mRNA_8487 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|350644
Unique Name	mRNA_8487
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|350644 vs. uniprot
Match: A0A835YLP2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP2_9STRA)

HSP 1 Score: 503 bits (1296), Expect = 2.260e-178
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 1

Query:    1 MEVTAGQVAGDGGAELHAHGLAAIIAAALVTLCXXXXXXXXXXXXXLRPPPERCASPYGSSAVCFSSPPARRAMPARDATLRHREPFEHDASGGSYDPCEYAASDGGDSYASSPPRSSSRRSAGAAATPGSKGSRNRLSVFFPRHRLSCLAMDMVEGASAHAQQPMPXXXXXXXXPWPGSCGSSGGSRRRSTRKSMRRSIVAPGLGTASPPFGADGSSXXXXXXXXXGEAADPLGRKWTMEAVHHEYPHEVELRFARKSQRNTPGSGXXXXXXXXXXXXXKETRKASHVSDLGTAQVWLSGVSVDGC 921
            MEVTAGQVAGDGGAELHAHGLAAIIAAALVTLCXXXXXXXXXXXXXLRPPPERCASPYGSSAVCFSSPPARRAMPARDATLRHREPFEHDASGGSYDPCEYAASDGGDSYASSPPRSSSRRSAGAAATPGSKGSRNRLSVFFPRHRLSCLAMDMVEGASAHAQQPMPXXXXXXXXPWPGSCGSSGGSRRRSTRKSMRRSIVAPGLGTASPPFGADGSSXXXXXXXXXGEAADPLGRKWTMEAVHHEYPHEVELRFARKSQRNTPGSGXXXXXXXXXXXXXKETRKASHVSDLGTAQVWLSGVSVDGC
Sbjct:    1 MEVTAGQVAGDGGAELHAHGLAAIIAAALVTLCXXXXXXXXXXXXXLRPPPERCASPYGSSAVCFSSPPARRAMPARDATLRHREPFEHDASGGSYDPCEYAASDGGDSYASSPPRSSSRRSAGAAATPGSKGSRNRLSVFFPRHRLSCLAMDMVEGASAHAQQPMPXXXXXXXXPWPGSCGSSGGSRRRSTRKSMRRSIVAPGLGTASPPFGADGSSXXXXXXXXXGEAADPLGRKWTMEAVHHEYPHEVELRFARKSQRNTPGSGXXXXXXXXXXXXXKETRKASHVSDLGTAQVWLSGVSVDGC 307

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350644 vs. uniprot

BLAST of jgi.p|Trimin1|350644 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YLP2_9STRA	2.260e-178	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_68	contig	Contig_68:333323..334991 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|350644\|estExt_Genemark1.C_Ctg_680048
Hectar predicted targeting category	signal peptide
TranscriptId	350966
Track	FilteredModels1
ProteinId	350644

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350644	gene_8487	Tribonema minus UTEX_B_3156	gene	Contig_68 333323..334991 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_8487_1	exon_8487_1	Tribonema minus UTEX_B_3156	exon	Contig_68 333323..333359 +
exon_8487_2	exon_8487_2	Tribonema minus UTEX_B_3156	exon	Contig_68 334105..334991 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_8487	CDS_8487	Tribonema minus UTEX_B_3156	CDS	Contig_68 333323..333359 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350644	Trimin1\|350644\|estExt_Genemark1.C_Ctg_680048	Tribonema minus UTEX_B_3156	polypeptide	Contig_68 333323..334991 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_68:333323..334991+
coding sequence from alignment at Contig_68:333323..334991+

