mRNA_8541 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149910
Unique NamemRNA_8541
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149910 vs. uniprot
Match: A0A836C952_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C952_9STRA)

HSP 1 Score: 110 bits (276), Expect = 4.390e-31
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 1 
Query:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR 159
            EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR
Sbjct:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR 53
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BLAST of jgi.p|Trimin1|149910 vs. uniprot
Match: A0A835YHT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHT8_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.600e-24
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR 159
            E TGRWTK EHDLF+KAL +YG+EW+ +AAMVGTRTVVQTRTHAQKYFQKLQ+
Sbjct:   27 EQTGRWTKGEHDLFLKALGVYGKEWKRVAAMVGTRTVVQTRTHAQKYFQKLQK 79
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BLAST of jgi.p|Trimin1|149910 vs. uniprot
Match: A0A7S3LKU2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LKU2_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.340e-20
Identity = 38/51 (74.51%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKL 153
            E+TGRWTKAEHD FVK L++YG+EW+ IAAM+ TRT+VQ RTHAQKYFQK+
Sbjct:   87 ENTGRWTKAEHDRFVKGLDVYGKEWKKIAAMIETRTIVQIRTHAQKYFQKI 137
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BLAST of jgi.p|Trimin1|149910 vs. uniprot
Match: A0A7S2L2R4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2L2R4_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 6.680e-20
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR 159
            EHTGRWTK EHD F+ AL LYG+EW+ +AA V TRTVVQTRTHAQKYFQKLQR
Sbjct:  111 EHTGRWTKEEHDSFLTALQLYGKEWKKVAARVKTRTVVQTRTHAQKYFQKLQR 163
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BLAST of jgi.p|Trimin1|149910 vs. uniprot
Match: B7FXN5_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FXN5_PHATC)

HSP 1 Score: 88.6 bits (218), Expect = 3.170e-19
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR 159
            EHTGRWTKAEH+ F+ AL  YG+EW+ +AA V TRTVVQTRTHAQKYFQKLQ+
Sbjct:  109 EHTGRWTKAEHEAFLSALQTYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLQK 161
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BLAST of jgi.p|Trimin1|149910 vs. uniprot
Match: A0A7R9YEJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YEJ1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.310e-19
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR 159
            EHTGRWT+ EH LF+ AL ++G+EW+ +AA VGTRTVVQTRTHAQKYFQKLQ+
Sbjct:  142 EHTGRWTREEHALFLNALRIHGKEWKKVAASVGTRTVVQTRTHAQKYFQKLQK 194
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BLAST of jgi.p|Trimin1|149910 vs. uniprot
Match: A0A6H5K5H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 5.920e-19
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKL 153
            E TGRWTKAEH+LF+KAL  YG+EW+ +A MV TRTVVQTRTHAQKYFQKL
Sbjct:  224 EQTGRWTKAEHELFLKALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKL 274
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BLAST of jgi.p|Trimin1|149910 vs. uniprot
Match: A0A7S4RBR2_9STRA (Hypothetical protein n=4 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RBR2_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.090e-19
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR 159
            EHTGRWT+ EH+ F+ AL LYG+EW+ +AA V TRTVVQTRTHAQKYFQKLQ+
Sbjct:  204 EHTGRWTREEHEAFLSALQLYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLQK 256
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BLAST of jgi.p|Trimin1|149910 vs. uniprot
Match: A0A7S3Q3P5_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q3P5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.100e-18
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKLQR 159
            EHTGRWT+ EHD F++AL  YG+EW+ +AA V TRTVVQTRTHAQKYFQKLQ+
Sbjct:   66 EHTGRWTREEHDAFLQALQQYGKEWKKVAAKVKTRTVVQTRTHAQKYFQKLQK 118
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BLAST of jgi.p|Trimin1|149910 vs. uniprot
Match: D8LG60_ECTSI (Histone deactylase of possible bacterial origin with ankyrin repeats at the N-terminus n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG60_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.510e-18
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:    1 EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQKL 153
            E TGRWTKAEH+LF++AL  YG+EW+ +A MV TRTVVQTRTHAQKYFQKL
Sbjct:  746 EQTGRWTKAEHELFLRALKKYGKEWKRVACMVRTRTVVQTRTHAQKYFQKL 796
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149910 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C952_9STRA4.390e-31100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835YHT8_9STRA1.600e-2481.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3LKU2_9STRA3.340e-2074.51Hypothetical protein (Fragment) n=1 Tax=Aplanochyt... [more]
A0A7S2L2R4_9STRA6.680e-2079.25Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
B7FXN5_PHATC3.170e-1975.47Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7R9YEJ1_9STRA4.310e-1973.58Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A6H5K5H7_9PHAE5.920e-1978.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4RBR2_9STRA8.090e-1973.58Hypothetical protein n=4 Tax=Ditylum brightwellii ... [more]
A0A7S3Q3P5_9STRA1.100e-1873.58Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
D8LG60_ECTSI1.510e-1876.47Histone deactylase of possible bacterial origin wi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_68contigContig_68:672825..673646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149910|gw1.68.100.1
DescriptionHistone deacetylase domain
COG categoryB
Max annot lvl2836|Bacillariophyta
EggNOG OGsCOG0123@1|root,COG0666@1|root,KOG0724@1|root,KOG0724@2759|Eukaryota,KOG1343@2759|Eukaryota,KOG4177@2759|Eukaryota,2XFFF@2836|Bacillariophyta
Evalue5.2e-20
Seed ortholog2850.Phatr45431
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId150232
TrackFilteredModels1
ProteinId149910
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149910gene_8541Tribonema minus UTEX_B_3156 geneContig_68 672825..673646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149910Trimin1|149910|gw1.68.100.1Tribonema minus UTEX_B_3156 polypeptideContig_68 672825..673646 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_8541_2exon_8541_2Tribonema minus UTEX_B_3156 exonContig_68 672825..672935 -
exon_8541_1exon_8541_1Tribonema minus UTEX_B_3156 exonContig_68 673599..673646 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_8541CDS_8541Tribonema minus UTEX_B_3156 CDSContig_68 673599..673646 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_8541 ID=mRNA_8541|Name=jgi.p|Trimin1|149910|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=159bp|location=Sequence derived from alignment at Contig_68:672825..673646- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGCATACAGGGCGCTGGACCAAGGCTGAGCACGATCTGTTTGTCAAGGC
GCTCAACCTGTACGGGCGCGAGTGGCGCACCATTGCGGCGATGGTGGGGA
CGCGCACGGTGGTGCAGACGCGCACGCACGCGCAGAAGTACTTCCAGAAG
CTGCAGAGG
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protein sequence of jgi.p|Trimin1|149910

