mRNA_9657 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350549
Unique NamemRNA_9657
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|350549 vs. uniprot
Match: A0A835YVD7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVD7_9STRA)

HSP 1 Score: 341 bits (874), Expect = 1.760e-116
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 2 
Query:  182 MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHNRAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSEADEQHKETAEELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTPTPK 790
            MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHNRAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSEADEQHKETAEELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTPTPK
Sbjct:    1 MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHNRAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSEADEQHKETAEELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTPTPK 203
[Close]
BLAST of jgi.p|Trimin1|350549 vs. uniprot
Match: A0A835YXU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXU5_9STRA)

HSP 1 Score: 121 bits (304), Expect = 8.860e-28
Identity = 83/108 (76.85%), Postives = 88/108 (81.48%), Query Frame = 2 
Query:  464 PLASSEADEQHKETA--EELGXXXXXXXXXXXXPEGSEGTDLGRLLDAAERKRARREVEQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTP 781
            PL  SEAD+QHKETA  EEL    XXXXXXXXX EGS GTDL R+LDAA   RARREVEQ+FGPAAA AA PEGPGEDS QAE+GGADGGG  KK+RRERKAK PFTP
Sbjct:  327 PLEGSEADKQHKETAAAEELSMETXXXXXXXXXQEGSGGTDLDRVLDAAVTNRARREVEQLFGPAAACAANPEGPGEDSMQAEIGGADGGGPAKKTRRERKAKLPFTP 434
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350549 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YVD7_9STRA1.760e-116100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YXU5_9STRA8.860e-2876.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_66contigContig_66:200054..201712 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350549|estExt_Genemark1.C_Ctg_660030
Hectar predicted targeting categorymitochondrion
TranscriptId350871
TrackFilteredModels1
ProteinId350549
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350549gene_9657Tribonema minus UTEX_B_3156 geneContig_66 200054..201712 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9657_1exon_9657_1Tribonema minus UTEX_B_3156 exonContig_66 200054..200401 +
exon_9657_2exon_9657_2Tribonema minus UTEX_B_3156 exonContig_66 201202..201238 +
exon_9657_3exon_9657_3Tribonema minus UTEX_B_3156 exonContig_66 201305..201712 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9657UTR5_9657Tribonema minus UTEX_B_3156 five_prime_UTRContig_66 200054..200234 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9657CDS_9657Tribonema minus UTEX_B_3156 CDSContig_66 200235..200401 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350549Trimin1|350549|estExt_Genemark1.C_Ctg_660030Tribonema minus UTEX_B_3156 polypeptideContig_66 200235..201712 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9657 ID=mRNA_9657|Name=jgi.p|Trimin1|350549|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=793bp|location=Sequence derived from alignment at Contig_66:200054..201712+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAGCACCGCAGGCATGCAAGAGCCCCTCAGATTGAACCAGAGAGGCCTCG
ACTTCCTCACGGCACTCCTTGGTGGCGACTTCCGTGCTCTCGAGTGCGGC
TGGTGACATCAGCTGTACACGACAACCTCCAGACGCGCCACAGAGCAGTG
CCAGTCGGGTACAGCATGAGCGGGCCTAGAGATGGCGTCATTTGTGCCTC
AGATGCTCTTCCTGCAACGCTGTGGACGGGCCATCATGGCAACAAAGGCC
GGGAGCAACGGCGCAGCAGCTGCTGTGATCGTATTGGCCATCGCCACCGA
ACCTGACGACAATGAGGCGGATGTCCACAACCGCGCTTTCAACCAGAGCA
GCGCGACCTGCAGCCGCTCAACAGCCACCTCCTTCGCCAAGGAGGAGCAG
ATGGAGACTGCTCCGCAGGAGCTGGCGCCTCCCTCAAGCACAATGCGTTC
TTCCTCTCCACAGCCTCTCGCGAGCTCTGAGGCAGATGAGCAGCACAAGG
AGACTGCAGAGGAACTGGGCATGGAGAGTGCGGAGGAGGAGCTGATGGAG
ACGGCACCGGAGGGGTCTGAGGGGACCGATCTTGGTCGTCTTCTGGATGC
TGCAGAAAGGAAGCGCGCGCGCCGGGAGGTGGAGCAGGTGTTTGGGCCAG
CTGCTGCGCGCGCAGCAACTCCTGAGGGTCCCGGAGAAGATTCGACGCAG
GCGGAGGTCGGCGGCGCCGACGGCGGGGGGGCGCCCAAGAAGTCGCGGCG
CGAACGCAAAGCCAAACAGCCCTTCACGCCCACGCCCAAGTAG
back to top

protein sequence of jgi.p|Trimin1|350549

>Trimin1|350549|estExt_Genemark1.C_Ctg_660030 ID=Trimin1|350549|estExt_Genemark1.C_Ctg_660030|Name=jgi.p|Trimin1|350549|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
MASFVPQMLFLQRCGRAIMATKAGSNGAAAAVIVLAIATEPDDNEADVHN
RAFNQSSATCSRSTATSFAKEEQMETAPQELAPPSSTMRSSSPQPLASSE
ADEQHKETAEELGMESAEEELMETAPEGSEGTDLGRLLDAAERKRARREV
EQVFGPAAARAATPEGPGEDSTQAEVGGADGGGAPKKSRRERKAKQPFTP
TPK*
back to top

