mRNA_12953 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Match: A0A836C920_9STRA (Gamma-tocopherol methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C920_9STRA) HSP 1 Score: 672 bits (1734), Expect = 3.260e-244 Identity = 334/334 (100.00%), Postives = 334/334 (100.00%), Query Frame = 1 Query: 1 MQMGARTAVSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEEQPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKPDDREAEPEPVLSPLSSSRMPY 1002 MQMGARTAVSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEEQPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKPDDREAEPEPVLSPLSSSRMPY Sbjct: 1 MQMGARTAVSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEEQPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKPDDREAEPEPVLSPLSSSRMPY 334
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Match: A0A6H5LQU7_9PHAE (Methyltransf_11 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LQU7_9PHAE) HSP 1 Score: 420 bits (1080), Expect = 1.030e-143 Identity = 202/313 (64.54%), Postives = 250/313 (79.87%), Query Frame = 1 Query: 7 MGARTAVSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEE--QPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKP 939 MG R+A + + + G+ + RS ELK+GIANFYDKSSG+WE +WGEHMHHGYY + +P+++E H+AAQ MI +SLEWAGV + + PKTGVD+GCG+GGSSR I+R++GT M GI+LSP Q RA L+ AGL DKC FQVADAL PF+ +SFDL+WSMESGEHMP K +FVGELAR+CAPGGRVL+VTWCHRDLEEGE L PKE++LLA INKAYYLP+WCS +DYV Y ++ GL D++R DWTD IQ FWPAVI+SS+S +GI GL+++GP IRGA+AMLLMVRG+K LVKF LIT +KP Sbjct: 84 MGLRSAAENTWKRARGGGKGKTRSDGELKEGIANFYDKSSGIWEEMWGEHMHHGYYVQGVKPKNMEHHRAAQRFMIGRSLEWAGV-EEGGAAPKTGVDIGCGVGGSSRAISRRYGTNMTGISLSPVQVERAKNLSEAAGLGDKCKFQVADALNTPFDTDSFDLVWSMESGEHMPYKPKFVGELARICAPGGRVLVVTWCHRDLEEGETELTPKEEKLLAKINKAYYLPRWCSTSDYVKYFEDEGLVDIKRADWTDNIQNFWPAVIRSSVSFQGIVGLLKSGPVTIRGAVAMLLMVRGYKRGLVKFALITGKKP 395
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Match: A0A6S9IJ58_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9IJ58_HETAK) HSP 1 Score: 389 bits (999), Expect = 5.540e-132 Identity = 199/327 (60.86%), Postives = 249/327 (76.15%), Query Frame = 1 Query: 1 MQMGARTAVSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEEQPQSLE-EHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSL-SGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKP----DDREAEPE 963 ++MG R+ ++ KV G + ER+ ELKDGIA FYD SSG+WE +WGEHMHHGYY P+ ++ +HK AQ+ MI++SL+WAGV V A + VDVGCGIGGSSRHIAR++G + GITLSP Q ARA L+ GL D+C FQVADAL PFE+NSFDLIWSMESGEHMP K++FV LARVCAPGG+VL+VTWCHRDLE GE L PKE+RLL INKAYYLP+WCSVADYV Y + AGL D++ DWTD+IQ FWPAV++S+L S R G++R+GP +RGALAML M++G+ L+KFGLITA KP D+++ +P+ Sbjct: 39 LKMGVRSTLAKPFKKV--FGSS-ERTDKELKDGIAGFYDASSGVWEDVWGEHMHHGYY---PEGVKVDHKEAQIDMINRSLDWAGV-VKADNV----VDVGCGIGGSSRHIARRYGGRTTGITLSPVQAARATALSEAQGLGDRCRFQVADALNMPFEENSFDLIWSMESGEHMPEKEKFVQGLARVCAPGGKVLVVTWCHRDLEPGEAGLTPKEERLLNRINKAYYLPRWCSVADYVAYAEAAGLADIKTADWTDRIQAFWPAVVRSALGSPRNFWGMLRSGPKTVRGALAMLWMIQGYNRGLIKFGLITATKPASAADEQKEDPK 354
