Trimin1|350550|estExt_Genemark1.C_Ctg_660033 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350550
Unique Name	Trimin1\|350550\|estExt_Genemark1.C_Ctg_660033
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	119

Homology

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BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A835YPU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU1_9STRA)

HSP 1 Score: 250 bits (638), Expect = 2.730e-84
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0

Query:    1 MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVCCGVCVVS 118
            MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVCCGVCVVS
Sbjct:    1 MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVCCGVCVVS 118

[Close]

BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: D7FM73_ECTSI (Fibronectin type-III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM73_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.040e-27
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 0

Query:    8 LPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHE--TVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVC 111
            +P L+F+ C+L+S+TL W    G  YKLEFR++    W    S+ I P Q+     + KVT L PS +YIFRL+ + A G+  GPGP+ AFDTEVVSC PT++S C
Sbjct:    3 VPQLQFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSSSTEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCC 108

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350550 vs. uniprot

BLAST of jgi.p|Trimin1|350550 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YPU1_9STRA	2.730e-84	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
D7FM73_ECTSI	1.040e-27	48.11	Fibronectin type-III domain-containing protein n=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013783	Immunoglobulin-like fold	GENE3D	2.60.40.10	Immunoglobulins	coord: 2..110 e-value: 5.2E-6 score: 28.7
IPR003961	Fibronectin type III	CDD	cd00063	FN3	coord: 11..79 e-value: 1.54892E-6 score: 41.3279
IPR036116	Fibronectin type III superfamily	SUPERFAMILY	49265	Fibronectin type III	coord: 7..90

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_66	contig	Contig_66:217873..220650 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350550	mRNA_9660	Tribonema minus UTEX_B_3156	mRNA	Contig_66 217504..220900 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350550|estExt_Genemark1.C_Ctg_660033 ID=Trimin1|350550|estExt_Genemark1.C_Ctg_660033|Name=jgi.p|Trimin1|350550|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp
MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFS
LRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEV
VSCTPTSRSVCCGVCVVS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013783	Ig-like_fold
IPR003961	FN3_dom
IPR036116	FN3_sf