mRNA from alignment at Contig_66:200054..201712+

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9657 ID=mRNA_9657|Name=jgi.p|Trimin1|350549|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1659bp|location=Sequence derived from alignment at Contig_66:200054..201712+ (Tribonema minus UTEX_B_3156 )
AAGCACCGCAGGCATGCAAGAGCCCCTCAGATTGAACCAGAGAGGCCTCG
ACTTCCTCACGGCACTCCTTGGTGGCGACTTCCGTGCTCTCGAGTGCGGC
TGGTGACATCAGCTGTACACGACAACCTCCAGACGCGCCACAGAGCAGTG
CCAGTCGGGTACAGCATGAGCGGGCCTAGAGATGGCGTCATTTGTGCCTC
AGATGCTCTTCCTGCAACGCTGTGGACGGGCCATCATGGCAACAAAGGCC
GGGAGCAACGGCGCAGCAGCTGCTGTGATCGTATTGGCCATCGCCACCGA
ACCTGACGACAATGAGGCGGATGTCCACAACCGCGCTTTCAACCAGAGGT
GAGTTTTGACTGCAAAACGACGAGCCATGGTCGCGTTGCTTAGATCTCTC
TCTACATGTAAGCAGAACGAAACATATGCCATTTGGCGATTTCGTCTGAA
GTGATCGTCAATGCGCATCGAGACAGAGTGACTGTCAAGTTGCCGCATGA
TACATGCGGATTGTGGTAGTAAGCTTTACATCAATTAATCTGGGCTTGTT
TGCGCCCTCAGCTAGAACTGATCAAAAGCACCTCTTCACCAACGATTTGT
CCTGTTCCATCTGTCAACTGTGAGTGCCAACAGGACGGCCTTCCGTTCCG
CACCTATCTCCGCAAGGTGCAGAACGAGCTGTGTCATGTCTACTTTGGGC
TGGTCGTTTGCCGTATTATGCTGGCAAAATGCGTGTGTTTTCCATCACTG
AAGCTTATGTCAGAGACAGCCGACACTTGAAGCAAGGCTTGGTGATGTCA
ATCAATAGTGTTGATGGCGACTTCTGCTGCGCAATGTTTTTTGTGCTGTC
GGAACTCACACATAAGCATGCATGGCAGCGCGATGAGTGTAGTCTCTGAC
ATTCCGCTTTTCCGTCTGCTGGCTCGCAGATGATTGACCGCCACCTCCTC
ACCCTCCTGGAAGGCACAAATAGCGGGCTCAACTGGGGGCAGATGCCCTG
CGTGACATTGCCAACCTCGGGAAGGCGCTGTACACGACATTTGGCTCCTA
TCGAGACTCCAAAGCTGCTCGTCCCCTCAACCCGGCGTCAACCATTACAA
GGACCCATGCATGCGCTGCTGCCGGGCGCCCGCTGCTCTGCCACGCAGCA
GCGCGACCTGCAGCCGCTCAACAGCCACCTCCTTCGTCAGCGCTTCCTTT
GGGCGCAGCGCGGGCTACATCTTCGCACTTTGAAATTTCTCCGGCTCACA
GGCCAAGGAGGAGCAGATGGAGACTGCTCCGCAGGAGCTGGCGCCTCCCT
CAAGCACAATGCGTTCTTCCTCTCCACAGCCTCTCGCGAGCTCTGAGGCA
GATGAGCAGCACAAGGAGACTGCAGAGGAACTGGGCATGGAGAGTGCGGA
GGAGGAGCTGATGGAGACGGCACCGGAGGGGTCTGAGGGGACCGATCTTG
GTCGTCTTCTGGATGCTGCAGAAAGGAAGCGCGCGCGCCGGGAGGTGGAG
CAGGTGTTTGGGCCAGCTGCTGCGCGCGCAGCAACTCCTGAGGGTCCCGG
AGAAGATTCGACGCAGGCGGAGGTCGGCGGCGCCGACGGCGGGGGGGCGC
CCAAGAAGTCGCGGCGCGAACGCAAAGCCAAACAGCCCTTCACGCCCACG
CCCAAGTAG
back to top

Coding sequence (CDS) from alignment at Contig_66:200054..201712+

>mRNA_9657 ID=mRNA_9657|Name=jgi.p|Trimin1|350549|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=612bp|location=Sequence derived from alignment at Contig_66:200054..201712+ (Tribonema minus UTEX_B_3156 )
ATGGCGTCATTTGTGCCTCAGATGCTCTTCCTGCAACGCTGTGGACGGGC
CATCATGGCAACAAAGGCCGGGAGCAACGGCGCAGCAGCTGCTGTGATCG
TATTGGCCATCGCCACCGAACCTGACGACAATGAGGCGGATGTCCACAAC
CGCGCTTTCAACCAGAGCAGCGCGACCTGCAGCCGCTCAACAGCCACCTC
CTTCGCCAAGGAGGAGCAGATGGAGACTGCTCCGCAGGAGCTGGCGCCTC
CCTCAAGCACAATGCGTTCTTCCTCTCCACAGCCTCTCGCGAGCTCTGAG
GCAGATGAGCAGCACAAGGAGACTGCAGAGGAACTGGGCATGGAGAGTGC
GGAGGAGGAGCTGATGGAGACGGCACCGGAGGGGTCTGAGGGGACCGATC
TTGGTCGTCTTCTGGATGCTGCAGAAAGGAAGCGCGCGCGCCGGGAGGTG
GAGCAGGTGTTTGGGCCAGCTGCTGCGCGCGCAGCAACTCCTGAGGGTCC
CGGAGAAGATTCGACGCAGGCGGAGGTCGGCGGCGCCGACGGCGGGGGGG
CGCCCAAGAAGTCGCGGCGCGAACGCAAAGCCAAACAGCCCTTCACGCCC
ACGCCCAAGTAG
back to top