mRNA_9660 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A835YPU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU1_9STRA) HSP 1 Score: 251 bits (641), Expect = 2.250e-81 Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 2
Query: 251 MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVCCGVCVVS 604
MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVCCGVCVVS
Sbjct: 1 MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVCCGVCVVS 118
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: D7FM73_ECTSI (Fibronectin type-III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM73_ECTSI) HSP 1 Score: 107 bits (268), Expect = 1.700e-25 Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 2
Query: 272 LPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHE--TVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVC 583
+P L+F+ C+L+S+TL W G YKLEFR++ W S+ I P Q+ + KVT L PS +YIFRL+ + A G+ GPGP+ AFDTEVVSC PT++S C
Sbjct: 3 VPQLQFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSSSTEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCC 108
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A836CAM8_9STRA (BRCT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAM8_9STRA) HSP 1 Score: 991 bits (2563), Expect = 0.000e+0 Identity = 492/492 (100.00%), Postives = 492/492 (100.00%), Query Frame = 1
Query: 1 MSLQAVPKWGGAVTVWRKPTAGVSAASLLQHTLSPPHKKRRSATPGAASAATGAPSSGGNWTPPEGLTHVVAGDGTSTAEVKQELGVTKVPSKVKLVSKAWLTQCLQVGVESRAKVPEYPFLLLDPSEQKPPRTLASPFATDVSSGGSANNSDTDGGDSDRDVGVADLMGGTGGGGEAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWEVCRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDGFTREEQVFEMLGLEFIPPEFRNT 1476
MSLQAVPKWGGAVTVWRKPTAGVSAASLLQHTLSPPHKKRRSATPGAASAATGAPSSGGNWTPPEGLTHVVAGDGTSTAEVKQELGVTKVPSKVKLVSKAWLTQCLQVGVESRAKVPEYPFLLLDPSEQKPPRTLASPFATDVSSGGSANNSDTDGGDSDRDVGVADLMGGTGGGGEAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWEVCRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDGFTREEQVFEMLGLEFIPPEFRNT
Sbjct: 1 MSLQAVPKWGGAVTVWRKPTAGVSAASLLQHTLSPPHKKRRSATPGAASAATGAPSSGGNWTPPEGLTHVVAGDGTSTAEVKQELGVTKVPSKVKLVSKAWLTQCLQVGVESRAKVPEYPFLLLDPSEQKPPRTLASPFATDVSSGGSANNSDTDGGDSDRDVGVADLMGGTGGGGEAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWEVCRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDGFTREEQVFEMLGLEFIPPEFRNT 492
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A2U9BA38_SCOMX (DNA-directed DNA/RNA polymerase mu n=6 Tax=Scophthalmus maximus TaxID=52904 RepID=A0A2U9BA38_SCOMX) HSP 1 Score: 150 bits (380), Expect = 1.940e-36 Identity = 113/379 (29.82%), Postives = 166/379 (43.80%), Query Frame = 1
Query: 526 GEAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWE---------------VCRELDPKGTIKFMIG------GGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIKVCNLP----DGMNN-----------KKSEDTGMYEG--NTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDG--------------------FTREEQVFEMLGLEFIPPEFRNT 1476