>Trimin1|149910|gw1.68.100.1 ID=Trimin1|149910|gw1.68.100.1|Name=jgi.p|Trimin1|149910|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=53bp
EHTGRWTKAEHDLFVKALNLYGREWRTIAAMVGTRTVVQTRTHAQKYFQK
LQR
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mRNA from alignment at Contig_68:672825..673646-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8541 ID=mRNA_8541|Name=jgi.p|Trimin1|149910|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=822bp|location=Sequence derived from alignment at Contig_68:672825..673646- (Tribonema minus UTEX_B_3156 )
GAGCATACAGGGCGCTGGACCAAGGCTGAGCACGATCTGTTTGTCAAGGT
CAGCTAGAAGTTTGCATGGGGTGGTGTCATCATTCAAATGGTTCATTCAT
GAATTCACGGCAGAGAAGGGGATGAGGGGAGGGGTGGACAGTGGCGAGCC
CTGTCGGCCCACCGAGTGGCAATATGAAGCGTGCGCTTAGTTCAATCAGC
AAGGTTGTGGTGTACAGATCAATACTCACCTACGTTATGTTGTGAAATCA
TCACGTCTACATCGGGCAGCAGCGCTGCACACTTGAACCTTTCTCGTGCA
TCAGGGCTCCTAAATAAGTGCAGCAGCGCTCGGCGTGTCTGCAAGGGCCC
ATGCCTGCTAGCCCTAGCCTCCAGATGGCTGTGAGCAACACCAAGGCACT
AGCATGCCGCGGCCATGCAAACGCCCCGCCCCTTCAGCACCATGCAACTG
AGCAACTCTGCATGAATCATCTGGTCGCTGGCGCCCCAAACACGGCATGA
CACAGTATGCCCCATTGTGCATGTGACGTGCCACTTCAACTTGATGCATC
CAAGCGCTGCATCGTGCACCATCGCTTTGCGTGCGCACGCGTGAGGCGTG
GCGCAGGCACACCGCTTTTGTATTGGTGACGCTCCACTCCTGCCGCTGAG
CGCTGCTGCTCACGAGTGTCACTGTTCGCCACCGCCCCCGTCGCGCGCGC
GCCCCTGCCAGGCGCTCAACCTGTACGGGCGCGAGTGGCGCACCATTGCG
GCGATGGTGGGGACGCGCACGGTGGTGCAGACGCGCACGCACGCGCAGAA
GTACTTCCAGAAGCTGCAGAGG
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Coding sequence (CDS) from alignment at Contig_68:672825..673646-

>mRNA_8541 ID=mRNA_8541|Name=jgi.p|Trimin1|149910|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=159bp|location=Sequence derived from alignment at Contig_68:672825..673646- (Tribonema minus UTEX_B_3156 )
GAGCATACAGGGCGCTGGACCAAGGCTGAGCACGATCTGTTTGTCAAGGC
GCTCAACCTGTACGGGCGCGAGTGGCGCACCATTGCGGCGATGGTGGGGA
CGCGCACGGTGGTGCAGACGCGCACGCACGCGCAGAAGTACTTCCAGAAG
CTGCAGAGG
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