mRNA_10414 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|169813
Unique NamemRNA_10414
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|169813 vs. uniprot
Match: A0A835YM77_9STRA (HNHc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM77_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.260e-83
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 
Query:    1 PPADDPNKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRRPVHLYSLTGNKIWAFLSITEAAEYLNRRNKKACGSSITECCRHRPRCTSAYGFKWEYADVTPDDASK 345
            PPADDPNKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRRPVHLYSLTGNKIWAFLSITEAAEYLNRRNKKACGSSITECCRHRPRCTSAYGFKWEYADVTPDDASK
Sbjct:    1 PPADDPNKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRRPVHLYSLTGNKIWAFLSITEAAEYLNRRNKKACGSSITECCRHRPRCTSAYGFKWEYADVTPDDASK 115
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BLAST of jgi.p|Trimin1|169813 vs. uniprot
Match: A0A835Z5J3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5J3_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.620e-40
Identity = 66/107 (61.68%), Postives = 75/107 (70.09%), Query Frame = 1 
Query:    4 PADDPNKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRRPVHLYSLTGNKIWAFLSITEAAEYLNRRNKKACGSSITECCRHRPRCTSAYGFKWEYADV 324
            PADDP KTMVNHID NP N+ + NLEWVTAG N RH   T LC  RRPVH+YSLT  KIW F S+TEA E++ RRNKKA  S I  CCR    C +AY ++W YAD 
Sbjct:  247 PADDPTKTMVNHIDGNPSNSNYRNLEWVTAGENIRHAQATGLCKNRRPVHMYSLTWTKIWTFPSVTEAVEFVRRRNKKASDSRIVGCCRENRGCKTAYNYRWTYADT 353
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BLAST of jgi.p|Trimin1|169813 vs. uniprot
Match: A0A481YQZ3_9VIRU (HNH endonuclease n=1 Tax=Iridovirus LCIVAC01 TaxID=2506607 RepID=A0A481YQZ3_9VIRU)

HSP 1 Score: 82.4 bits (202), Expect = 3.260e-16
Identity = 44/105 (41.90%), Postives = 60/105 (57.14%), Query Frame = 1 
Query:   19 NKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRRPVHLYSLTGNKIWAFLSITEAAEYLNRRNKKACGSSITECCRHRPRCTSAYGFKWEYADVTPD 333
            NK  VNH D N  NN++TNLEWVTA  N++H+H+  L  + R V  Y+L    +  F +  EAAE+L  +N K     I+  CR      SAYG+KW+Y  +  D
Sbjct:  251 NKRYVNHKDGNKLNNDYTNLEWVTASENTKHSHSLGLDKRVRRVKQYTLESKYLRTFNNCREAAEFLKIKNVKTATCYISGACRGIHN--SAYGYKWKYGKILYD 353
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BLAST of jgi.p|Trimin1|169813 vs. uniprot
Match: A0A835Z3Q6_9STRA (HNHc domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Q6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 4.330e-15
Identity = 33/48 (68.75%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    1 PPADDPNKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRR 144
            PP DDPNKT+VNH+D NP NN+FTNLEWVT G N+RH H T  C  RR
Sbjct:   71 PPTDDPNKTIVNHMDGNPSNNDFTNLEWVTTGENNRHAHATGPCYNRR 118
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BLAST of jgi.p|Trimin1|169813 vs. uniprot
Match: A0A3B8SUV1_9FIRM (Endonuclease n=1 Tax=Firmicutes bacterium TaxID=1879010 RepID=A0A3B8SUV1_9FIRM)

HSP 1 Score: 60.1 bits (144), Expect = 8.560e-9
Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 1 
Query:   19 NKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRRPVHLYSLTGNKIWAFLSITEAAEYLNRRNKKACGSSITECCRHRPRCTSAYGFKWEYAD 321
            NK  VNHID N +NN  +NLEWV+   N  H+   +L +  R ++ Y L G  +  + SIT A E    R      SSI      R     AYG+KW Y++
Sbjct:   81 NKAQVNHIDGNKKNNNVSNLEWVSRSENMIHS-ARQLRNNVRKINQYDLDGRYLATYSSITIAGEINGIRE-----SSIANVLAGRRN--KAYGYKWRYSE 173
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BLAST of jgi.p|Trimin1|169813 vs. uniprot
Match: UPI001C201403 (NUMOD1 domain-containing DNA-binding protein n=1 Tax=Paenibacillus sp. SM 69 TaxID=2594886 RepID=UPI001C201403)