GEA + VP FACQRR L +HN I L L + + + R +AF + AAVLK+LP V +L+ + +G+ ++ + +I++ G +E+M+ + R A+K L+ V+ VG A+RW G I T + +SG ++ G E E+ K + + G GG+RRGK D+D + T G V W +L K Y++ N P M+ KK + G G T G PWR RVD+ +S SQ+A+ +LGWTGS+ F R++RR+A T EE++F LGLEFIPP RN
Sbjct: 129 GEAVVFSVPSFACQRRITLDNHNTIITGALSLLAENAELSEEDGRGVAFRRAAAVLKALPEPVTCMTQLRGLPCLGEHSLRVIKDILENGESNEVESMKQSERYKALKVLTGVFGVGAKTADRWIREG-----IHTLHQLRDSGHALNRAQQAGVEHYDDLNQPVSMAEADAVGEIVEKAVVSVLPGAQITLTGGFRRGKPSGHDVDFLITHPEEGREEGLMSKVVSWLESQGFLLYHKTSRNSYLESANGPARPASNMDRFERCFSIFKLAKKYHELGKDAGPEETKPAGHKPWRAV--RVDLVVSPISQFAFALLGWTGSKLFERELRRWAGQEKAMSLSSHALFDNKQKRYLTATSEEEIFGHLGLEFIPPSERNA 500
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A5A9N5M5_9TELE (DNA-directed DNA/RNA polymerase mu n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9N5M5_9TELE) HSP 1 Score: 147 bits (371), Expect = 1.770e-35 Identity = 113/363 (31.13%), Postives = 169/363 (46.56%), Query Frame = 1
Query: 556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITN--IETAQKALESGQLAK-EWEEVGWEVCR-ELDPKGTI------------KFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIKVCNLPDGMNNKKSEDTGMY-----EGN---TSLLGLYP--------WRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYAS-------------DGFTR-------EEQVFEMLGLEFIPPEFRNT 1476
+ACQRRTPL+HHN + L L + + RS+AF + A+VLK+LP RV++ ELK + +G + + EI++ G +E+MR + + A+K L+ ++ VG A+RW+ GL + I T Q+ Q ++E+ V + E D G I + + GG+RRGKEL D+D + T G + W +L K Y++ + P N + +G+ T G+ P WR RVD+ +S SQ+A+ LGWTGS+ F R +RR+A D R EE++FE LGLEFIPP RN
Sbjct: 97 YACQRRTPLKHHNSHLTEALEVLSENAAYGENEGRSVAFRRAASVLKALPYRVQTMDELKCLPCLGDHSQRVIKEILEDGTSREVESMRQSEQFQAMKALTGIFGVGVRTADRWFREGLRSPSDLIRTGQQLNREQQAGVLYYDELNKPVTKHEADLIGDIVKEAVSAVLPGAEIQLMGGFRRGKELGHDVDFLITHPEEGKEEELMPKIISWLEERDLLLYQKTTRNSYLEKKDAPGRPPNNMDRFERCFSIFKLQGHAETTGSDGVRPSNQSEASYWRAV--RVDLVVSPYSQFAFATLGWTGSKLFERDLRRWAGQEKHMSLSSHALYDSVQRCYVRAQSEEEIFEYLGLEFIPPCERNA 457
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: UPI000E1E930D (DNA-directed DNA/RNA polymerase mu n=1 Tax=Dromaius novaehollandiae TaxID=8790 RepID=UPI000E1E930D) HSP 1 Score: 144 bits (363), Expect = 6.500e-35 Identity = 103/355 (29.01%), Postives = 160/355 (45.07%), Query Frame = 1
Query: 529 EAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLG-ITNIETAQKALESGQLA--KEWEEVGWEV---------------CRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNL-PDGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDG--------------------FTREEQVFEMLGLEFIPPEFRNT 1476
E P VP + CQRRTPL HHN + L L + D +RSLAFT+ A+ LK+LPRR+ EL + +G+ + E+++ G EA R + R ++ + ++ VG A RWY GL + ++ A L Q A + WE++ V R + P T+ + GG+RRGK D+D++ + G G V + E+ L P G +E +++ L + RVD+ ++ Q+A+ +LGWTGSR F R++RR+AS EE++F++LGL++IPP RN
Sbjct: 42 EEPSTAVPAYGCQRRTPLAHHNTVLTEALETLARAAAFDGDQRRSLAFTRAASALKALPRRLGDVRELPALPGVGEHCRRVIQEVLEDGSSAEAEAARRSERYRTMELFTGIFGVGTQTAARWYRQGLRTLDDLRAAGPRLSRQQQAGLRHWEDLATPVTLAEAEAVAELVRAEARRVLPDATVTLV--GGFRRGKPTGHDVDLLLSHPEEGRERALLGPLVARLEQQGLLLYEQSQPNTFGLEPSG----GGSGLDRFERCFAIVRL----ARALRVDMVVAPRGQFAFALLGWTGSRHFERELRRFASHQRGLALSSHGLYDPXRELFLPAASEEEIFQLLGLDYIPPAERNA 386