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Match: A0A7S4J028_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J028_9STRA) HSP 1 Score: 379 bits (972), Expect = 6.690e-128 Identity = 190/315 (60.32%), Postives = 235/315 (74.60%), Query Frame = 1 Query: 1 MQMGARTAVSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEEQPQSLEEHKAAQVAMIDKSLEWAGVGVDAA-STPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKPD 942 +QMG V SA +V+ ++ER+R +LK GIA FYD+SS LWE IWGEHMHHGYY P+ +H AQ+ MID+SL+WAGV + TP VDVGCGIGGSSRHIARK+G +GITLSP Q R NELA+E GLAD+C F+VADAL+ PF D FDL+WS ESGEHMP K +FV EL RV APGGR+++VTWCHRDLEEGEESL KE++LLA IN+AYYLP+WCSV DYV +E G ++RDDW+ I FW AVIKSSLS + + GL+++G IRGA AM LM++GF + L+KFG+IT +KP+ Sbjct: 47 LQMG----VGSAARRVRDSVLSKERNREDLKIGIAGFYDRSSKLWEDIWGEHMHHGYYV--PEDRTDHIQAQIDMIDESLKWAGVPNEGEPGTPSKVVDVGCGIGGSSRHIARKYGASTKGITLSPYQAQRGNELASEQGLADQCEFRVADALDMPFHDEEFDLVWSFESGEHMPDKTKFVDELCRVVAPGGRIILVTWCHRDLEEGEESLTKKEEKLLAKINRAYYLPRWCSVDDYVKLLEERGAVGIKRDDWSYTIAPFWKAVIKSSLSLKSVVGLMKSGFSTIRGAYAMFLMLKGFNMGLIKFGMITCQKPE 355
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Match: A0A7S1B3A8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B3A8_9STRA) HSP 1 Score: 379 bits (972), Expect = 1.040e-127 Identity = 190/313 (60.70%), Postives = 238/313 (76.04%), Query Frame = 1 Query: 28 SSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEEQPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGT-KMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKPDDREAEPE 963 S+ +++V R++ERSR ELK GIA FYD+SS LWE +WGEHMHHGYY P++ +H AQ+ +ID+ L W+G+ S P + VDVGCG+GGSSRHIARK+G + +GITLSP Q AR NELA E GLAD C+++VADALE PF+D++FDL+WS+ESGEHMP K +FVGEL RV APGGR++IVTWCHRDLEEGE+ L KE++LLA IN+AYYLP WCSVADYVT +E G D+RRDDW+ I FW AVIKSSL+ + + GL ++G RGA AM LM+RGF L+KFGLIT KP+ E+ PE Sbjct: 61 SATLSRVVDSIRSKERSREELKVGIAGFYDRSSKLWEEVWGEHMHHGYYV--PENRTDHVQAQIDLIDEVLAWSGID----SPPSSVVDVGCGVGGSSRHIARKYGCERAEGITLSPYQAARGNELAVETGLADACTYRVADALEMPFDDDAFDLVWSLESGEHMPEKTKFVGELLRVAAPGGRIIIVTWCHRDLEEGEKDLTKKEKKLLAKINRAYYLPPWCSVADYVTMLEERGAKDIRRDDWSHIIAPFWKAVIKSSLNFKSVVGLAKSGFSTQRGAYAMFLMLRGFNKGLIKFGLITCTKPE-LESSPE 366
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Match: A0A448ZB61_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZB61_9STRA) HSP 1 Score: 374 bits (960), Expect = 3.610e-126 Identity = 194/310 (62.58%), Postives = 231/310 (74.52%), Query Frame = 1 Query: 10 GARTAVSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEEQPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKP 939 G + S V +V+ ++ER+R +LK GIA FYD+SS LWE +WGEHMHHGYY P+ +H AQ+ +ID+ L+WA V +A S VDVGCGIGGSSRHIARK+ K QGITLSP Q AR NELA E GLADK SFQVADAL+QPFEDN+FDL WS+ESGEHMP K++FV EL RV PGGR+LIVTWCHRDLEEGE SL KE+R+LA IN+AYYLPKWCSV DYV + G TDV+R+DW+ I FW AVIKSSL+ + I GL ++G IRGA AM LM+RGF L ++KFGLIT KP Sbjct: 46 GLNMGLRSGVRRVRDSILSKERTRKDLKIGIAGFYDRSSKLWEDVWGEHMHHGYYI--PEDRTDHVQAQIDLIDEVLKWADV-TEATSV----VDVGCGIGGSSRHIARKFDCKAQGITLSPYQAARGNELAIEQGLADKASFQVADALDQPFEDNTFDLAWSLESGEHMPDKKKFVDELFRVVVPGGRILIVTWCHRDLEEGETSLTKKEERILARINRAYYLPKWCSVQDYVDLLEAKGATDVKREDWSYIIAPFWKAVIKSSLNLKSIVGLAKSGFSTIRGAYAMFLMLRGFNLGVIKFGLITCTKP 348
