Trimin1|350549|estExt_Genemark1.C_Ctg_660030 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|350549
Unique Name	Trimin1\|350549\|estExt_Genemark1.C_Ctg_660030
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	204

Homology

[Close]

BLAST of jgi.p|Trimin1|350549 vs. uniprot
Match: A0A835YVD7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD7_9STRA)

HSP 1 Score: 340 bits (872), Expect = 3.370e-117
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 0

Query:    1 MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHNRAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSEADEQHKETAEELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTPTPK 203
            MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHNRAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSEADEQHKETAEELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTPTPK
Sbjct:    1 MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHNRAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSEADEQHKETAEELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTPTPK 203

[Close]

BLAST of jgi.p|Trimin1|350549 vs. uniprot
Match: A0A835YXU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXU5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.510e-28
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = 0

Query:   95 PLASSEADEQHKETA--EELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTP 200
            PL  SEAD+QHKETA  EEL    XXXXXXXXX EGS GTDL R+LDAA   RARREVEQ+FGPAAA AA PEGPGEDS QAE+GGADGGG  KK+RRERKAK PFTP
Sbjct:  327 PLEGSEADKQHKETAAAEELSMETXXXXXXXXXQEGSGGTDLDRVLDAAVTNRARREVEQLFGPAAACAANPEGPGEDSMQAEIGGADGGGPAKKTRRERKAKLPFTP 434

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|350549 vs. uniprot

BLAST of jgi.p|Trimin1|350549 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YVD7_9STRA	3.370e-117	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YXU5_9STRA	1.510e-28	76.85	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..203

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_66	contig	Contig_66:200235..201712 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|350549	mRNA_9657	Tribonema minus UTEX_B_3156	mRNA	Contig_66 200054..201712 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|350549|estExt_Genemark1.C_Ctg_660030 ID=Trimin1|350549|estExt_Genemark1.C_Ctg_660030|Name=jgi.p|Trimin1|350549|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHN
RAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSE
ADEQHKETAEELGMESAEEELMETAPEGSEGTDLGRLLDAAERKRARREV
EQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTP
TPK*