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: W5UBD8_ICTPU (DNA-directed DNA/RNA polymerase mu n=3 Tax=Siluroidei TaxID=1489793 RepID=W5UBD8_ICTPU) HSP 1 Score: 145 bits (367), Expect = 1.340e-34 Identity = 105/378 (27.78%), Postives = 166/378 (43.92%), Query Frame = 1
Query: 556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWEVCRELDPKGTIK---------------------FMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIKVCNLP--------------------------DGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASD--GFT------------------REEQVFEMLGLEFIPPEFRNT 1476
+ACQRRTPL+HHN + L L + + + RS+AF + A+VLK+LP VR+ ELK + +G+ ++ + EI++ G + +E+ R + + A+K L+ V+ VG A+RW+ GL + + + +GQ ++ G + +L+ T K + GG+RRGKE+ D+D + T G V W +L K Y++ + P D S ++G +G WR RVD+ +S SQ+A+ LGWTGS+ F R++RR+A G + EE +F LGLE+IPP RN
Sbjct: 138 YACQRRTPLKHHNSFLTEALETLAENAEFSENEGRSVAFRRSASVLKALPYVVRAMNELKDLPCLGEHSLRVIKEILEDGTSSEVESTRQSEQFQAMKALTGVFGVGARTADRWFREGL-----RSPEDLIHTGQKLNHAQQAGVQYYNDLNTPVTKKEAMVISDIVEKAVKAVLPGAIITLTGGFRRGKEVGHDVDFLITHPEEGAEEKLMPKIVNWLEDQGLLLYQKTTRNSYLESKDGPARPPSNMDRFERCFSIFKLEQSQVNSDTRLEASSYNSGTTDGMEERHSGSSWRAV--RVDLVVSPYSQFAFATLGWTGSKLFERELRRWAGQEKGMSLSSHALYDSKQQRYLRANSEEDIFAHLGLEYIPPSERNA 508
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A8C4CLV6_9TELE (DNA-directed DNA/RNA polymerase mu n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4CLV6_9TELE) HSP 1 Score: 143 bits (360), Expect = 1.890e-34 Identity = 104/354 (29.38%), Postives = 170/354 (48.02%), Query Frame = 1
Query: 556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGI-TNIETAQKALESGQLA--KEWEEVGWEVCR-ELDPKGTI------------KFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAHMLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLY------PWRGKMR-----RVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASD--------------------GFTREEQVFEMLGLEFIPPEFRNT 1476
+ACQRRTPL+H+N + L L + + RS+AFT+ A+VLK+LPR V+ EL+ + +G+ ++ + EI++ G +E+ R + + A+K L+ ++ VG A+RWY G+ +++ +++ L Q A + ++++ V + E D G I + + GG+RRGKE D+D + T G V W + + Y++ + P + + +E S+ L P R K RVD+ +S SQ+A+ VLGWTGS+ F R +RRYA T EE++F +LGLE+IP RN
Sbjct: 42 YACQRRTPLKHNNTHLTHALELLAESAAFGENEGRSVAFTRAASVLKTLPRSVQRIEELRGLPCLGEHSLRVIKEILEYGASQEVESTRQSEQYQAMKALTGIFGVGVKTADRWYREGVRRPSDLMDSEQKLNQAQQAGLQHYKDLNTCVSKAEADAIGVIVDQAVQAVLPGAQITLTGGFRRGKESGHDVDFLITHPEEGKEEGLMPKVVNWLDTQVGQKGQNSYLESKDGPA----RPPSNMDRFERCFSIFKLESQSCSPPEREKSHQWKAVRVDLVVSPFSQFAFAVLGWTGSKLFERDLRRYAGQVKNMSLNSHSLFDSHQRCFLRATSEEEIFSLLGLEYIPACDRNA 391
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: UPI0019C493EA (DNA-directed DNA/RNA polymerase mu n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI0019C493EA) HSP 1 Score: 145 bits (365), Expect = 2.060e-34 Identity = 106/362 (29.28%), Postives = 169/362 (46.69%), Query Frame = 1
Query: 556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLG--ITNIETAQKALESGQLAKEW-EEVGWEVCRE---------------LDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLYP-------------WRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDG--------------------FTREEQVFEMLGLEFIPPEFRNT 1476
