Trimin1|350592|estExt_Genemark1.C_Ctg_670027 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350592
Unique Name	Trimin1\|350592\|estExt_Genemark1.C_Ctg_670027
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	481

Homology

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BLAST of jgi.p|Trimin1|350592 vs. uniprot
Match: A0A836C9Z9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Z9_9STRA)

HSP 1 Score: 897 bits (2318), Expect = 0.000e+0
Identity = 480/480 (100.00%), Postives = 480/480 (100.00%), Query Frame = 0

Query:    1 MLKLFKSKAVVDSEGPGKNSGSTVVSAGAGKSQPREAGGIRLQKPSDAAQVEAVATILHSATAGVSWTLGLWCLGLGTVMLRAARPELAADPITGTFWVAFVPFWLGDIMGMAFQVKLLSDAYPLRFITPEQRVLLERRYGAVGGGALSNTLPQELAGLGIGPLGKSIPCDMAYMPLVQRVAFAALVTVPLLALAIAQQVLACLELSSVAALNAAAPGAVLHRGNMLVTLSPLLAVEAAALVRMLIIRTRGPLPLITAALLLLGTLSIGAKADGVSGVLLSDAPWWAVLIPFWVLIALYLGVVAHIGMGEAFAKRVILSHAQRTSLLLYALALLAAGGGLGMVVARPILQGLPIWELALHVSAPLGALWSAAAMFCLGVCLAMEGAMARLLRTKGFEDPIPLSEVAGHWVKGGPGNENWALLGVVVLNRDNAAKEAQAAAATLGGNRSMSESSFGSSAIGGADDRHRHDSGSYDPLEAIS 480
            MLKLFKSKAVVDSEGPGKNSGSTVVSAGAGKSQPREAGGIRLQKPSDAAQVEAVATILHSATAGVSWTLGLWCLGLGTVMLRAARPELAADPITGTFWVAFVPFWLGDIMGMAFQVKLLSDAYPLRFITPEQRVLLERRYGAVGGGALSNTLPQELAGLGIGPLGKSIPCDMAYMPLVQRVAFAALVTVPLLALAIAQQVLACLELSSVAALNAAAPGAVLHRGNMLVTLSPLLAVEAAALVRMLIIRTRGPLPLITAALLLLGTLSIGAKADGVSGVLLSDAPWWAVLIPFWVLIALYLGVVAHIGMGEAFAKRVILSHAQRTSLLLYALALLAAGGGLGMVVARPILQGLPIWELALHVSAPLGALWSAAAMFCLGVCLAMEGAMARLLRTKGFEDPIPLSEVAGHWVKGGPGNENWALLGVVVLNRDNAAKEAQAAAATLGGNRSMSESSFGSSAIGGADDRHRHDSGSYDPLEAIS
Sbjct:    1 MLKLFKSKAVVDSEGPGKNSGSTVVSAGAGKSQPREAGGIRLQKPSDAAQVEAVATILHSATAGVSWTLGLWCLGLGTVMLRAARPELAADPITGTFWVAFVPFWLGDIMGMAFQVKLLSDAYPLRFITPEQRVLLERRYGAVGGGALSNTLPQELAGLGIGPLGKSIPCDMAYMPLVQRVAFAALVTVPLLALAIAQQVLACLELSSVAALNAAAPGAVLHRGNMLVTLSPLLAVEAAALVRMLIIRTRGPLPLITAALLLLGTLSIGAKADGVSGVLLSDAPWWAVLIPFWVLIALYLGVVAHIGMGEAFAKRVILSHAQRTSLLLYALALLAAGGGLGMVVARPILQGLPIWELALHVSAPLGALWSAAAMFCLGVCLAMEGAMARLLRTKGFEDPIPLSEVAGHWVKGGPGNENWALLGVVVLNRDNAAKEAQAAAATLGGNRSMSESSFGSSAIGGADDRHRHDSGSYDPLEAIS 480

