Trimin1|149905|gw1.67.135.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|149905
Unique NameTrimin1|149905|gw1.67.135.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length100
Homology
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BLAST of jgi.p|Trimin1|149905 vs. uniprot
Match: A0A835YQA1_9STRA (PUB domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQA1_9STRA)

HSP 1 Score: 200 bits (508), Expect = 4.740e-65
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0 
Query:    1 VAVSPNITEGLRCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFREYDKGLVELAAVSDETLCALLQLLQEL 100
            VAVSPNITEGLRCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFREYDKGLVELAAVSDETLCALLQLLQEL
Sbjct:    1 VAVSPNITEGLRCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQNSRFMNEVWLNPGIRGMFQAIGFREYDKGLVELAAVSDETLCALLQLLQEL 100
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149905 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YQA1_9STRA4.740e-65100.00PUB domain-containing protein (Fragment) n=1 Tax=T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR018997PUB domainPFAMPF09409PUBcoord: 29..77
e-value: 5.8E-12
score: 45.4
NoneNo IPR availableGENE3D1.20.58.2190coord: 18..99
e-value: 2.2E-11
score: 45.3
NoneNo IPR availableCDDcd09212PUBcoord: 25..99
e-value: 1.27872E-13
score: 58.9328
IPR036339PUB-like domain superfamilySUPERFAMILY143503PUG domain-likecoord: 26..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_67contigContig_67:42726..43025 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149905mRNA_10340Tribonema minus UTEX_B_3156 mRNAContig_67 42726..43025 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|149905|gw1.67.135.1 ID=Trimin1|149905|gw1.67.135.1|Name=jgi.p|Trimin1|149905|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=100bp
VAVSPNITEGLRCVALSHANNEDPTTAVKYLINIAKHPQEGKYRVLKKQN
SRFMNEVWLNPGIRGMFQAIGFREYDKGLVELAAVSDETLCALLQLLQEL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018997PUB_domain
IPR036339PUB-like_dom_sf