+ACQRRTPL+HHN + L L + + + RS+AF + A+VLK+LP VR+ ELK + +G+ ++ + EI++ G +E+ R + + A+K L+ V+ VG A+RW GL + ++T QK + Q ++ +++ V R+ L P+ I + GG+RRGKE+ D+D + T G V W +L K Y++ + P + + +E S+ L WR RVD+ +S SQ+A+ LGWTGS+ F R++RR+A + EE++F LGLE+IPP RN
Sbjct: 140 YACQRRTPLKHHNSFLTEALEILAENAEFSENEGRSVAFRRSASVLKALPHAVRTIDELKDLPCLGEHSLSVIKEILEDGTSREVESTRQSEQFQAMKALTGVFGVGVKTADRWVREGLRSPLDLVDTGQKLNHAQQAGVQYYKDLNTPVTRKEAMVISVIVEKAVKALLPEAIIT--LTGGFRRGKEVGHDVDFLITHPEEGAEEKLMPKIVNWLEDQGLLLYQKTTRNSYLESKDGPA----RPPSNMDRFERCFSIFKLEQSKIDSNAHAEASSWRAI--RVDLVVSPYSQFAFATLGWTGSKLFERELRRWAGQEKGMSLSSHALYDSKKKCYLQASSEEEIFTHLGLEYIPPSERNA 493
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A556U392_BAGYA (DNA-directed DNA/RNA polymerase mu n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556U392_BAGYA) HSP 1 Score: 145 bits (365), Expect = 2.500e-34 Identity = 108/378 (28.57%), Postives = 171/378 (45.24%), Query Frame = 1
Query: 556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITNIETAQKALESGQLAKEWEEVGWEVCRELDPKGTIK---------------------FMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIK--------VCNLP------------------DGMNNKKSEDTGMYEGNTSLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASD--GFT------------------REEQVFEMLGLEFIPPEFRNT 1476
+ACQRRTPL+HHN + L L + ++ RS+AF + A+VLK+LPR VR+ +LK + +G+ ++ + EI+ G + +E R + + A+K L+ V+ VG A+RW+ GL +++ K+ Q +E G + +L+ T K + GG+RRGKE+ D+D + T G V W +L K Y++ CN+ D S ++G+ +G + G WR RVD+ +S SQ+A+ LGWTGS+ F R++RR+A G + EE++F +LGLE+IPP RN
Sbjct: 138 YACQRRTPLKHHNSVLTDALEILALNAEFTKNEGRSVAFRRAASVLKALPRGVRTMDDLKDLPCLGEHSLRVIKEILDAGTSSEVEWTRQSEQFQAMKALTGVFGVGVRTADRWFREGLR-NHLDLIHKS----QKLNRAQEAGVQYYNDLNTPVTKKEAMVITVIVEKAVNDVLPGAIITLTGGFRRGKEVGHDVDFLITHPDEGAEEKLMPKIVNWLEDQGLLLYQKTTRNSYLENKDGPARPACNMDRFERCFSIFKLERSKLDSDTRIEDSSYNSGVTDGTQTHSGS-TWRAV--RVDLVVSPYSQFAFATLGWTGSKLFERELRRWAGQEKGMSLSSHALYDSKQQRYLPANSEEEIFTLLGLEYIPPSERNA 507
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: A0A6J2UVU8_CHACN (DNA-directed DNA/RNA polymerase mu n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2UVU8_CHACN) HSP 1 Score: 145 bits (365), Expect = 2.560e-34 Identity = 109/386 (28.24%), Postives = 176/386 (45.60%), Query Frame = 1
Query: 529 EAPLPYVPPFACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGL-GITNIETAQKALESGQLA--------------KEWEEVGW---EVCRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYI-----------------------KVCNLPD--GMNNKKSEDTGMYEGNT---SLLGLYPWRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDG--------------------FTREEQVFEMLGLEFIPPEFRNT 1476
++P + +ACQRRTPL+HHN + L L + + RS+AF + AAVLK+LPR VR +LK + +G+ ++ + EI++ G + +E+ R + + A+K L+ ++ VG AERW+ G+ + +++T L Q A E +G E R + P I + GG+RRGKE+ D+D + T G V W +L K Y+ K+ P+ G +N+ + + EG+ + P + RVD+ +S SQ+A+ +LGWTGS+ F R++RR+A + EE++F +LGLE+IPP RN