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Match: A0A7S0L5W0_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5W0_9EUKA) HSP 1 Score: 374 bits (960), Expect = 1.140e-125 Identity = 190/306 (62.09%), Postives = 229/306 (74.84%), Query Frame = 1 Query: 73 RSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEEQPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGV-DVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKPDDREAEPEPVL-SPLS 984 R+ EL+ GIA FYD SSG+WE +WGEHMHHG+Y++ S ++H AQV MIDK LEW+G A P T V DVGCGIGGSSRHIARK+G+ GITLSP Q ARA +L+ + GL + SFQVADAL PF DNSFDLIWSMESGEHMP KQQFV ELARVC PGGRV++V WCHRDLE GE++L +E+RLL IN+AY+LP+WCSVADY+ Y E GL++++RDDWTDK++ FWPAVI S+L R GL+R+G IRGAL M LM+RG + LVKFGL T RK + P PV +PLS Sbjct: 53 RTVEELRAGIAGFYDSSSGVWEKVWGEHMHHGFYDD---SRKDHVQAQVDMIDKVLEWSG----ADDAPPTSVLDVGCGIGGSSRHIARKYGSSGIGITLSPVQAARAQQLSNDQGLGEALSFQVADALRMPFADNSFDLIWSMESGEHMPDKQQFVSELARVCKPGGRVIVVAWCHRDLEPGEQALAMREERLLRTINRAYFLPRWCSVADYMRYASEQGLSEIKRDDWTDKVKRFWPAVILSALRPRAFVGLLRSGTKTIRGALVMPLMIRGQRRGLVKFGLWTGRKTSSPSSLPSPVPPTPLS 351
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Match: A0A7S3Q3Q8_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3Q8_9STRA) HSP 1 Score: 372 bits (955), Expect = 3.560e-125 Identity = 189/312 (60.58%), Postives = 228/312 (73.08%), Query Frame = 1 Query: 25 VSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEEQPQSLEEHKAAQVAMIDKSLEWAGV------GVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKPD 942 V S V +V+ +ERSR +LK GIA FYD+SS LWE +WGEHMHHGYY P +H AQ+ +ID+ L+W+GV G +A+ PK VDVGCGIGGSSRHIARK+G GITLSP Q R NELA E G+AD C+FQVADAL+QPFED SFDLIWS+ESGEHMP K++FV EL RV PGGR++IVTWCHRDLE GE SL KE++LLA IN+AYYLP+WCSV DYV + G D+RR+DW+ I FW AVIKSSL+ + + GL ++G RGA AMLLM+RGF L+KFGLIT KP+ Sbjct: 47 VRSTVARVRDSIMAKERSREDLKIGIAGFYDRSSQLWEDVWGEHMHHGYYV--PNDRTDHVQAQIDLIDEVLKWSGVPEPAADGSNASILPKKCVDVGCGIGGSSRHIARKYGCTSNGITLSPYQAGRGNELAIEQGVADLCNFQVADALDQPFEDESFDLIWSLESGEHMPDKEKFVNELFRVATPGGRIIIVTWCHRDLEVGESSLNSKEEKLLAKINRAYYLPRWCSVDDYVNLLKSQGAVDIRREDWSYIIAPFWKAVIKSSLNVKSVLGLAKSGFSTQRGAYAMLLMLRGFDKGLIKFGLITCSKPE 356
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Match: A0A7S4AWA4_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AWA4_9STRA) HSP 1 Score: 371 bits (953), Expect = 4.460e-125 Identity = 190/313 (60.70%), Postives = 235/313 (75.08%), Query Frame = 1 Query: 1 MQMGARTAVSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYEEQPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKP 939 + MG R S V +V+ ++ER+R +LK GIA FYD+SS LWE +WGEHMHHGYY P+ +H AQ+ +ID+ L+WA V + + VDVGCGIGGSSRHIARK+ K +GITLSP Q AR NELA E G+AD+ SFQVADAL+QPFEDNSFDL+WS+ESGEHMP