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BLAST of jgi.p|Trimin1|350592 vs. uniprot
Match: A0A7S3YCK5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YCK5_HETAK)

HSP 1 Score: 97.4 bits (241), Expect = 9.010e-19
Identity = 110/324 (33.95%), Postives = 141/324 (43.52%), Query Frame = 0

Query:   16 PGKNSGSTVVSAGAGKSQPREAGGIRLQKP---SDAAQVEAVATILHSATAGVSWTLGLWCLGLGTVMLRAARPELAADPITGTFWVAFVPFWLGDIMGMAFQVKLLSDAYPLRFITPEQRVLLERRYGAVGGGALSNTLPQELAGLGIGPLGKSIPCDMAYMPLVQRVAFAALVTVPLLALAIAQQVLACLELSSVAALNAAAPGAVLHRGNMLVTLSPLLAVEAAALVRMLIIRTRGPLPLITAALLLLGTLSIGAKADGVSGVLLSDAPWWAVLIPFWVLIALYLGVVAHIGMGEAFAKRVILSHAQRTSLLLYALALLAA 336
            P   S ST  S  +  SQ   AGGIR   P   S + +   V   L  A  G+  TL LWC+GL  V L       AA   +  F   F PFWLGDIM +A Q ++L+ A   RF+ P +R+ L RRY       L +   + +              DM Y+PLVQRV  A  V+VP L L +A QVL CL L   A   + +  AV           PL   E   L    ++R           LL   T S+  KAD       +  P+ A   P W L AL  G+ A   +  A A+   L+  QR +L LYA AL  A
Sbjct:   24 PDGRSRSTGRSTASRPSQKNVAGGIRSPSPDTTSISREENPVELCLKIAVKGLGLTLLLWCIGLLFVALAVCN---AAGRASWAF--IFTPFWLGDIMALAVQARVLAAACSFRFL-PNERLAL-RRY-------LQDQSTRAV--------------DMNYLPLVQRVVLAVAVSVPALLLLVAFQVLLCLRLEGAAGAMSPSAAAVAL---------PLFLAEGVGLAHFCLLRDHSLASASCWLLLFASTASLAHKADAGGA---AAFPFAAAFAPAWALTALLAGLAAGAWVDHARARH-FLARRQRLALNLYAAALALA 306

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350592 vs. uniprot

BLAST of jgi.p|Trimin1|350592 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836C9Z9_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S3YCK5_HETAK	9.010e-19	33.95	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 454..480

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_67	contig	Contig_67:241749..248654 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350592	mRNA_10362	Tribonema minus UTEX_B_3156	mRNA	Contig_67 241749..249287 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350592|estExt_Genemark1.C_Ctg_670027 ID=Trimin1|350592|estExt_Genemark1.C_Ctg_670027|Name=jgi.p|Trimin1|350592|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=481bp
MLKLFKSKAVVDSEGPGKNSGSTVVSAGAGKSQPREAGGIRLQKPSDAAQ
VEAVATILHSATAGVSWTLGLWCLGLGTVMLRAARPELAADPITGTFWVA
FVPFWLGDIMGMAFQVKLLSDAYPLRFITPEQRVLLERRYGAVGGGALSN
TLPQELAGLGIGPLGKSIPCDMAYMPLVQRVAFAALVTVPLLALAIAQQV
LACLELSSVAALNAAAPGAVLHRGNMLVTLSPLLAVEAAALVRMLIIRTR
GPLPLITAALLLLGTLSIGAKADGVSGVLLSDAPWWAVLIPFWVLIALYL
GVVAHIGMGEAFAKRVILSHAQRTSLLLYALALLAAGGGLGMVVARPILQ
GLPIWELALHVSAPLGALWSAAAMFCLGVCLAMEGAMARLLRTKGFEDPI
PLSEVAGHWVKGGPGNENWALLGVVVLNRDNAAKEAQAAAATLGGNRSMS
ESSFGSSAIGGADDRHRHDSGSYDPLEAIS*