Sbjct: 126 DSPTFAIESYACQRRTPLKHHNASLTEALELLAQNAEFTDNEGRSVAFRRAAAVLKTLPRAVRRLDDLKGLPCLGEHSLRVIKEILEDGVSSEVESTRQSEQYKAMKVLTGIFGVGTKTAERWFREGIRSLADLKTRGGRLNREQQAGLDYYDDLNRPVSKAEAHAIGQIVGEAVRAVLPGAEIT--LTGGFRRGKEVGHDVDFLITHPEEGKEEGLMPKIVSWLETKGLLLYQKTTRNSYLESKDGPVRPSHNMDRFERCFSIFKLKRTPEVCGTSNQSAGQNDVTEGSDVRQQEVQSEPSDWRAVRVDLVVSPYSQFAFALLGWTGSKLFERELRRWAGQEKSMSLSSHVLYDRAQNRYLRASSEEEIFALLGLEYIPPSQRNA 509
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Match: UPI001C8A97C3 (DNA-directed DNA/RNA polymerase mu n=1 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8A97C3) HSP 1 Score: 143 bits (361), Expect = 7.620e-34 Identity = 106/371 (28.57%), Postives = 167/371 (45.01%), Query Frame = 1
Query: 556 FACQRRTPLRHHNEDIVALLHELIDYYDAERDSKRSLAFTQVAAVLKSLPRRVRSGAELKPIKFIGKSAIEAVDEIVKTGHLTRLEAMRANPRLTAIKELSEVWMVGPTIAERWYDAGLGITN--IETAQKALESGQLAKEW----------------EEVGWEVCRELDPKGTIKFMIGGGYRRGKELTSDLDIIATFERHGGSPHGCGDHVRWAH----MLADKMEERGYIKVCNLPDGMNNKKSEDTGMYEGNTSLLGLYP----------------------WRGKMRRVDIFMSAPSQWAYGVLGWTGSRTFLRQMRRYASDG-----------------FTR---EEQVFEMLGLEFIPPEFRNT 1476
+ACQRRTPL+HHN + L L + + RS+AF + A+VLK+LPRRVRS +L+ + +G + + EI++ G +E+ R + + A+K L+ ++ VG A+RW+ GL + I T Q+ + Q ++ ++ + + P I+ M GG+RRGKE+ D+D + T G +W +L K Y++ + P + S + +E S+ L WR RVD+ +S SQ+A+ LGWTGS+ F R++RR+A + R EE++F LGLEFIPP RN
Sbjct: 134 YACQRRTPLKHHNSFLTEALEILAQNAEYNDNEGRSVAFRRAASVLKALPRRVRSMEDLRCLPCLGDHSQRVIKEILEDGSSREVESTRQSEQYQAMKALTGIFGVGVRTADRWFREGLRSPDDLIRTGQQLNRAQQAGVQYYDDLQKPVTMAEADVISDIVEKAVHSVLPGAEIQLM--GGFRRGKEVGHDVDFLITHPEEGKEEGLMPKITKWLEEQGLLLYQKTTRNSYLEKTDGPA----RASSNMDRFERCFSIFKLQKPAVSRESNCTVSAEDAGSEASGWRAV--RVDLVVSPCSQFAFATLGWTGSKLFERELRRWAGQEKHMSLSSHALYDSTQNLYLRAKTEEEIFSYLGLEFIPPSERNA 496 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
BLAST of jgi.p|Trimin1|350550 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9660 ID=mRNA_9660|Name=jgi.p|Trimin1|350550|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=976bp|location=Sequence derived from alignment at Contig_66:217504..220900- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTTCGAACTCTCAGCAACCGGCACGTGCTCGCTAAAGCTTGCACCACCAGback to top protein sequence of jgi.p|Trimin1|350550 >Trimin1|350550|estExt_Genemark1.C_Ctg_660033 ID=Trimin1|350550|estExt_Genemark1.C_Ctg_660033|Name=jgi.p|Trimin1|350550|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=119bp MEPPAAKLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSback to top mRNA from alignment at Contig_66:217504..220900- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9660 ID=mRNA_9660|Name=jgi.p|Trimin1|350550|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3397bp|location=Sequence derived from alignment at Contig_66:217504..220900- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_66:217504..220900- >mRNA_9660 ID=mRNA_9660|Name=jgi.p|Trimin1|350550|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=357bp|location=Sequence derived from alignment at Contig_66:217504..220900- (Tribonema minus UTEX_B_3156 )back to top |