWAVTTGCPTIAHTC
AAAADCGQLGMLQWLRAQGCAWDAITCSAAAKGGHLSVLQWARSRGCPWT
EYTCFQAARHGQLEVLRWVRANGAPWRRSECRRAAAEAKAHAIVEFIDSV
PAGEGEGEESAP*
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mRNA from alignment at Contig_69:125771..127241-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12908 ID=mRNA_12908|Name=jgi.p|Trimin1|350688|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1471bp|location=Sequence derived from alignment at Contig_69:125771..127241- (Tribonema minus UTEX_B_3156 )
ATGGCGCACGATATTGGGGCAGCAGAAGCAGCAGCACCTCCACCTCTCAA
GAACCCGCGCCTCGGGGAGGCCGAGGAGCCAGCGAGCATGTTCACCATCG
GTGAGTGTTGCCTTCGGCTTCCTGTGATGCCTACTGCGCACCTTTACTGC
ATGTGAGGGACCGCTTGTCATCCTTCCTAGTGATGCCTCCTGCGCACCTT
TACCGCATGTGAGGGACCGCTTGTCATCCAGCAGAAGCTGCACGAACCAG
CGAGTTTGCAGATGAAATTTGCTGACCGATCAACCAACAGCAGAAGCTGC
ACGAAGCAGCGAGTTCGCAGATCAAATTGTCTGACAGTCCTCCCCTCTTT
GATGGCGATCTTCACAGGTAAGGACGTGACGGCGCGGATCTTTGGCTTCC
TCGGTGCCAGGCGCTTTCTTTTCATGGGGCTCACGTGCAAGAGTGCAAGG
TCCATCTACGTTGAGACGTTCAGCGCACCCGATGTCAGCAAGGCGACATC
GCTGCGCCTCAGGGACCTATGCGGTTTTCCAGTGGAACGTCGCCTGGCGC
AGCAGAAGGCGCTCGTCAAGTGGGCCTGGGAGAGTGGACTGCCCAAAAAT
GGAGGTCTGCTTGTGCAAGCAGCTGCAGATGGCGACATCAGCCTGGCCGA
GTTCCTTCGTAGCGGGAAGACGAGAAGGACTCGAGAGCCCTGGACCATGC
AGGCCAGCGAAGCTGCGGCGAGCGCCGGCCATCTGGCATTCCTGCAGTGG
GCCCGTGACGAAAACGGTGGCGGAATGGAGAAGTGGGGGCGGAGGGTGAT
CCTCAACGCAGCAGCTCAAGGGCACTTGGCGCTGATCGAGTGGGCCCACA
GCCAAGGCTGCATGGCGGCAGGCACTGATCCAGTCGCTGCCGCTATAAAG
GGGGGGCATGCGGATGTGGTGGACTGGTTCCTGGCCCATGACGCAAAGCC
CAGTCCTGCTTCGTGCACAGCAGCCGCAAGGAAGGGTGATTTGCCGCTGC
TGCAGCGGCTGCGCAAAGCGGTTTATGCACCATGGAATCCTAGCACCACA
GTCGCCGCCGTCCACAGCGGCAACTTTTGCGCTTTTGCAATGGGCCGTCA
CTACCGGATGCCCCACAATTGCGCACACGTGCGCTGCGGCCGCCGACTGC
GGCCAACTGGGCATGCTGCAGTGGCTGCGCGCGCAGGGGTGTGCCTGGGA
CGCAATCACATGCAGTGCCGCAGCGAAGGGCGGGCACCTCAGTGTGCTGC
AGTGGGCGCGCTCGCGCGGCTGCCCCTGGACCGAGTACACGTGCTTCCAA
GCAGCCAGGCACGGTCAGCTTGAGGTGCTGCGGTGGGTGCGTGCGAACGG
CGCGCCGTGGCGCCGCTCTGAGTGCAGGCGTGCGGCGGCGGAGGCAAAGG
CGCATGCTATAGTGGAGTTCATTGACAGCGTGCCAGCAGGCGAGGGTGAG
GGAGAGGAGAGTGCGCCGTGA
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Coding sequence (CDS) from alignment at Contig_69:125771..127241-

>mRNA_12908 ID=mRNA_12908|Name=jgi.p|Trimin1|350688|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1089bp|location=Sequence derived from alignment at Contig_69:125771..127241- (Tribonema minus UTEX_B_3156 )
ATGGCGCACGATATTGGGGCAGCAGAAGCAGCAGCACCTCCACCTCTCAA
GAACCCGCGCCTCGGGGAGGCCGAGGAGCCAGCGAGCATGTTCACCATCG
GTAAGGACGTGACGGCGCGGATCTTTGGCTTCCTCGGTGCCAGGCGCTTT
CTTTTCATGGGGCTCACGTGCAAGAGTGCAAGGTCCATCTACGTTGAGAC
GTTCAGCGCACCCGATGTCAGCAAGGCGACATCGCTGCGCCTCAGGGACC
TATGCGGTTTTCCAGTGGAACGTCGCCTGGCGCAGCAGAAGGCGCTCGTC
AAGTGGGCCTGGGAGAGTGGACTGCCCAAAAATGGAGGTCTGCTTGTGCA
AGCAGCTGCAGATGGCGACATCAGCCTGGCCGAGTTCCTTCGTAGCGGGA
AGACGAGAAGGACTCGAGAGCCCTGGACCATGCAGGCCAGCGAAGCTGCG
GCGAGCGCCGGCCATCTGGCATTCCTGCAGTGGGCCCGTGACGAAAACGG
TGGCGGAATGGAGAAGTGGGGGCGGAGGGTGATCCTCAACGCAGCAGCTC
AAGGGCACTTGGCGCTGATCGAGTGGGCCCACAGCCAAGGCTGCATGGCG
GCAGGCACTGATCCAGTCGCTGCCGCTATAAAGGGGGGGCATGCGGATGT
GGTGGACTGGTTCCTGGCCCATGACGCAAAGCCCACGGCAACTTTTGCGC
TTTTGCAATGGGCCGTCACTACCGGATGCCCCACAATTGCGCACACGTGC
GCTGCGGCCGCCGACTGCGGCCAACTGGGCATGCTGCAGTGGCTGCGCGC
GCAGGGGTGTGCCTGGGACGCAATCACATGCAGTGCCGCAGCGAAGGGCG
GGCACCTCAGTGTGCTGCAGTGGGCGCGCTCGCGCGGCTGCCCCTGGACC
GAGTACACGTGCTTCCAAGCAGCCAGGCACGGTCAGCTTGAGGTGCTGCG
GTGGGTGCGTGCGAACGGCGCGCCGTGGCGCCGCTCTGAGTGCAGGCGTG
CGGCGGCGGAGGCAAAGGCGCATGCTATAGTGGAGTTCATTGACAGCGTG
CCAGCAGGCGAGGGTGAGGGAGAGGAGAGTGCGCCGTGA
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