K++FV EL RV PGGR+LIVTWCHRDLE+GE SL KE+R+LA IN+AYYLPKWCSV DYV + G ++VRR+DW+ I FW AVIKSSL+ + + GL+++G IRGA AMLLM+RGF L ++KFGLIT KP Sbjct: 49 LNMGLR----SGVRRVRDSILSKERTRKDLKIGIAGFYDRSSKLWEDVWGEHMHHGYYI--PEDRTDHVQAQIDLIDEVLKWADV-----TKATSAVDVGCGIGGSSRHIARKFNCKARGITLSPYQAARGNELAIEQGVADRTSFQVADALDQPFEDNSFDLVWSLESGEHMPDKKKFVDELFRVATPGGRILIVTWCHRDLEDGETSLTKKEERILARINRAYYLPKWCSVKDYVDLLEAKGASNVRREDWSYIIAPFWKAVIKSSLNLKSVVGLMKSGFSTIRGAYAMLLMLRGFNLGVIKFGLITCTKP 350
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Match: UPI000B78AA95 (probable tocopherol O-methyltransferase, chloroplastic n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B78AA95) HSP 1 Score: 364 bits (934), Expect = 5.080e-122 Identity = 178/291 (61.17%), Postives = 219/291 (75.26%), Query Frame = 1 Query: 73 RSRAELKDGIANFYDKSSGLWESIWGEHMHHGYYE-EQPQSLEEHKAAQVAMIDKSLEWAGVGVDAASTPKTGVDVGCGIGGSSRHIARKWGTKMQGITLSPKQCARANELAAEAGLADKCSFQVADALEQPFEDNSFDLIWSMESGEHMPLKQQFVGELARVCAPGGRVLIVTWCHRDLEEGEESLKPKEQRLLAAINKAYYLPKWCSVADYVTYCQEAGLTDVRRDDWTDKIQYFWPAVIKSSLSGRGIRGLVRAGPGIIRGALAMLLMVRGFKLNLVKFGLITARKPD 942 +SR EL GIA+ YD+SS +WE IWG+HMHHGYY+ QP SL +H+AAQ+ MI+++L +AGV D + PK VDVGCGIGGSSR++A+K+G QGITLSPKQ RA LA GLADK SFQVADALEQPFED FDL+WSMESGEHMP K++FV ELARV APG ++IVTWCHRDL EE+LKP E LL I AYYLP WCS ADYV Q L D++ +DW+ + FWPAVI+S+L+ +GI L+R+G I+GALAM LMV G+K +L+KF +IT RKP+ Sbjct: 74 KSREELNKGIADLYDESSAMWEDIWGDHMHHGYYDPSQPASLSQHRAAQIRMIEEALRFAGVTDDPSKQPKAIVDVGCGIGGSSRYLAKKFGATTQGITLSPKQAERAQALAVSEGLADKASFQVADALEQPFEDGKFDLVWSMESGEHMPDKKKFVTELARVAAPGATIIIVTWCHRDLSASEEALKPDETELLRKICDAYYLPAWCSAADYVELLQSLSLQDIKAEDWSQYVAPFWPAVIRSALTWKGITSLLRSGWKTIKGALAMPLMVEGYKKDLIKFAIITCRKPE 364 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170089 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12953 ID=mRNA_12953|Name=jgi.p|Trimin1|170089|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1005bp|location=Sequence derived from alignment at Contig_69:601953..608781- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCAGATGGGCGCCCGGACTGCTGTGTCCAGTGCGGTGACGAAGGTACAback to top protein sequence of jgi.p|Trimin1|170089 >Trimin1|170089|e_gw1.69.108.1 ID=Trimin1|170089|e_gw1.69.108.1|Name=jgi.p|Trimin1|170089|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=335bp MQMGARTAVSSAVTKVQLLGRNRERSRAELKDGIANFYDKSSGLWESIWGback to top mRNA from alignment at Contig_69:601953..608781- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12953 ID=mRNA_12953|Name=jgi.p|Trimin1|170089|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6829bp|location=Sequence derived from alignment at Contig_69:601953..608781- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_69:601953..608781- >mRNA_12953 ID=mRNA_12953|Name=jgi.p|Trimin1|170089|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1005bp|location=Sequence derived from alignment at Contig_69:601953..608781- (Tribonema minus UTEX_B_3156 )back to top |