spliced messenger RNA

>mRNA_8487 ID=mRNA_8487|Name=jgi.p|Trimin1|350644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=924bp|location=Sequence derived from alignment at Contig_68:333323..334991+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGGTCACCGCTGGCCAGGTGGCAGGCGATGGGGGCGCTGAACTTCA
TGCTCACGGGCTGGCCGCGATCATCGCCGCTGCGCTGGTGACGCTGTGCG
CGCTGCTCAGCGCGCTGCTGGCAGCGCTCCGCGCGCTGCTGCGACCGCCA
CCCGAGCGCTGCGCCTCTCCGTACGGCAGCAGCGCGGTCTGCTTCTCGAG
CCCCCCGGCACGGCGCGCGATGCCTGCCCGTGACGCGACCCTACGACACC
GCGAGCCTTTTGAACATGACGCCAGCGGCGGCAGCTACGATCCCTGCGAG
TACGCTGCTTCTGACGGCGGCGACAGCTACGCGTCATCGCCGCCGCGCAG
CAGCTCGCGGCGCAGCGCTGGTGCCGCCGCCACCCCCGGCTCCAAGGGCA
GCAGGAACCGTCTCAGCGTGTTCTTCCCGAGGCACCGCCTAAGCTGCCTC
GCGATGGACATGGTGGAGGGAGCGAGCGCGCACGCGCAGCAGCCGATGCC
TCCGCCGCTGCCGCTGCCGCCGTCGCCGTGGCCCGGCAGCTGCGGCAGCA
GCGGCGGCAGCCGGCGGCGCTCCACGCGCAAGTCCATGCGGCGCTCGATC
GTGGCGCCGGGCCTCGGCACGGCGTCGCCGCCGTTCGGCGCAGACGGCAG
CAGCGGCGGCGGCGGCGGCGGCGGCGGCGCAGGCGAGGCCGCCGACCCTC
TCGGTCGCAAGTGGACGATGGAGGCCGTGCACCACGAGTACCCGCACGAG
GTGGAGCTGCGGTTCGCGCGCAAGTCGCAGCGGAACACGCCGGGCAGCGG
CGGCGGCGGCGGCGGCGGCGGCGCAGCGGCGGCGCGGCGGAAGGAGACGC
GCAAGGCGAGCCACGTCAGCGACCTCGGCACCGCGCAGGTGTGGCTGTCC
GGGGTGTCGGTGGATGGTTGTTGA

protein sequence of jgi.p|Trimin1|350644

>Trimin1|350644|estExt_Genemark1.C_Ctg_680048 ID=Trimin1|350644|estExt_Genemark1.C_Ctg_680048|Name=jgi.p|Trimin1|350644|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=308bp
MEVTAGQVAGDGGAELHAHGLAAIIAAALVTLCALLSALLAALRALLRPP
PERCASPYGSSAVCFSSPPARRAMPARDATLRHREPFEHDASGGSYDPCE
YAASDGGDSYASSPPRSSSRRSAGAAATPGSKGSRNRLSVFFPRHRLSCL
AMDMVEGASAHAQQPMPPPLPLPPSPWPGSCGSSGGSRRRSTRKSMRRSI
VAPGLGTASPPFGADGSSGGGGGGGGAGEAADPLGRKWTMEAVHHEYPHE
VELRFARKSQRNTPGSGGGGGGGGAAAARRKETRKASHVSDLGTAQVWLS
GVSVDGC*

mRNA from alignment at Contig_68:333323..334991+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8487 ID=mRNA_8487|Name=jgi.p|Trimin1|350644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1669bp|location=Sequence derived from alignment at Contig_68:333323..334991+ (Tribonema minus UTEX_B_3156 )
ATGGAGGTCACCGCTGGCCAGGTGGCAGGCGATGGGGGTATTCTTCGCCA
GCGACTGCTACACGCTGTGCAGACGGGCAATATAGTCACAATGGAGCCTA
GCTGCTGTCAGGCCCGTCAACTGCGCTGGTTTTATCACCCTGCAGCTGGC
GTGGAGCGTGTGACCAGGAGTCCTGCAAGTTATTCCACCATCCTTATCCC
GGCACCGCAAGGTGAGCCAACTGCTGAAACATGCAAAAATGTTCTCGCTG
ACATTCCAATGAAAATGGTATCCTATGGAGACCCTGGCAGTGTCTGCGAC
GACAAGGCAGAAGTTTGCAAACTCCAGTGCTCGAGGTTTATGGAGGCACA
CTTACGTTCCGGAACATGGAGTTGCTATTACGCCTCTCGAAGTTCAGTCC
AGCATGAAGCAGCAGCCAGGCTTGTCCATGCTGGCAATGTGGTAGTGCGC
TCCTGTGACCTTCACATTTTCTGCATGACTGCACATTAGGCGCTCTGAAT
ATGGGTCATATGGGTTTCCGCTGCGGCCAGCGATGTGCTGGGCTGCACCT
TAGTCTTGCTTGCTGGAGCCTACAGCTCAGTTCCGCAAACTGCGACGCAT
GCACCGGTCATGCCATCGCGCGGGCGCACCGATACGCAGACCATCTGTAG
GAAGCGCCAGATGCAGCTCATCGCAAACACCAGCACAGCACCTGCACGGT
GACGCGATTGCAGCAGCGCAAGCAGTCTCTGCTGCTCCTTCTCAAGCGCC
GCGAAGCCCTCAATTCTACCTCCGCACCGCAGGCGCTGAACTTCATGCTC
ACGGGCTGGCCGCGATCATCGCCGCTGCGCTGGTGACGCTGTGCGCGCTG
CTCAGCGCGCTGCTGGCAGCGCTCCGCGCGCTGCTGCGACCGCCACCCGA
GCGCTGCGCCTCTCCGTACGGCAGCAGCGCGGTCTGCTTCTCGAGCCCCC
CGGCACGGCGCGCGATGCCTGCCCGTGACGCGACCCTACGACACCGCGAG
CCTTTTGAACATGACGCCAGCGGCGGCAGCTACGATCCCTGCGAGTACGC
TGCTTCTGACGGCGGCGACAGCTACGCGTCATCGCCGCCGCGCAGCAGCT
CGCGGCGCAGCGCTGGTGCCGCCGCCACCCCCGGCTCCAAGGGCAGCAGG
AACCGTCTCAGCGTGTTCTTCCCGAGGCACCGCCTAAGCTGCCTCGCGAT
GGACATGGTGGAGGGAGCGAGCGCGCACGCGCAGCAGCCGATGCCTCCGC
CGCTGCCGCTGCCGCCGTCGCCGTGGCCCGGCAGCTGCGGCAGCAGCGGC
GGCAGCCGGCGGCGCTCCACGCGCAAGTCCATGCGGCGCTCGATCGTGGC
GCCGGGCCTCGGCACGGCGTCGCCGCCGTTCGGCGCAGACGGCAGCAGCG
GCGGCGGCGGCGGCGGCGGCGGCGCAGGCGAGGCCGCCGACCCTCTCGGT
CGCAAGTGGACGATGGAGGCCGTGCACCACGAGTACCCGCACGAGGTGGA
GCTGCGGTTCGCGCGCAAGTCGCAGCGGAACACGCCGGGCAGCGGCGGCG
GCGGCGGCGGCGGCGGCGCAGCGGCGGCGCGGCGGAAGGAGACGCGCAAG
GCGAGCCACGTCAGCGACCTCGGCACCGCGCAGGTGTGGCTGTCCGGGGT
GTCGGTGGATGGTTGTTGA