HSP 1 Score: 56.6 bits (135), Expect = 4.110e-7
Identity = 41/107 (38.32%), Postives = 51/107 (47.66%), Query Frame = 1 
Query:   31 VNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRRPVHLYSLTGNKIWAFLSITEAAEYLNRRNKKACGSSITECCRHRPRCTSAYGFKWEYADVTPD--DASK 345
            VNH D N RNN  TNLEWVT   N +H     L    + V  Y L GN I  ++SI+EAA     R      SSI+     R   +    F+W Y + + D  D SK
Sbjct:   81 VNHKDGNKRNNNATNLEWVTQSQNMKHAFDHGLVPTSKEVEQYDLKGNYIATYISISEAA-----RKTGINVSSISASVLRRNMFSGR--FQWRYKNDSHDIKDISK 180
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BLAST of jgi.p|Trimin1|169813 vs. uniprot
Match: A0A243IH94_BACHU (HNH endonuclease n=1 Tax=Bacillus thuringiensis subsp. konkukian TaxID=180856 RepID=A0A243IH94_BACHU)

HSP 1 Score: 50.4 bits (119), Expect = 3.950e-5
Identity = 26/67 (38.81%), Postives = 37/67 (55.22%), Query Frame = 1 
Query:   19 NKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRRPVHLYSLTGNKIWAFLSITEAAEYL 219
            NK  VNHID NP+NN F+NLEW     N+ H     L S  + V L     ++   F S+++A+ +L
Sbjct:   87 NKDFVNHIDGNPKNNHFSNLEWCNYEENNNHAFDNDLMSSNKKVILVDKNTSEPHLFRSMSKASLFL 153
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BLAST of jgi.p|Trimin1|169813 vs. uniprot
Match: UPI0006613980 (NUMOD4 motif-containing HNH endonuclease n=1 Tax=Streptococcus cristatus TaxID=45634 RepID=UPI0006613980)

HSP 1 Score: 50.1 bits (118), Expect = 5.430e-5
Identity = 26/67 (38.81%), Postives = 34/67 (50.75%), Query Frame = 1 
Query:   19 NKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRRPVHLYSLTGNKIWAFLSITEAAEYL 219
            NK  VNHID +P NN F NLEW T   N+ H     L      V L      ++  F S+ +A+E+L
Sbjct:   86 NKPTVNHIDGDPNNNHFENLEWATYKENNNHAFDNNLIKTGTSVILVDKKTKEVHMFRSMAKASEFL 152
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|169813 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835YM77_9STRA1.260e-83100.00HNHc domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835Z5J3_9STRA2.620e-4061.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A481YQZ3_9VIRU3.260e-1641.90HNH endonuclease n=1 Tax=Iridovirus LCIVAC01 TaxID... [more]
A0A835Z3Q6_9STRA4.330e-1568.75HNHc domain-containing protein n=1 Tax=Tribonema m... [more]
A0A3B8SUV1_9FIRM8.560e-937.62Endonuclease n=1 Tax=Firmicutes bacterium TaxID=18... [more]
UPI001C2014034.110e-738.32NUMOD1 domain-containing DNA-binding protein n=1 T... [more]
A0A243IH94_BACHU3.950e-538.81HNH endonuclease n=1 Tax=Bacillus thuringiensis su... [more]
UPI00066139805.430e-538.81NUMOD4 motif-containing HNH endonuclease n=1 Tax=S... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_67contigContig_67:683695..684042 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|169813|e_gw1.67.79.1
DescriptionHNH endonuclease
COG categoryS
Max annot lvl10744|Podoviridae
EggNOG OGs4QAIU@10239|Viruses,4QPDE@28883|Caudovirales,4QNBQ@10744|Podoviridae
Evalue2.16e-08
Seed ortholog1589297.A0A0B5HE03_9CAUD
Hectar predicted targeting categoryother localisation
TranscriptId170135
TrackFilteredModels1
ProteinId169813
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169813gene_10414Tribonema minus UTEX_B_3156 geneContig_67 683695..684042 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10414_1exon_10414_1Tribonema minus UTEX_B_3156 exonContig_67 683695..684042 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10414CDS_10414Tribonema minus UTEX_B_3156 CDSContig_67 683695..684042 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|169813Trimin1|169813|e_gw1.67.79.1Tribonema minus UTEX_B_3156 polypeptideContig_67 683695..684042 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10414 ID=mRNA_10414|Name=jgi.p|Trimin1|169813|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_67:683695..684042+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCACCTGCTGATGACCCGAACAAGACAATGGTCAATCACATTGACAGCAA
TCCCAGGAACAATGAGTTCACAAACCTGGAGTGGGTTACGGCAGGCGGAA
ACAGCAGGCACACGCACACGACGAGACTCTGCTCCAAGCGCCGCCCCGTA
CACTTGTACTCTCTCACAGGGAATAAGATATGGGCGTTTCTGTCTATCAC
CGAGGCAGCGGAGTACCTGAACCGTCGCAATAAGAAAGCATGCGGATCCT
CCATCACCGAGTGCTGCCGCCACCGTCCGAGGTGCACCAGCGCGTACGGC
TTCAAGTGGGAATATGCGGATGTGACCCCGGATGACGCCTCAAAATGA
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protein sequence of jgi.p|Trimin1|169813

