mRNA_10393 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Match: A0A836CA09_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA09_9STRA) HSP 1 Score: 394 bits (1012), Expect = 5.250e-138 Identity = 199/199 (100.00%), Postives = 199/199 (100.00%), Query Frame = 1
Query: 1 MVPRVWRVINKPLEKKQVSSHSGANAANGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQAKRGRITAAPQQQGSGGTGR 597
MVPRVWRVINKPLEKKQVSSHSGANAANGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQAKRGRITAAPQQQGSGGTGR
Sbjct: 1 MVPRVWRVINKPLEKKQVSSHSGANAANGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQAKRGRITAAPQQQGSGGTGR 199
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Match: A0A835YWP9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWP9_9STRA) HSP 1 Score: 367 bits (941), Expect = 6.240e-126 Identity = 190/199 (95.48%), Postives = 192/199 (96.48%), Query Frame = 1
Query: 4 VPRVWRVINKPLEKKQVSSHSGANAA-NGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQAKRGRITAAPQQQGSGGTGR 597
VPRVWRVINKPLEKKQVSSHSGANAA NGALHVTIPAPLELH+ MIVILFILRRLRAVIFKNDPAHVLM LPGNKSVQVHIDNYTDFINELG LHLAL+RYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSML GADMTYDKMCDFSAQAKRGRITAA QQQGSG TGR
Sbjct: 83 VPRVWRVINKPLEKKQVSSHSGANAAINGALHVTIPAPLELHQPMIVILFILRRLRAVIFKNDPAHVLMGLPGNKSVQVHIDNYTDFINELGRLHLALDRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLPGADMTYDKMCDFSAQAKRGRITAATQQQGSGSTGR 281
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Match: A0A835YLW9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLW9_9STRA) HSP 1 Score: 345 bits (884), Expect = 2.660e-116 Identity = 178/208 (85.58%), Postives = 182/208 (87.50%), Query Frame = 1
Query: 19 RVINKPLEKKQVSSHSGANAANGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQAKRGRITAAPQQQGSGGTGR*KSVAGHAKRLTQMW 642
+VINKPLEKKQVSSHSGANAANGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLM LPGNKSVQ HIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLA+TTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQ RG A P + G G A L Q +
Sbjct: 35 KVINKPLEKKQVSSHSGANAANGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMGLPGNKSVQAHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLASTTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQVTRGTRVAQPAAASAPGGGYMARTEALATALQQQY 242
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Match: A0A836CI82_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI82_9STRA) HSP 1 Score: 288 bits (737), Expect = 8.750e-97 Identity = 148/155 (95.48%), Postives = 151/155 (97.42%), Query Frame = 1
Query: 133 MIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQAKRGRITAAPQQQGSGGTGR 597
MIVILFILRRLRAVIFKNDP HVLM LPGNKSVQVHIDNYTDFINELG LHLAL+RYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGR+LSML GADMTYDKMC+FSAQAKRGRITAAPQQQGSGGTGR
Sbjct: 1 MIVILFILRRLRAVIFKNDPTHVLMGLPGNKSVQVHIDNYTDFINELGRLHLALDRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRNLSMLPGADMTYDKMCNFSAQAKRGRITAAPQQQGSGGTGR 155
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Match: A0A835YKA5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKA5_9STRA) HSP 1 Score: 257 bits (657), Expect = 1.550e-81 Identity = 160/274 (58.39%), Postives = 168/274 (61.31%), Query Frame = 1
Query: 4 VPRVWRVINKPLEKKQVSSHSGANAA-NGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQ-------------LLDTSIAR---FVTAYNQD------------AGRDLSMLHGADMTYDKMCD-----------------------------------------------FSAQAKRGRITAAPQQQGSGGTGR 597
VPRVWRVIN PLEKKQVSSHSGANAA NGALHVTIPAPLELHR MIVILFILRRLRAVIFKNDPAHVLM LPGNKSVQVHIDNYTDFINEL L LALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQ + AR VTA Q + + A +++M + + QAKRGRITAA QQQGSGGTGR
Sbjct: 101 VPRVWRVINNPLEKKQVSSHSGANAAINGALHVTIPAPLELHRPMIVILFILRRLRAVIFKNDPAHVLMGLPGNKSVQVHIDNYTDFINELRRLQLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQQQLWHMQQQYFDQMQRADAARTEALVTALQQQYVVQMQQWQAWQQAQQQRQIQNAQYMFERMQNTEHVRMQAMMTFQDNLVNRLLGPPAMHRQVSIEGGVNVGSRRTAPPILAPQAKRGRITAATQQQGSGGTGR 374
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Match: A0A835YJE7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJE7_9STRA) HSP 1 Score: 238 bits (608), Expect = 9.760e-69 Identity = 129/193 (66.84%), Postives = 150/193 (77.72%), Query Frame = 1
Query: 19 RVINKPLEKKQVSSHSGANAAN-GALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQAKRGRITAAPQQQGSGGTG 594