Coding sequence (CDS) from alignment at Contig_68:333323..334991+

>mRNA_8487 ID=mRNA_8487|Name=jgi.p|Trimin1|350644|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=924bp|location=Sequence derived from alignment at Contig_68:333323..334991+ (Tribonema minus UTEX_B_3156 )
ATGGAGGTCACCGCTGGCCAGGTGGCAGGCGATGGGGGCGCTGAACTTCA
TGCTCACGGGCTGGCCGCGATCATCGCCGCTGCGCTGGTGACGCTGTGCG
CGCTGCTCAGCGCGCTGCTGGCAGCGCTCCGCGCGCTGCTGCGACCGCCA
CCCGAGCGCTGCGCCTCTCCGTACGGCAGCAGCGCGGTCTGCTTCTCGAG
CCCCCCGGCACGGCGCGCGATGCCTGCCCGTGACGCGACCCTACGACACC
GCGAGCCTTTTGAACATGACGCCAGCGGCGGCAGCTACGATCCCTGCGAG
TACGCTGCTTCTGACGGCGGCGACAGCTACGCGTCATCGCCGCCGCGCAG
CAGCTCGCGGCGCAGCGCTGGTGCCGCCGCCACCCCCGGCTCCAAGGGCA
GCAGGAACCGTCTCAGCGTGTTCTTCCCGAGGCACCGCCTAAGCTGCCTC
GCGATGGACATGGTGGAGGGAGCGAGCGCGCACGCGCAGCAGCCGATGCC
TCCGCCGCTGCCGCTGCCGCCGTCGCCGTGGCCCGGCAGCTGCGGCAGCA
GCGGCGGCAGCCGGCGGCGCTCCACGCGCAAGTCCATGCGGCGCTCGATC
GTGGCGCCGGGCCTCGGCACGGCGTCGCCGCCGTTCGGCGCAGACGGCAG
CAGCGGCGGCGGCGGCGGCGGCGGCGGCGCAGGCGAGGCCGCCGACCCTC
TCGGTCGCAAGTGGACGATGGAGGCCGTGCACCACGAGTACCCGCACGAG
GTGGAGCTGCGGTTCGCGCGCAAGTCGCAGCGGAACACGCCGGGCAGCGG
CGGCGGCGGCGGCGGCGGCGGCGCAGCGGCGGCGCGGCGGAAGGAGACGC
GCAAGGCGAGCCACGTCAGCGACCTCGGCACCGCGCAGGTGTGGCTGTCC
GGGGTGTCGGTGGATGGTTGTTGA