>Trimin1|169813|e_gw1.67.79.1 ID=Trimin1|169813|e_gw1.67.79.1|Name=jgi.p|Trimin1|169813|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
PPADDPNKTMVNHIDSNPRNNEFTNLEWVTAGGNSRHTHTTRLCSKRRPV
HLYSLTGNKIWAFLSITEAAEYLNRRNKKACGSSITECCRHRPRCTSAYG
FKWEYADVTPDDASK*
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mRNA from alignment at Contig_67:683695..684042+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10414 ID=mRNA_10414|Name=jgi.p|Trimin1|169813|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=348bp|location=Sequence derived from alignment at Contig_67:683695..684042+ (Tribonema minus UTEX_B_3156 )
CCACCTGCTGATGACCCGAACAAGACAATGGTCAATCACATTGACAGCAA
TCCCAGGAACAATGAGTTCACAAACCTGGAGTGGGTTACGGCAGGCGGAA
ACAGCAGGCACACGCACACGACGAGACTCTGCTCCAAGCGCCGCCCCGTA
CACTTGTACTCTCTCACAGGGAATAAGATATGGGCGTTTCTGTCTATCAC
CGAGGCAGCGGAGTACCTGAACCGTCGCAATAAGAAAGCATGCGGATCCT
CCATCACCGAGTGCTGCCGCCACCGTCCGAGGTGCACCAGCGCGTACGGC
TTCAAGTGGGAATATGCGGATGTGACCCCGGATGACGCCTCAAAATGA
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Coding sequence (CDS) from alignment at Contig_67:683695..684042+

>mRNA_10414 ID=mRNA_10414|Name=jgi.p|Trimin1|169813|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_67:683695..684042+ (Tribonema minus UTEX_B_3156 )
CCACCTGCTGATGACCCGAACAAGACAATGGTCAATCACATTGACAGCAA
TCCCAGGAACAATGAGTTCACAAACCTGGAGTGGGTTACGGCAGGCGGAA
ACAGCAGGCACACGCACACGACGAGACTCTGCTCCAAGCGCCGCCCCGTA
CACTTGTACTCTCTCACAGGGAATAAGATATGGGCGTTTCTGTCTATCAC
CGAGGCAGCGGAGTACCTGAACCGTCGCAATAAGAAAGCATGCGGATCCT
CCATCACCGAGTGCTGCCGCCACCGTCCGAGGTGCACCAGCGCGTACGGC
TTCAAGTGGGAATATGCGGATGTGACCCCGGATGACGCCTCAAAATGA
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