+VINKPLEKKQVS HSGANAAN GALHVTI AP ELH ++IVILFILRRLRA++F +PA VL+ LPGN S QV+ YTDFINE+G LHLA++RYG++S RNATATAICT A++QE QG HQLAATT ARGA++LDTS+ARF TAY+Q A RDLSML ADMTY M +FS +G QG G G
Sbjct: 830 QVINKPLEKKQVSCHSGANAANNGALHVTICAPKELHEAIIVILFILRRLRAIMFNEEPADVLIGLPGNGSAQVNSRCYTDFINEIGRLHLAIDRYGVFSMRNATATAICTTARIQEAQGQHQLAATTRARGARMLDTSLARFETAYDQSASRDLSMLPSADMTYIVMQEFSMSIAQGTRAPTAVTQGVVGHG 1022
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Match: A0A835Z4W1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W1_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.520e-34 Identity = 84/191 (43.98%), Postives = 115/191 (60.21%), Query Frame = 1
Query: 7 PRVW---RVINKPLEKKQVSSHSGANA-ANGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQAKRGRITAAP 567
P+ W +VI++PL+KKQ SSH+G NA ANG L VTIP P ELH + ++LF+ RRLRA+IF + +L L G QV + D +N+LG +HL ++R+G YS RNA+ TA A E+ G HQLAAT + R Q +D+S +T YNQ AGRD ++ A T +M F+ + G A P
Sbjct: 932 PKGWVIEQVIDEPLDKKQASSHTGKNAVANGNLQVTIPCPPELHDVVCMVLFVCRRLRALIFGKEAPDLLNGLSG-LGHQVDEGTFGDLMNDLGRIHLRISRWGHYSLRNASVTAAFALAGALEDIGQHQLAATVVTRYCQAVDSSTVAGMTNYNQQAGRDTQLMAPATNTPAEMAAFAQRLATGSAAARP 1121
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Match: A0A835Z092_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z092_9STRA) HSP 1 Score: 123 bits (309), Expect = 1.550e-28 Identity = 74/168 (44.05%), Postives = 103/168 (61.31%), Query Frame = 1
Query: 13 VWRVINKPLEKKQVSSHSG-ANAANGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTD--FINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMT 507
+ +VI PLE+KQ SSH+G ++ NG L V I AP ELH + +ILF+ RRLRA+IF+ +P +L L G Q Y + FI+ +G +HLA+ +G YS RNA+ TA+ A+ E G H L T L R AQ +S ARFV++Y+Q AG++ + ADMT
Sbjct: 908 IRQVIENPLEQKQASSHAGKSSVGNGPLPVDIVAPPELHEVICLILFVCRRLRAIIFEMEPPDLLTGLSGASGDQADCTTYANLKFISRIGRIHLAIPFFGHYSMRNASITAVMDMARDMEVGGLHGLKETLLNRAAQTWHSSRARFVSSYDQHAGQNTRHMPRADMT 1075
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Match: A0A835YRL5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRL5_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.670e-18 Identity = 62/182 (34.07%), Postives = 92/182 (50.55%), Query Frame = 1
Query: 25 INKPLEKKQVSSHSGANAANGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQVHIDNYTDFINELGCLHLALNRYGIYSFRNATATAICTAAKMQEEQGHHQLAATTLARGAQLLDTSIARFVTAYNQDAGRDLSMLHGADMTYDKMCDFSAQAKRGRITAAPQ 570
+++P+ KK +SH G L + IP P L ++V+LFILRRLRAV+ K +P ++ L G QV +TD + E+G HL + G+Y FR+ T T I ++ Q H+ A T GA+ L TS+A AY+ +A ++M H DF A I+ +PQ
Sbjct: 829 MDRPMAKK--TSHIRGRGEAGPLQIAIPVPKALADVLVVMLFILRRLRAVLHKAEPDDRVLGLSGANGKQVGKKTFTDAVAEIGAYHLGVPSLGVYVFRHETITTIMDLSRYLRSQNEHKAADTVEQDGARQLGTSVAAMRLAYDNNADA-VTMAH----------DFRAMKDAAVISPSPQ 997
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Match: A0A835Z433_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z433_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 9.880e-9 Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 1
Query: 13 VWRVINKPLEKKQVSSHSG-ANAANGALHVTIPAPLELHRSMIVILFILRRLRAVIFKNDPAHVLMSLPGNKSVQ 234
+ +VI PLE+KQ SSH+G ++ NG L V I AP ELH + +ILF+ RRLRA+IF+ +P +L L N +Q
Sbjct: 853 IRQVIENPLEQKQASSHAGKSSVGNGPLPVDIVAPPELHEVICLILFVCRRLRAIIFEMEPPDLLTGLSLNHQLQ 927 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350606 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10393 ID=mRNA_10393|Name=jgi.p|Trimin1|350606|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=714bp|location=Sequence derived from alignment at Contig_67:522509..524778+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTTCCTCGCGTGTGGCGTGTCATCAATAAGCCCCTGGAGAAGAAGCAback to top protein sequence of jgi.p|Trimin1|350606 >Trimin1|350606|estExt_Genemark1.C_Ctg_670057 ID=Trimin1|350606|estExt_Genemark1.C_Ctg_670057|Name=jgi.p|Trimin1|350606|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=200bp MVPRVWRVINKPLEKKQVSSHSGANAANGALHVTIPAPLELHRSMIVILFback to top mRNA from alignment at Contig_67:522509..524778+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10393 ID=mRNA_10393|Name=jgi.p|Trimin1|350606|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2270bp|location=Sequence derived from alignment at Contig_67:522509..524778+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_67:522509..524778+ >mRNA_10393 ID=mRNA_10393|Name=jgi.p|Trimin1|350606|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=600bp|location=Sequence derived from alignment at Contig_67:522509..524778+ (Tribonema minus UTEX_B_3156 )back to top |